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TranscriptomicsExpression analysis of Sphingomonas paucimobilis sp. EPA505 during biodegradation kinetics of various PAHs and detection of gene in a contaminated soil S3
Studying eight enzymes involved in the degradation of polycyclic aromatic hydrocarbons from the model strain Sphingomonas paucimobilis sp. EPA505 using a designed microarray of 8,048 probes. During the biodegradation kinetics with phenanthrene, fluoranthene or a mix of both pollutants, we identified...
ORGANISM(S): Sphingomonas paucimobilis 
2010-10-01 | E-GEOD-21402 | biostudies-arrayexpress
MetabolomicsInhibition of anaerobic digestion by various ammonia sources resulted in subtle differences in metabolite dynamics

The impact of ammonia on anaerobic digestion performance and microbial dynamics has been extensively studied, but the concurrent effect of anions brought by ammonium salt should not be neglected. This paper studied this effect using metabolomics and a time-course statistical framework. Metabolomi...

2024-03-01 | MTBLS7859 | MetaboLights
TranscriptomicsTranscription profiling of mouse male embryos treated with DMSO or 17beta-estradiol in wild type or ERalpha knock outs to assess the toxic effects of oestrogen exposure in fetal testis
assess the toxicogenomic effets of estrogen exposure in fetal testis
ORGANISM(S): Mus musculus 
2007-10-09 | E-TABM-275 | biostudies-arrayexpress
TranscriptomicsComparative genomic profile of human brain microvascular endothelial cells upon TWEAK or TNFα stimulation at 3h, 12h, and 24h
The molecular mechanisms playing a role in TWEAK versus TNFɑ signaling on cerebral microvascular endothelial cells are not well defined. Therefore, we aimed to identify gene expression changes in cultures of human brain microvascular endothelial cells (hCMEC/D3) to address changes initiated by TWEAK...
ORGANISM(S): Homo sapiens 
2022-10-20 | E-MTAB-12222 | biostudies-arrayexpress
TranscriptomicsGene expression profiling of patient-derived glioblastoma stem cell cultures
To identify proneural, neural, classical and mesenchymal gene expression signature (Verhaak's classification) in human glioblastoma, a microarray analysis on 16 patient-derived glioblastoma stem cell cultures was performed.
ORGANISM(S): Homo sapiens 
2018-06-26 | E-MTAB-6408 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabdiopsis wild type and G'4-3 seeds grown with different nitrate concentrations to investigate effects on seed dormancy
Freshly harvested Arabidopsis seeds (ecotype Col0 obtained under 10 mM nitrate nutrition, referred to as C10 seeds) are dormant and do not germinate when sown on an agarose-based medium. However, when C10 seeds are sown on 10mM nitrate or when Col0 mother plants are grown on 50 mM nitrate (referred...
ORGANISM(S): Arabidopsis thaliana 
2007-01-31 | E-MEXP-447 | biostudies-arrayexpress
UnknownElectrostriction: it is just a phase.
Not available
S-EPMC12749298 | biostudies-literature
MetabolomicsGut microbiota and fermentation-derived branched chain hydroxy acids mediate health benefits of yogurt consumption in obese mice
Meta-analyses suggest that yogurt consumption reduces type 2 diabetes incidence in humans, but the molecular basis of these observations remains unknown. Here we show that dietary yogurt intake preserves whole-body glucose homeostasis and prevents hepatic insulin resistance and liver steatosis in a ...
2022-02-03 | MTBLS442 | MetaboLights
TranscriptomicsTranscription profiling of human enterocytes cultured with different dietary lipids
The present study aimed to identify the specific impact of dietary lipids-containing micelles on gene expression in enterocytes.
ORGANISM(S): Homo sapiens 
2008-08-27 | E-MEXP-1446 | biostudies-arrayexpress
TranscriptomicsAssessing the importance of target type for oligonucleotide microarray experiments
In order to assess the effect on signal variability of the type of target used for oligonucleotide microarray experiments, we hybridized double and single stranded DNA of three genes on a Nimblegen High Density microarray. This slide carries specific probes (two lengths: 30 and 50 nucleotides, for a...
ORGANISM(S): Dehalococcoides sp. VS 
2010-07-27 | E-GEOD-23168 | biostudies-arrayexpress
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