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TranscriptomicsExpression analysis of Sphingomonas paucimobilis sp. EPA505 during biodegradation kinetics of various PAHs and detection of gene in a contaminated soil S3
Studying eight enzymes involved in the degradation of polycyclic aromatic hydrocarbons from the model strain Sphingomonas paucimobilis sp. EPA505 using a designed microarray of 8,048 probes. During the biodegradation kinetics with phenanthrene, fluoranthene or a mix of both pollutants, we identified...
ORGANISM(S): Sphingomonas paucimobilis 
2010-10-01 | E-GEOD-21402 | biostudies-arrayexpress
TranscriptomicsMonitoring of functional gene responses to biostimulation from TCE-contaminated sites using a functional microarray
This SuperSeries is composed of the following subset Series: GSE28606: Monitoring of functional gene responses to ERD (enhanced reductive dechlorination) from four TCE-contaminated sites GSE28608: Monitoring of functional gene responses to biostimulation from a TCE-contaminated site Refer to individ...
ORGANISM(S): groundwater metagenome 
2012-04-02 | E-GEOD-28609 | biostudies-arrayexpress
TranscriptomicsExperimental validation of HiSpOD probe design with complex background mRNA or 3 known antiense RNA and expression analysis on a contaminated groundwater sample
HiSpOD is a new efficient functional microarrays probe design algorithm especially dedicated for the microbial ecology and environmental studies. It was used to design 3392 probes targeting 21 genes involved in chlorinated solvent biodegradation pathways and synthesized on a nimblegen microarray. In...
ORGANISM(S): uncultured organism 
2011-04-13 | E-GEOD-21492 | biostudies-arrayexpress
TranscriptomicsMonitoring of functional gene responses to ERD (enhanced reductive dechlorination) from four TCE-contaminated sites
A functional microarray targeting 24 genes involved in chlorinated solvent biodegradation pathways has been developed and used to monitor the gene diversity present in four trichloroethylene (TCE) contaminated sites under ERD (enhanced reductive dechlorination) treatment. The microarray format provi...
ORGANISM(S): groundwater metagenome 
2012-04-02 | E-GEOD-28606 | biostudies-arrayexpress
TranscriptomicsMonitoring of functional gene responses to biostimulation from a TCE-contaminated site
A functional microarray targeting 24 genes involved in chlorinated solvent biodegradation pathways has been developed and used to monitor the gene expression in a contaminated site (site B) under ERD (enhanced reductive dechlorination) treatment. The microarray format provided by NimbleGen and used ...
ORGANISM(S): groundwater metagenome 
2012-04-02 | E-GEOD-28608 | biostudies-arrayexpress
TranscriptomicsAssessing the importance of target type for oligonucleotide microarray experiments
In order to assess the effect on signal variability of the type of target used for oligonucleotide microarray experiments, we hybridized double and single stranded DNA of three genes on a Nimblegen High Density microarray. This slide carries specific probes (two lengths: 30 and 50 nucleotides, for a...
ORGANISM(S): Dehalococcoides sp. VS 
2010-07-27 | E-GEOD-23168 | biostudies-arrayexpress
UnknownComparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine.
Not available
S-EPMC4153887 | biostudies-literature
UnknownCross-platform comparison for the detection of RAS mutations in cfDNA (ddPCR Biorad detection assay, BEAMing assay, and NGS strategy).
Not available
S-EPMC5940402 | biostudies-literature
TranscriptomicsDifferentiation of a human gut microbiota in an improved three-stage continuous culture model of the human large intestine under anaerobia generated by the bacteria
A three-stage continuous fermentative system was developed to simulate and control physicochemical factors of the gut biology. Inoculation was of each reactor was performed from a human fecal sample which was initially amplified with a batch procedure. Samples from the initial feces, the batch and f...
ORGANISM(S): uncultured bacterium 
2013-05-07 | E-GEOD-46677 | biostudies-arrayexpress
TranscriptomicsInteractions of wheat aleurine and plant omega-3 fatty acids on the rat gut microbiota
Microbiota from rats fed with wheat aleurone and plant omega fatty acids In this study we investigated how an AX-rich WA and ALA from linseed oil (LO) modulate the gut microbiota of rats. Wistar rats were fed a standard diet and received either an iso-energetic control oil (PO), control oil + aleuro...
ORGANISM(S): Rattus norvegicus 
2013-05-02 | E-GEOD-46557 | biostudies-arrayexpress
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