Phillips J J - OmicsDI

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Unknown (3969)
Transcriptomics (64)
Proteomics (44)
Genomics (25)
Metabolomics (10)
Models (6)
Genomic (1)
Multiomics (1)
Other (1)

Organisms

Homo sapiens (55)
Andropogon gerardi (40)
Bacteria (40)
Bartonella quintana JK 31 (40)
Canis lupus familiaris (40)
Cnidaria (40)
Ensifer adhaerens (40)
Halictus scabiosae (40)
Human alphaherpesvirus 1 strain 17 (40)
Human alphaherpesvirus 1 strain KOS (40)
Human betaherpesvirus 5 (40)
Human herpesvirus 2 strain 186 (40)
Mesocricetus auratus (40)
Miscanthus x giganteus (40)
Mus musculus (40)
Panicum virgatum (40)
Platyhelminthes (40)
Pseudomonas aeruginosa PA103 (40)
Mus musculus (22)
Rattus norvegicus (5)
Yersinia pestis (4)
Arabidopsis (1)
Mammalia (1)
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Arabidopsis thaliana (1)
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Repository

biostudies-arrayexpress (65)
pride (40)
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Tissue

Brain (8)
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Disease

Alzheimer's disease (6)
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Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
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Neuronal ceroid lipofuscinosis 7 (1)
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Wounds and Injuries (1)

Technology Type

Mass Spectrometry (40)
Shotgun proteomics (30)
Mass spectrometry (8)
Affinity purification coupled with mass spectrometry proteomics (3)
Bottom-up proteomics (2)
Gel-based experiment (2)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
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Instrument Platform

Liquid Chromatography MS - positive - reverse phase (2)
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QTRAP 5500 (Applied Biosystems) (1)
2D Gas Chromatography MS – Positive (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - positive (1)
Agilent 6890 GC/5973N MSD (1)
Q Exactive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Bruker Ultraflex (1)

Publication Date

2013 (17)
2019 (13)
2008 (11)
2010 (10)
2021 (9)
2024 (8)
2017 (8)
2007 (7)
2023 (7)
2015 (6)
2022 (5)
2016 (4)
2018 (4)
2020 (3)
2014 (3)
2025 (3)
2005 (2)
2012 (2)
2011 (2)
2009 (1)
2026 (1)

UNIPROT ID/AC

Q9LQT8 (1)
Q9MAA7 (1)
O75469 (1)
P02768 (1)
P17735 (1)
P08684 (1)
P04150 (1)
P08185 (1)

ENSEMBL ID

ENSG00000198650 (1)
ENST00000355962 (1)
ENST00000336411 (1)
ENSG00000160868 (1)
ENST00000343796 (1)
ENSG00000113580 (1)
ENST00000337940 (1)
ENSG00000144852 (1)

CHEBI ID

CHEBI:15428 (5)
CHEBI:17822 (4)
CHEBI:25094 (4)
CHEBI:18237 (4)
CHEBI:18257 (4)
CHEBI:17802 (4)
CHEBI:15741 (4)
CHEBI:6650 (4)
CHEBI:28044 (4)
CHEBI:17154 (4)
CHEBI:16865 (4)
CHEBI:16335 (4)
CHEBI:17568 (4)
CHEBI:7916 (4)
CHEBI:15891 (4)
CHEBI:16704 (4)
CHEBI:18012 (4)
CHEBI:30915 (4)
CHEBI:17596 (4)
CHEBI:18089 (4)
CHEBI:29605 (1)
CHEBI:32906 (1)
CHEBI:29590 (1)
CHEBI:30088 (1)
CHEBI:32902 (1)
CHEBI:16962 (1)
CHEBI:41879 (1)
CHEBI:17650 (1)
CHEBI:16541 (1)
CHEBI:33699 (1)

Metabolite Name

Glycine (4)
Ethanolamine (3)
Pantothenic acid (3)
Phenylalanine (3)
Ribonic acid (2)
P-cresol sulfate (2)
N-acetylcitrulline (2)
Ribitol (2)
Myo-inositol (2)
Galactonic acid (2)
Hexadecanoic acid (2)
Phosphoric acid (2)
Histidine (2)
Leucine (2)
Oxalic acid (2)
Valine (2)
Niacinamide (2)
Succinic acid (2)
1-Methylhistidine (2)
Cholesterol (2)
Indole (2)
Fumaric acid (2)
Taurine (2)
Citric acid (2)
Malic acid (2)
Serine (2)
Threonine (2)
Isoleucine (2)
L-Valine (2)
Hippuric acid (2)

First Public Date

2020 (1)

Modelling Approach

Ordinary differential equation model (6)

