Phototrophic - OmicsDI

Show results for

Unknown (826)
Genomics (480)
Transcriptomics (70)
Proteomics (28)
Metabolomics (7)
Models (3)
Other (1)

Organisms

Rhodopseudomonas palustris (10)
Arabidopsis thaliana (9)
Homo sapiens (9)
Allochromatium vinosum DSM 180 (5)
Cereibacter sphaeroides (4)
Mus musculus (4)
Chlamydomonas reinhardtii (4)
Synechocystis sp. PCC 6803 (3)
Rattus norvegicus (2)
Dinoroseobacter shibae DFL 12 = DSM 16493 (2)
Cereibacter sphaeroides 2.4.1 (2)
Pseudomonas putida KT2440 (2)
Bacillus subtilis subsp. subtilis str. 168 (2)
Nostoc sp. PCC 7120 = FACHB-418 (1)
Brassica oleracea (1)
Cryptomonas sp. CPCC 336 (1)
Oryzias latipes (1)
Streptomyces lividans (1)
mixed sample (1)
Bos taurus (1)
Glycine max (1)
Sus scrofa (1)
Porphyrobacter sp. ULC335 (1)
Trichormus variabilis ATCC 29413 (1)
Rhodopseudomonas palustris CGA009 (1)
phototrophic enrichment culture UCC-O (1)
Pseudomonas syringae pv. syringae B728a (1)
Phaeodactylum tricornutum (1)
Synechococcus elongatus PCC 7942 = FACHB-805 (1)
Rhodobacter capsulatus SB 1003 (1)

Organisms

hot springs metagenome (69)
hypersaline lake metagenome (28)
estuary metagenome (17)
Rhodopseudomonas palustris (9)
uncultured phototrophic eukaryote (5)
microbial mat metagenome (5)
bioreactor metagenome (4)
Allochromatium vinosum DSM 180 (3)
Poteriospumella lacustris (3)
uncultured marine phototrophic eukaryote (3)
Rhodopseudomonas palustris TIE-1 (3)
Cereibacter sphaeroides (3)
Cereibacter sphaeroides 2.4.1 (3)
Synechocystis sp. PCC 6803 (3)
Bacteria (3)
Chlamydomonas reinhardtii (3)
Porphyrobacter sp. ULC335 (2)
Sphingomonas sp. AAP5 (2)
Rhodoferax antarcticus ANT.BR (2)
Thiohalocapsa marina (2)
Dinoroseobacter shibae DFL 12 = DSM 16493 (2)
Escherichia coli str. K-12 substr. W3110 (2)
tailings metagenome (2)
freshwater metagenome (2)
lake water metagenome (2)
soil metagenome (2)
Candidatus Chlorohelix allophototropha (1)
Marinomonas primoryensis (1)
Sandarakinorhabdus sp. AAP62 (1)
Rhodovulum sp. PH10 (1)

Repository

ENA (479)
biostudies-arrayexpress (45)
geo (27)
pride (21)
MetaboLights (6)
MassIVE (5)
BioModels (3)
GNPS (1)
iProX (1)
PanoramaPublic (1)

Tissue

Photosynthetic cell (4)
Cell culture (2)
Culture condition:-grown cell (1)
Seedling (1)
Plant cell (1)
Cell suspension culture (1)
Rosette (1)

Technology Type

Mass Spectrometry (21)
Shotgun proteomics (15)
Mass spectrometry (5)
Data-dependent acquisition (2)
Bottom-up proteomics (2)
Mass spectrometry assay (1)
Data-independent acquisition (1)
Top-down proteomics (1)

Instrument Platform

TripleTOF 6600 (3)
Illumina NovaSeq 6000 (2)
LTQ Orbitrap Elite (2)
5975C Series GC/MSD (Agilent) (2)
Photo BioLector prototype (Morschett et al., 2017) Design and validation of a parallelized micro-photobioreactor enabling phototrophic bioprocess development at elevated throughput. Biotechnol Bioeng 114: 122-131. (1)
Commercial BioLector (m2p labs GmbH, Baesweiler, Germany) (1)
418 [Affymetrix] (1)
MinION (1)
Illumina HiSeq 1500 (1)
Q Exactive (1)
Liquid Chromatography MS - positive - normal-phase (1)
Liquid Chromatography MS - negative - normal-phase (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2013 (14)
2017 (9)
2014 (9)
2024 (8)
2026 (8)
2022 (8)
2015 (8)
2012 (8)
2023 (7)
2010 (6)
2021 (4)
2008 (4)
2019 (4)
2025 (4)
2016 (3)
2005 (2)
2011 (1)
2009 (1)
2007 (1)
2018 (1)

CHEBI ID

CHEBI:33942 (2)
CHEBI:17992 (2)
CHEBI:16551 (2)
CHEBI:4167 (2)
CHEBI:17895 (2)
CHEBI:17295 (2)
CHEBI:16414 (2)
CHEBI:16335 (2)
CHEBI:16708 (2)
CHEBI:62510 (1)
CHEBI:24846 (1)
CHEBI:89628 (1)
CHEBI:27371 (1)
CHEBI:28825 (1)
CHEBI:45212 (1)
CHEBI:28518 (1)
CHEBI:17544 (1)
CHEBI:30835 (1)
CHEBI:16489 (1)
CHEBI:1230 (1)
CHEBI:6731 (1)
CHEBI:10642 (1)
CHEBI:24265 (1)
CHEBI:69061 (1)
CHEBI:16457 (1)
CHEBI:72998 (1)
CHEBI:30768 (1)
CHEBI:18183 (1)
CHEBI:17306 (1)
CHEBI:16199 (1)

