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MetabolomicsChlorophyll biosynthesis under the control of arginine metabolism.

In natural environments, photosynthetic organisms adjust their metabolism to cope with the fluctuating availability of combined nitrogen sources, a growth-limiting factor. For acclimation, the dynamic degradation/synthesis of tetrapyrrolic pigments, as well as of the amino acid arginine, is ...

2024-03-12 | MTBLS8336 | MetaboLights
ProteomicsAlpine Willows (Salix, Salicaceae)
Contrasting levels of beta-diversity and underlying phylogenetic trends indicate different paths to chemical diversity in highland and lowland willow species Martin Volf*, Jing Vir Leong, Paola de Lima Ferreira, Tereza Volfova, Petr Kozel, Pavel Matos-Maravi, Elvira Horandl, Natascha D. Wagner, Niko...
ORGANISM(S): Salix Elaeagnos (ncbitaxon:386449) Salix Retusa (ncbitaxon:77066) Salix Viminalis (ncbitaxon:40686) Salix Breviserrata (ncbitaxon:1533360) Salix Acutifolia (ncbitaxon:1233969) Salix Fragilis (ncbitaxon:77063) Salix Foetida (ncbitaxon:470271) Salix Helvetica (ncbitaxon:470273) Salix Mielichhoferi Salix Alba (ncbitaxon:75704) Salix Triandra (ncbitaxon:77069) Salix Caprea (ncbitaxon:172267) Salix Lapponum (ncbitaxon:470272) Salix Caesia (ncbitaxon:470572) Salix Daphnoides (ncbitaxon:470274) Salix Waldsteiniana Salix Reticulata (ncbitaxon:75717) Salix Pentandra (ncbitaxon:75715) Salix Hastata (ncbitaxon:75710) Salix Rosmarinifolia (ncbitaxon:717491) Salix Myrtilloides (ncbitaxon:669809) Salix Aurita (ncbitaxon:470270) Salix Herbacea (ncbitaxon:77064) Salix Repens (ncbitaxon:467613) Salix Bicolor (ncbitaxon:1533359) Salix Purpurea (ncbitaxon:77065) Salix Glaucosericea Populus Tremula (ncbitaxon:113636) Salix Serpyllifolia (ncbitaxon:77067) Salix Cinerea (ncbitaxon:470278) 
2023-04-21 | MSV000091773 | MassIVE
TranscriptomicsCbf11 Regulates Periodic Expression of Genes Required to Prevent Catastrophic Mitosis in the Fission Yeast Cell Cycle
The expression of a large proportion of the fission yeast genome changes periodically with the cell cycle. Several key transcription factors have been identified that regulate these oscillating and interdependent waves of gene expression. However, for a significant number of cell cycle-regulated gen...
ORGANISM(S): Schizosaccharomyces pombe 
2015-09-18 | E-MTAB-2724 | biostudies-arrayexpress
Transcriptomics[E-MTAB-599] Mouse Transcriptome
Sequencing the transcriptome of DBAxC57BL/6J mice. To study the regulation of transcription, splicing and RNA turnover we have sequenced the transcriptomes of tissues collected DBAxC57BL/6J mice. We strongly encourage researchers to contact us if there is any queries about referencing or publishing ...
ORGANISM(S): Mus musculus 
2011-07-14 | GSE30617 | GEO
MetabolomicsGNPS - Alpine Willows (Salix, Salicaceae)
Contrasting levels of beta-diversity and underlying phylogenetic trends indicate different paths to chemical diversity in highland and lowland willow species Martin Volf*, Jing Vir Leong, Paola de Lima Ferreira, Tereza Volfova, Petr Kozel, Pavel Matos-Maravi, Elvira Horandl, Natascha D. Wagner, Niko...
