Petersen S S - OmicsDI

OmicsDI

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Unknown (3058)
Proteomics (74)
Transcriptomics (50)
Genomics (40)
Metabolomics (5)
Genomic (2)
Models (1)

Organisms

Andropogon gerardi (71)
Bacteria (71)
Canis lupus familiaris (71)
Chromatiales bacterium OalgGamma1 (71)
Clavibacter nebraskensis NCPPB 2581 (71)
Cnidaria (71)
Ensifer adhaerens (71)
Fasciola (71)
Human alphaherpesvirus 1 strain 17 (71)
Human alphaherpesvirus 1 strain KOS (71)
Human betaherpesvirus 5 (71)
Human herpesvirus 2 strain 186 (71)
Mesocricetus auratus (71)
Miscanthus x giganteus (71)
Mus musculus (71)
Panicum virgatum (71)
Platyhelminthes (71)
Pseudomonas aeruginosa PA103 (71)
Homo sapiens (63)
Mus musculus (11)
Arabidopsis thaliana (3)
Dinoroseobacter shibae DFL 12 = DSM 16493 (2)
Brucella melitensis bv. 1 str. 16M (2)
Saccharomyces cerevisiae W303 (1)
Oncorhynchus nerka (1)
Brucella melitensis (1)
Streptococcus mutans UA159 (1)
Schmidtea mediterranea (1)
Rattus norvegicus (1)
Sus scrofa (1)

Repository

pride (71)
biostudies-arrayexpress (51)
EGA (39)
MetaboLights (4)
dbGaP (2)
MassIVE (2)
BioModels (1)
GNPS (1)
jPOST (1)

Tissue

Cell culture (11)
Heart (4)
Epithelial cell (3)
Hepatocyte (3)
Whole body (3)
Blood plasma (2)
Brain (2)
Gill (2)
Liver (2)
Macrophage (2)
Blood (1)
Connective tissue (1)
Embryonic stem cell (1)
Epididymal white adipose tissue (1)
Excretion (1)
Foot muscle (1)
HEK-293T cell (1)
Leaf (1)
Lung (1)
Mantle (1)
Pancreas (1)
Permanent cell line cell (1)
Photosynthetic cell (1)
Plant cell (1)
Prostate cancer cell (1)
Prostate gland (1)
Protein secretion (1)
Shoot (1)
Skeletal muscle (1)
Testis (1)

Disease

Cardiovascular system disease (3)
Prostate cancer (3)
Alzheimer's disease (1)
Bacterial sepsis (1)
Breast cancer (1)
Disease free (1)
Influenza (1)
Non-small cell lung carcinoma (1)
Obesity (1)
Osteosarcoma (1)
Scabies (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (71)
Shotgun proteomics (44)
Gel-based experiment (9)
Bottom-up proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (5)
Mass spectrometry (4)
Data-dependent acquisition (4)
Data-independent acquisition (4)
Top-down proteomics (3)
NMR spectroscopy (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0- (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
All-ion fragmentation (1)
DiaPASEF (1)

Instrument Platform

Illumina NovaSeq 6000 (4)
Nuclear Magnetic Resonance (NMR) - (2)
X86_64-apple-darwin13.4.0 (64-bit) (1)
418 [Affymetrix] (1)
NextSeq 500 (1)
Orbitrap Fusion (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion ETD (1)
Flow injection analysis MS – POS (1)
Liquid Chromatography MS – NEG (1)
Liquid Chromatography MS – POS (1)
Liquid Chromatography MS/MS - positive (1)
Direct infusion MS - (1)
Q Exactive (1)
Liquid Chromatography MS - positive (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2024 (14)
2023 (11)
2013 (11)
2026 (10)
2020 (9)
2022 (9)
2019 (9)
2015 (7)
2010 (7)
2017 (7)
2025 (5)
2016 (4)
2014 (4)
2008 (4)
2005 (4)
2021 (4)
2018 (4)
2012 (3)
2009 (3)
2007 (2)

CHEBI ID

CHEBI:86038 (1)
CHEBI:77537 (1)
CHEBI:84650 (1)
CHEBI:78811 (1)
CHEBI:76291 (1)
CHEBI:77547 (1)
CHEBI:84061 (1)
CHEBI:29140 (1)
CHEBI:85415 (1)
CHEBI:85640 (1)
CHEBI:74069 (1)
CHEBI:74068 (1)
CHEBI:51824 (1)
CHEBI:77202 (1)
CHEBI:77228 (1)
CHEBI:74084 (1)
CHEBI:74087 (1)
CHEBI:74128 (1)
CHEBI:76368 (1)
CHEBI:73028 (1)
CHEBI:73870 (1)
CHEBI:73856 (1)
CHEBI:74086 (1)
CHEBI:74296 (1)
CHEBI:63419 (1)
CHEBI:28868 (1)
CHEBI:71687 (1)
CHEBI:31528 (1)
CHEBI:89742 (1)
CHEBI:73066 (1)

