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Unknown
(124)
Transcriptomics
(65)
Proteomics
(11)
Genomics
(4)
Metabolomics
(3)
Organisms
Drosophila melanogaster
(36)
Homo sapiens
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Streptomyces coelicolor
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Gallus gallus
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Repository
biostudies-arrayexpress
(69)
pride
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Disease
Disease free
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Technology Type
Mass Spectrometry
(6)
Shotgun proteomics
(4)
Mass spectrometry
(3)
Affinity purification coupled with mass spectrometry proteomics
(1)
Bottom-up proteomics
(1)
Data-dependent acquisition
(1)
Instrument Platform
Liquid Chromatography MS - positive - reverse phase
(2)
Liquid Chromatography MS - negative - reverse phase
(2)
RNeasy minikit
(1)
GeneTitan® multi-channel instrument
(1)
Orbitrap Exploris 480
(1)
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(1)
Xevo G2-XS QTOF (Waters)
(1)
Publication Date
2011
(33)
2013
(11)
2010
(5)
2014
(4)
2012
(4)
2009
(4)
2008
(3)
2024
(3)
2023
(3)
2016
(2)
2015
(2)
2022
(2)
2021
(2)
2025
(2)
2019
(1)
2020
(1)
2017
(1)
CHEBI ID
CHEBI:140353
(1)
CHEBI:140355
(1)
CHEBI:140354
(1)
CHEBI:136498
(1)
CHEBI:140367
(1)
CHEBI:140368
(1)
CHEBI:140366
(1)
CHEBI:140370
(1)
CHEBI:90430
(1)
CHEBI:136241
(1)
CHEBI:16001
(1)
CHEBI:73229
(1)
CHEBI:134594
(1)
CHEBI:37736
(1)
CHEBI:61553
(1)
CHEBI:67168
(1)
CHEBI:46905
(1)
CHEBI:84818
(1)
CHEBI:18066
(1)
CHEBI:18077
(1)
CHEBI:15859
(1)
CHEBI:15729
(1)
CHEBI:17927
(1)
CHEBI:28358
(1)
CHEBI:16284
(1)
CHEBI:30913
(1)
CHEBI:16349
(1)
CHEBI:18307
(1)
CHEBI:17552
(1)
CHEBI:64561
(1)
Metabolite Name
PA(38:4)
(1)
N(1)-acetylspermidine
(1)
L-homocysteine
(1)
L-cysteinylglycine
(1)
L-alpha-aminobutyric acid
(1)
PI(18:1/20:3)
(1)
PI(18:0/20:2)
(1)
PI(18:1/18:2)
(1)
S-adenosyl-L-methioninate
(1)
PI(16:0/16:1)
(1)
PI(16:0/20:4)
(1)
PI(18:0/22:4)
(1)
PI(18:0/20:3)
(1)
Beta-D-glucose
(1)
4-hydroxyproline
(1)
PC(18:0/18:1)
(1)
PI(16:0/18:1)
(1)
L-cystathionine
(1)
S-adenosyl-L-homocysteine
(1)
5'-S-methyl-5'-thioadenosine
(1)
L-gamma-glutamyl-L-cysteine
(1)
L-asparagine
(1)
Glutathione disulfide
(1)
PA(40:6)
(1)
PI(16:0/16:0)
(1)
L-cysteine
(1)
L-arginine
(1)
N(1)-acetylspermine
(1)
Spermine
(1)
L-serine
(1)
Study type
ChIP-chip by tiling array
(33)
Transcription profiling by array
(26)
RNA-seq of coding RNA
(5)
ChIP-seq
(4)
Animal - One-color microarray
(1)
Release Date
2011
(35)
2013
(14)
2021
(13)
2019
(12)
2025
(12)
2022
(11)
2016
(10)
2024
(10)
2020
(10)
2023
(9)
2014
(8)
2012
(8)
2010
(8)
2015
(7)
2018
(7)
2017
(7)
2009
(5)
2008
(5)
2026
(2)
Lab affiliation
Carnegie Mass Spec Facility
(1)
Harvard Medical School Department of Cell Biology Boston MA 02115, USA
(1)
Institute of Biochemistry II, Faculty of Medicine, Goethe University Frankfurt, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany. Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Max-von-Laue Straße 15, 60438 Frankfurt am Main, Germany. Fraunhofer Institute of Translational Medicine and Pharmacology, Carl-von-Noorden-Platz 9, 60596 Frankfurt am Main, Germany
(1)
Kobilka Institute of Innovative Drug Discovery, School of Medicine, The Chinese University of Hong Kong, Shenzhen, Shenzhen 518172, China.
(1)
Max Perutz Labs, Vienna BioCenter, Dr. Bohr-Gasse 9, Vienna, Austria
(1)
SyNergy, LMU München
(1)
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A conserved ATG2-GABARAP family interaction is critical for phagophore formation.
Not available
S-EPMC7054675
|
biostudies-literature
Cite
Establishment of the phagophore-ERES membrane contact site initiates phagophore elongation.
Not available
S-EPMC12618252
|
biostudies-literature
Cite
Peroxisomal Atg37 binds Atg30 or palmitoyl-CoA to regulate phagophore formation during pexophagy.
Not available
S-EPMC3926955
|
biostudies-literature
Cite
Resveratrol-mediated autophagy requires WIPI-1-regulated LC3 lipidation in the absence of induced phagophore formation.
Not available
S-EPMC3288019
|
biostudies-literature
Cite
Blocking autophagosome closure manifests the roles of mammalian Atg8-family proteins in phagophore formation and expansion during nutrient starvation.
Not available
S-EPMC12013414
|
biostudies-literature
Cite
Ultrastructural relationship of the phagophore with surrounding organelles.
Not available
S-EPMC4502653
|
biostudies-literature
Cite
Phosphorylation of Atg9 regulates movement to the phagophore assembly site and the rate of autophagosome formation.
Not available
S-EPMC4835963
|
biostudies-literature
Cite
Atg21 organizes Atg8 lipidation at the contact of the vacuole with the phagophore.
Not available
S-EPMC8205015
|
biostudies-literature
Cite
Self-interaction is critical for Atg9 transport and function at the phagophore assembly site during autophagy.
Not available
S-EPMC2592676
|
biostudies-literature
Cite
ESCRT-mediated phagophore sealing during mitophagy.
Not available
S-EPMC7158923
|
biostudies-literature
Cite
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