Lab affiliation

Division of Cardiovascular Sciences, School of Medical Science, Faculty of Biology, Medicine and Health, The University of Manchester (4)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchâtel, Switzerland (3)
Departamento de Medicina Animal, Hospital Clínico Veterinario Universidad de Extremadura Avd de la Universidad s/n 10003 Cáceres SPAIN (2)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 NeuchÃƒÂ¢tel, Switzerland (part of Philip Morris International group of companies) (2)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchâtel, Switzerland (part of Philip Morris International group of companies) (2)
"Philip Morris R&D, Neuchatel, Switzerland" (1)
1Centre for Bioscience, Manchester Metropolitan University, Manchester, UK (1)
Aberystwyth University (1)
Babraham Institute, UK (1)
Cornell University, USA (1)
Department of Genome Sciences, University of Washington, Seattle, WA, United States (1)
Department of Life Sciences and Systems Biology University of Turin Italy (1)
Department of Molecular Medicine and Pathology, University of Auckland, Auckland, New Zealand (1)
Departments of Medicine (Oncology) and of Chemical and Systems Biology, Stanford School of Medicine, Stanford, CA, USA Stanford Cancer Institute, Stanford, CA, USA (1)
Departments of Neuroscience and Psychiatry, The Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA. (1)
Dept. of Biochemistry, Center for Biomedical Mass Spectrometry, Boston University 2Bioinformatics Program, Boston Universty (1)
Division of Cardiovascular Science, School of Medical Sciences, Faculty of Biology Medicine and Health, The University of Manchester (1)
Division of Cardiovascular Sciences, School of Medical Sciences, Faculty of Biology, Medicine and Health, The University of Manchester (1)
Dr. Robert Ahrends Group leader lipidomics Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Otto-Hahn-Straße 6b 44227 Dortmund, Germany (1)
Eberhard Karls University Tübingen, Institute for Ophthalmic Research (1)
Functional Proteome Analysis, German Cancer Research Center(DKFZ) (1)
Hormones & Cancer Group, Kolling Institute, University of Sydney, Sydney 2065, Australia (1)
Institute for Glycomics, Griffith University (1)
Laboratory of Equine Reproduction and Spermatology. Department of Animal Reproduction Veterinary Teaching Hospital University of Extremadura, Cáceres Spain (1)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchatel, Switzerland (1)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchatel, Switzerland (part of Philip Morris International group of companies) (1)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 NeuchÃ¢tel, Switzerland (1)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 NeuchÃ¢tel, Switzerland (part of Philip Morris International group of companies) (1)
The Proteomics Facility (1)
University of Bristol (1)

IsPrivate

False (6)

Modification

15.994915 (2)
-17.026549 (1)
-18.010565 (1)
42.010565 (1)
57.021464 (1)
Not available (1)

Study type

Transcription profiling by array (61)
RNA-seq of coding RNA (2)
Comparative genomic hybridization by array (1)
DNA-seq (1)

Release Date

2022 (420)
2021 (415)
2025 (384)
2023 (371)
2024 (352)
2020 (303)
2019 (272)
2018 (267)
2017 (193)
2016 (177)
2015 (169)
2014 (150)
2013 (116)
2012 (91)
2010 (77)
2011 (69)
2026 (54)
2009 (47)
2008 (41)
2007 (17)
2005 (13)
2004 (7)
2002 (7)
2006 (5)
2003 (5)
2001 (4)
2000 (4)
1999 (2)
1998 (1)
1979 (1)

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Sequence-dependent dynamics of synthetic and endogenous RSSs in V(D)J recombination.

Not available

S-EPMC7337519 | biostudies-literature

Structure of human J-type co-chaperone HscB reveals a tetracysteine metal-binding domain.

Not available

S-EPMC2573069 | biostudies-literature

Transcription profiling of mouse lung from individuals with airway hyperactivity and goblet cell metaplasia post-Sendai virus infection

Mice representing phenotypic extremes of airway hyperreactivity and goblet cell metaplasia post-Sendai virus infection were identified from a 500 mouse F2 cohort (CB6F2/J). Whole lung RNA from 3 mice at each extreme was analyzed via microarray for gene expression. Subsequent pairwise comparisons b...

ORGANISM(S): Mus musculus

2007-07-06 | E-GEOD-3925 | biostudies-arrayexpress

Phillips2007_AscendingArousalSystem_SleepWakeDynamics

This a model from the article: A quantitative model of sleep-wake dynamics based on the physiology of the brainstem ascending arousal system. Phillips AJ, Robinson PA. J Biol Rhythms 2007 Apr;22(2):167-79 17440218 , Abstrac...

2024-09-02 | BIOMD0000000917 | BioModels

Phillips2008_AscendingArousalSystem_Baseline

This a model from the article: Sleep deprivation in a quantitative physiologically based model of the ascending arousal system. Phillips AJ, Robinson PA. J Theor Biol 2008 Dec 21;255(4):413-23 18805427 , Abstract: ...

2005-01-01 | MODEL1006230110 | BioModels

Phillips2008_AscendingArousalSystem_SleepDeprivation

2005-01-01 | MODEL1006230115 | BioModels

A critical role for estrogen signaling in penis development.

Not available

S-EPMC6704459 | biostudies-literature

Immunization with desmoglein 3 induces non-pathogenic autoantibodies in mice.

Not available

S-EPMC8565724 | biostudies-literature

Catalytic enantioselective total syntheses of bakkenolides I, J, and S: application of a carbene-catalyzed desymmetrization.

Not available

S-EPMC2884059 | biostudies-literature