Metabolite Name

2-O-(alpha-D-glucopyranosyl)-D-glycerate (1)
3-hydroxypentanoic acid (1)
Β-alanine betaine (1)
(16:0)1-palmitoyl-sn-glycero-3-phosphocholine (1)
L-proline betaine (1)
N(omega),N(omega)-dimethyl-L-arginine (1)
Glycine betaine (1)
S,S-dimethyl-beta-propiothetin (1)
Homarine (1)
Trehalose (1)
3-hydroxybutyric acid (1)
Ectoine (1)
Alanine betaine (1)
Gluconate (1)
D-glucose (1)
L-tyrosine (1)
L-proline (1)
Glycerol (1)
Sucrose (1)
L-phenylalanine (1)
L-valine (1)
Trigonelline (1)
L-arginine (1)
Taurine (1)
Adenosine (1)
Adenine (1)
Guanine (1)
Creatine (1)

First Public Date

2014 (80)
2019 (74)
2013 (51)
2020 (41)
2024 (40)
2026 (33)
2022 (25)
2021 (23)
2025 (22)
2018 (22)
2023 (19)
2017 (18)
2016 (16)
2015 (14)
2010 (1)

Modelling Approach

Constraint-based model (2)

Lab affiliation

Pacific Northwest National Laboratory (2)
Institution of Plant and Microbial Biology, Academia Sinica, Taipei (1)
Laboratory of Applied Microbiology (LMA), Department for Environmental Constructions and Design (DACD), University of Applied Sciences and Arts of Southern Switzerland (SUPSI), via Mirasole 22a, Bellinzona, Switzerland (1)
Molecular Proteomics Laboratory (MPL) Biologisch-Medizinisches Forschungszentrum (BMFZ) Heinrich-Heine-Universität Düsseldorf Universitätsstraße 1 40225 Düsseldorf (1)
Molecular Biology and Biotechnology, University of Sheffield, UK (1)
Department of Molecular Biology and Biotechnology, The University of Sheffield, UK. (1)
School of Biological Sciences, University of East Anglia, Norwich, NR4 7TJ, United Kingdom. (1)
Depatment Biology I (1)
Murray and Martha Ross Professor of Environmental Sciences, Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA USA (1)
GEMAP (GI-1243), Departamento de Edafoloxía e Química Agrícola, Facultade de Farmacia, Universidade de Santiago de Compostela, Santiago de Compostela, 15782, Spain. CRETUS, Universidade de Santiago de Compostela, Santiago de Compostela, Spain. (1)
Department of Geoscience, University of Calgary, Calgary Ab, Canada (1)
Institute of Microbiology, The Czech Academy of Sciences, Třeboň, Czech Republic (1)
Microbial Markets Lab, Department of Earth, Energy, and Environment, University of Calgary, Calgary, AB, Canada (1)
Department of Geoscience, University of Calgary, Calgary Ab,Canada (1)
Department of Geoscience, University of Calgary (1)
School of Biosciences, University of Sheffield, UK (1)
University of Washington, USA (1)
Chemical & Biological Engineering, University of Sheffield, UK (1)
Laboratory of proteomic and microbiology, University of Mons, Belgium (1)
Plant Proteomics Group, Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, 14476 Potsdam-Golm, Germany (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (1)

Classification

bacteria (5)

Study type

Transcription profiling by array (35)
RNA-seq of coding RNA (7)
Methylation profiling by array (2)
DNA-seq (1)

Release Date

2019 (75)
2022 (74)
2021 (73)
2017 (64)
2025 (57)
2018 (57)
2023 (54)
2020 (53)
2016 (50)
2024 (48)
2013 (37)
2015 (35)
2014 (34)
2011 (26)
2012 (24)
2010 (20)
2008 (15)
2005 (11)
2006 (10)
2009 (9)
2007 (9)
2026 (8)
2004 (6)
2003 (5)
1999 (5)
2000 (4)
2001 (3)
2002 (2)
1998 (2)
1997 (1)

Previous page
1 / 142
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 142
Next page

Sort by:

Relevance

Page size

Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions

Microbial autotroph-heterotroph interactions influence biogeochemical cycles on a global scale, but the diversity and complexity of natural systems and their intractability to in situ manipulation make it challenging to elucidate the principles governing these interactions. The study of assembling p...

2014-06-24 | MTBLS75 | MetaboLights

Retrograde bilin signaling enables Chlamydomonas greening and phototrophic survival

Here we show that the phytochrome-less chlorophyte Chlamydomonas reinhardtii retains a functional pathway to synthesize the linear tetrapyrrole (bilin) precursor of the phytochrome chromophore. Reverse genetic, metabolic inactivation and bilin rescue experiments establish that this pathway is needed...

ORGANISM(S): Chlamydomonas reinhardtii

2013-01-10 | E-GEOD-40031 | biostudies-arrayexpress

RNA-seq of Cryptomonas sp. under phototrophic and glucose supplemented phototrophic conditions, together with 3 dissolved organic carbon concentrations

Cryptomonas sp. was grown under phototrophic conditions, glucose supplemented phototrophic conditions and 3 different dissolved organic carbon (DOC) concentrations: 1.5, 30 and 90 mg C l−1. The objective was to study the adaptations that make Cryptomonas sp. thrive under high DOC conditions.

ORGANISM(S): Cryptomonas sp. CPCC 336

2022-07-12 | E-MTAB-11370 | biostudies-arrayexpress

uncultured phototrophic eukaryote

uncultured phototrophic eukaryote overview

PRJNA83893 | ENA

Phototrophic bacterial diversity in gujarat, India

PRJEB35564 | ENA

Phototrophic bacterial diversity in Gujarat, India

PRJEB35580 | ENA

Phototrophic bacterial diversity of gujarat, India

PRJEB35590 | ENA

Phototrophic bacterial diversity in Gujarat, India