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MetabolomicsSystemic metabolite changes due to PHD inhibition
Not available
ORGANISM(S): Mus musculus 
ST001866 | MetabolomicsWorkbench
TranscriptomicsChromatin immunoprecipitation of wild type, SET2 deletion, Rco1 PHD domain deletion and Eaf3 chromodomain deletion yeast using anti-acetyl-histone H4
Nucleosomes must be deacetylated behind elongating RNA polymerase II to prevent cryptic initiation of transcription within the coding region. RNA polymerase II signals for deacetylation through methylation of histone H3 lysine 36 (H3K36) which provides the recruitment signal for the Rpd3S deacetylas...
ORGANISM(S): Saccharomyces cerevisiae 
2007-05-16 | E-TABM-260 | biostudies-arrayexpress
TranscriptomicsJade1 ChIP-chip on ENCODE Tiling array
Several MYST-family histone acetyltransferase (HAT) enzymes associate with specific ING tumor suppressor proteins. ING complexes containing the HBO1 HAT protein are the major source of histone H4 acetylation in vivo and have been shown to play critical roles in gene regulation and DNA replication. H...
ORGANISM(S): Homo sapiens 
2010-05-14 | E-GEOD-14309 | biostudies-arrayexpress
TranscriptomicsPHF3 regulates RNA stability through PHD and TLD domains - m6A
Transcription and RNA processing are tightly coupled and precisely coordinated to ensure appropriate levels of mature transcripts. The C-terminal domain (CTD) of RNA polymerase II (Pol II) is phosphorylated differentially during the transcription cycle and serves as a landing pad for a variety of tr...
ORGANISM(S): Homo sapiens 
2025-12-03 | E-MTAB-14529 | biostudies-arrayexpress
TranscriptomicsPHF3 regulates RNA stability through PHD and TLD domains - RNAseq PHD - TLD
Transcription and RNA processing are tightly coupled and precisely coordinated to ensure appropriate levels of mature transcripts. The C-terminal domain (CTD) of RNA polymerase II (Pol II) is phosphorylated differentially during the transcription cycle and serves as a landing pad for a variety of tr...
ORGANISM(S): Homo sapiens 
2025-12-04 | E-MTAB-14530 | biostudies-arrayexpress
GenomicsApplication of recombinant PHD domain instead of anti-H3K4me3 antibody
Application of recombinant Taf3 PHD domain instead of anti-H3K4me3 antibody in ChIP-seq-like experiments (CIDOP-seq)
ORGANISM(S): Homo sapiens 
2016-05-31 | E-MTAB-4103 | biostudies-arrayexpress
UnknownDispelling the myth: comparable duration and impact of research training for MD-PhD and PhD graduates.
Not available
S-EPMC11383590 | biostudies-literature
GenomicsPHF3 regulates RNA stability through PHD and TLD domains - RNAseq PHD - TLD
PHF3 regulates RNA stability through PHD and TLD domains - RNAseq PHD - TLD
PRJEB81153 | ENA
TranscriptomicsPHF3 regulates RNA stability through PHD and TLD domains - ChIPseq CNOT
Transcription and RNA processing are tightly coupled and precisely coordinated to ensure appropriate levels of mature transcripts. The C-terminal domain (CTD) of RNA polymerase II (Pol II) is phosphorylated differentially during the transcription cycle and serves as a landing pad for a variety of tr...
ORGANISM(S): Homo sapiens 
2025-06-13 | E-MTAB-13125 | biostudies-arrayexpress
GenomicsGenome wide localization of chromatin bound NUP98-PHF23 (NP23)
We analyzed the genome wide localization of H3K4me3, H3K27me3 and the NUP98-PHF23 (with V5 tag) fusion protein which binds H3K4me3 via its PHD finger, using ChIP-seq. Results correlated with gene expression profiles. NUP98-PHF23 bound only 1.6% of H3K4me3 marks including Hoxa/b + Meis1. Assess H3K4m...
ORGANISM(S): Mus musculus 
2014-03-06 | E-GEOD-54786 | biostudies-arrayexpress
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