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GenomicsPho and Ph, H3K27me3 and Cg ChIP-seq data in Drosophila third instar larval brains and discs
Genome-wide binding profile of PcG proteins- Ph, H3K27me3 and Cg in Drosophila third instar larval brains and disks, in duplicate, using Illumina HiSeq 2500. The sequence reads that passed quality filters were analyzed. Drosophila third instar larval brains and discs were dissected and fixed with 2%...
ORGANISM(S): Drosophila melanogaster 
2016-03-31 | E-GEOD-77582 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis Col-0 plants with wild type, arr1-1 knock-out, ARR1 over-expressor and ARR1-SRDX fusion protein over-expressor genotypes treated with 6-Benzyladenine for different lengths of time
Arabidopsis thaliana Col-0 plants and three other genotypes (ARR1 overexpressor, arr1-1 knockout, overexpressor of ARR1-SRDX fusion protein) were grown in liquid media (1/2 MS, 1 g/L sucrose, 0.5 g/L MES, pH 5.7) in a Percival AR-66L growth chamber at 24 oC, 16:8 h day:night cycle, and 100 µE light ...
ORGANISM(S): Arabidopsis thaliana 
2008-08-31 | E-MEXP-689 | biostudies-arrayexpress
UnknownOxidative DNA damage induced by copper and hydrogen peroxide promotes CG-->TT tandem mutations at methylated CpG dinucleotides in nucleotide excision repair-deficient cells.
Not available
S-EPMC134245 | biostudies-literature
GenomicsPho and Ph, H3K27me3 and Engrailed ChIP-seq data in Drosophila third instar larval brains and disks
Genome-wide binding profile of PcG proteins Pho and Ph, H3K27me3 and Engrailed in Drosophila third instar larval brains and disks, in duplicate, using Illumina HiSeq 2500. The sequence reads that passed quality filters were analyzed. Drosophila third instar larval brains and disks were dissected and...
ORGANISM(S): Drosophila melanogaster 
2016-04-01 | E-GEOD-76892 | biostudies-arrayexpress
TranscriptomicsMethylation of Polycomb target genes in intestinal cancer is mediated by inflammation
Using glutathione peroxidase, Gpx1 and Gpx2, double knockout (Gpx1/2-KO) mice as a model of inflammatory bowel disease predisposing to intestinal cancer, we analyzed genome-wide DNA methylation and chromatin changingM-bM-^@M-^Ys in the mouse ileum during chronic inflammation, aging and cancer. We fo...
ORGANISM(S): Mus musculus 
2008-12-31 | E-GEOD-12315 | biostudies-arrayexpress
UnknownInternet-based exercise and physical activity promotion for persons with multiple sclerosis: a randomized controlled trial.
Not available
S-EPMC12016365 | biostudies-literature
TranscriptomicsRNA-seq of five Populus x canescens (Grey poplar) organs/tissues during periodic or chronic drought-heat stress treatment and after recovery in comparison to untreated controls
Simulating predicted future climate conditions, stress response and stress-related memory after one week of recovery were transcriptionally characterised in young and old leaves, phloem-bark, developing xylem and roots of 3-month-old Grey poplar plants that had undergone three weeks of stress or wer...
ORGANISM(S): Populus tremula x Populus alba 
2019-01-11 | E-MTAB-6121 | biostudies-arrayexpress
TranscriptomicsFHB on wheat
Near isogenic wheat lines, differing in the presence of the FHB-resistance QTL Fhb1 and Qfhs.ifa-5A, have been sequenced using Illumina HiSeq2000 under disease pressure (30 and 50 hai) as well as with mock-inoculation, to discern transcriptional differences induced by Fusarium graminearum.
ORGANISM(S): Triticum aestivum 
2013-10-10 | E-MTAB-1729 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human T lymphoblasts by IL-2 withdrawal ro determione the molecular signature of induced cell cycle exit
Molecular mechanisms of cell cycle exit are poorly understood. A group of genes required for cell cycle exit and maintenance of cell quiescence in human fibroblasts following serum deprivation has been recently identified. Studies on lymphocytes following growth factor deprivation-induced cell cycle...
ORGANISM(S): Homo sapiens 
2009-08-23 | E-GEOD-13909 | biostudies-arrayexpress
TranscriptomicsChromosome wide analysis of parental allele specific chromatin and DNA methylation along mouse distal chr7
Imprinted genes are monoallelically expressed according to parental inheritance. The maternally and paternally inherited alleles are distinguished epigenetically by DNA methylation and histone modifications. Chromosome-wide Chromatin immunoprecipitation (ChIP) and MIRA analysis of MatDup.dist7 and ...
ORGANISM(S): Mus musculus 
2011-03-31 | E-GEOD-26891 | biostudies-arrayexpress
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