Metabolite Name

N1-methyl-4-pyridone-3-carboxamide (2)
Serine (2)
Proline (2)
Lysine (2)
Cysteine (2)
Histidine (2)
Phenylalanine (2)
Tyrosine (2)
Threonine (2)
Methionine (2)
Alanine (2)
Valine (2)
Isoleucine (2)
Leucine (2)
Glycine (2)
N-Acetyl-Glu (1)
N-Acetyl-Asp (1)
2,5-FurandicarboxylicÊacid (1)
N-Methyl-Asp (1)
N-Acetyl-Tyr (1)
N-Acetyl-Arg (1)
N-Acetyl-His (1)
N-Acetyl-Met (1)
(N6+N1)-Acetyl-Lys (1)
N1-Acetyl-Lys (1)
N-Acetyl-Ile (1)
N-Acetyl-Val (1)
N-Acetyl-Pro (1)
N-Acetyl-Ser (1)
N-Acetyl-Ala (1)

IsPrivate

False (1)

Modelling Approach

Constraint-based model (1)

Modification

Not available (1)

Study type

Transcription profiling by array (36)
RNA-seq of coding RNA (6)
Methylation profiling by array (3)
ChIP-chip by array (2)
Unknown experiment type (1)
Transcription profiling by tiling array (1)
ChIP-seq (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (319)
2025 (301)
2021 (301)
2023 (289)
2024 (274)
2020 (265)
2019 (194)
2018 (181)
2017 (152)
2016 (148)
2015 (146)
2014 (104)
2013 (88)
2012 (83)
2011 (57)
2026 (55)
2010 (39)
2009 (34)
2008 (27)
2007 (14)
2005 (9)
2006 (8)
2002 (5)
1998 (4)
2004 (3)
2003 (3)
2001 (2)
2000 (2)
1999 (2)

Lab affiliation

North Carolina State University (5)
University of Calgary (3)
Department of Geoscience, University of Calgary, Calgary, AB, Canada; Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina, USA (2)
Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland, and Department of Cardiothoracic Surgery, Jena University Hospital, Jena, Germany (2)
Aalborg University (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Berlin Institute of Health (BIH) at Charité – Universitätsmedizin Berlin, BIH Center for Regenerative Therapies (BCRT), Experimental Immunotherapy (1)
Center for Diagnostics, Section Mass Spectrometry and Protemics, University Medical Center Hamburg-Eppednorf, Hamburg, Germany (1)
Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark. The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark. (1)
Centre for Organismal Studies Dep. Molecular Evolution and Genomics University of Heidelberg 69120 Heidelberg Germany (1)
Copenhagen Center for Glycomics, Departments of Cellular and Molecular Medicine, Faculty of Health Sciences, University of Copenhagen, Blegdamsvej 3, DK-2200 Copenhagen N, Denmark (1)
Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, 5230 Odense M, Denmark (1)
Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark (1)
Department of Functional Genomics Felix-Hausdorff-Str. 8 17489 Greifswald (1)
Department of Geoscience, University of Calgary (1)
Department of Geoscience, University of Calgary, Calgary Ab, Canada (1)
Department of Geoscience, University of Calgary, Calgary Ab,Canada (1)
Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, Los Angeles, CA, USA Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, Los Angeles, CA, USA (1)
Department of Molecular Systems Biology, Helmholtz-Centre for Environmental Research - UFZ, Leipzig, Germany (1)
Department of Molecular and Medical Genetics, Oregon Health and Science University, Portland, OR USA (1)
Dept of Microbiology University of Alabama at Birmingham (1)
Deputy Director, The Walter and Eliza Hall Institute of Medical Research (WEHI) Professor and NHMRC Leadership Fellow Laboratory Head, Inflammation Division, WEHI 1G Royal Parade Parkville, VIC 3052, Australia (1)
Energy Bioengineering and Geomicrobiology Group, Department of Geoscience, University of Calgary (1)
Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, Australia (1)
General Botany, Matthias-Schleiden-Institut, Friedrich-Schiller University Jena Am Planetarium 1, 07743 Jena, Germany (1)
General and molecular microbiology, Institute for chemistry and biology of the marine environment (ICBM), Carl von Ossietzky University of Oldenburg, Oldenburg, Germany (1)
Helmholtz diabetes center (1)
IMCS, University of Glasgow,Glasgow UK (1)
Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne, UK (1)