ORGANISM(S): Salix Elaeagnos (ncbitaxon:386449) Salix Retusa (ncbitaxon:77066) Salix Viminalis (ncbitaxon:40686) Salix Breviserrata (ncbitaxon:1533360) Salix Acutifolia (ncbitaxon:1233969) Salix Fragilis (ncbitaxon:77063) Salix Foetida (ncbitaxon:470271) Salix Helvetica (ncbitaxon:470273) Salix Mielichhoferi Salix Alba (ncbitaxon:75704) Salix Triandra (ncbitaxon:77069) Salix Caprea (ncbitaxon:172267) Salix Lapponum (ncbitaxon:470272) Salix Caesia (ncbitaxon:470572) Salix Daphnoides (ncbitaxon:470274) Salix Waldsteiniana Salix Reticulata (ncbitaxon:75717) Salix Pentandra (ncbitaxon:75715) Salix Hastata (ncbitaxon:75710) Salix Rosmarinifolia (ncbitaxon:717491) Salix Myrtilloides (ncbitaxon:669809) Salix Aurita (ncbitaxon:470270) Salix Herbacea (ncbitaxon:77064) Salix Repens (ncbitaxon:467613) Salix Bicolor (ncbitaxon:1533359) Salix Purpurea (ncbitaxon:77065) Salix Glaucosericea Populus Tremula (ncbitaxon:113636) Salix Serpyllifolia (ncbitaxon:77067) Salix Cinerea (ncbitaxon:470278) 
2023-04-21 | MSV000091773 | GNPS
TranscriptomicsRNA-seq analysis of budding yeast wild type (BY4741) and prp45(1-169) mutant
Prp45 is a budding yeast NineTeen-Complex associated factor, which plays a role in pre-mRNA splicing. In addition to its documented involvement in the second step of splicing, here we show that it is important in the early stages of co-transcriptional spliceosome assembly as well. To determine the o...
ORGANISM(S): Saccharomyces cerevisiae 
2017-02-10 | E-MTAB-5149 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of budding yeast strains manipulated in RPL22A and RPL22B genes
Most Saccharomyces cerevisiae ribosomal protein genes (RPGs) are present as two paralogous copies that emerged during a whole genome duplication. The preservation of two copies of the same gene during the past ~100 million years enabled diversification of the regulation of their expression, and also...
ORGANISM(S): Saccharomyces cerevisiae 
2018-03-07 | E-MTAB-5275 | biostudies-arrayexpress
TranscriptomicsRNA-seq analysis of the budding yeast prp45(1-169) strain (a scarless truncation)
Prp45 is a budding yeast NineTeen-Complex associated factor, which plays a role in pre-mRNA splicing. prp45(1-169) is a temperature-sensitive truncation allele expressing only the first 169 amino acids (the full-length protein consists of 379 amino acids). RNA-seq analysis was performed to determine...
ORGANISM(S): Saccharomyces cerevisiae 
2024-08-30 | E-MTAB-5334 | biostudies-arrayexpress
TranscriptomicsRNA-seq analysis of the budding yeast set1∆ strain and prp45(1-169) set1∆ double mutant strain
Prp45 is a budding yeast NineTeen-Complex associated factor, which plays a role in pre-mRNA splicing. Because its human ortholog, SNW1/SKIP, is known to functionally and physically interact with factors involved in transcription elongation and chromatin modifications, it was suggested to be one of t...
ORGANISM(S): Saccharomyces cerevisiae 
2024-08-30 | E-MTAB-5335 | biostudies-arrayexpress
TranscriptomicsRNA-seq analysis of the budding yeast rad6 strain and prp45(1-169) rad6 double mutant strain
Prp45 is a budding yeast NineTeen-Complex associated factor, which plays a role in pre-mRNA splicing. Because its human ortholog, SNW1/SKIP, is known to functionally and physically interact with factors involved in transcription elongation and chromatin modifications, it was suggested to be one of t...
ORGANISM(S): Saccharomyces cerevisiae 
2024-08-30 | E-MTAB-5336 | biostudies-arrayexpress
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