Pillai A A - OmicsDI

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Unknown (1367)
Transcriptomics (44)
Proteomics (17)
Genomics (7)
Metabolomics (2)

Organisms

Homo sapiens (29)
Mus musculus (17)
Bombyx mori (4)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (2)
Salmonella enterica subsp. enterica serovar Typhimurium (2)
Danio rerio (2)
Theileria annulata (1)
Chlamydomonas reinhardtii (1)
Bos taurus (1)
Drosophila melanogaster (1)
Arabidopsis thaliana (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Bacteria (1)
Corynebacterium glutamicum ATCC 13032 (1)
Escherichia coli (1)
Pseudomonas putida KT2440 (1)

Organisms

Homo sapiens (4)

Repository

biostudies-arrayexpress (46)
pride (16)
ENA (5)
GNPS (1)
MassIVE (1)
MetaboLights (1)

Tissue

Epithelial cell (10)
Testis (2)
Cell culture (1)
Sperm (1)
Spermatogonium (1)

Disease

Colon cancer (9)
Normal (1)
Breast cancer (1)
Esophageal adenosquamous carcinoma (1)

Technology Type

Mass Spectrometry (16)
Affinity purification coupled with mass spectrometry proteomics (7)
Shotgun proteomics (5)
Data-dependent acquisition (2)
Mass spectrometry (1)
Bottom-up proteomics (1)
Gel-based experiment (1)

Instrument Platform

Ion Torrent S5 XL (1)
Q Exactive Plus (1)
TripleTOF 5600 (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2015 (14)
2013 (9)
2019 (9)
2014 (6)
2012 (5)
2011 (5)
2010 (5)
2022 (3)
2009 (2)
2025 (2)
2026 (2)
2008 (1)
2023 (1)
2021 (1)

CHEBI ID

CHEBI:10136 (1)
CHEBI:104017 (1)
CHEBI:125536 (1)
CHEBI:131608 (1)
CHEBI:131665 (1)
CHEBI:131690 (1)
CHEBI:131692 (1)
CHEBI:131743 (1)
CHEBI:132448 (1)
CHEBI:133094 (1)
CHEBI:133221 (1)
CHEBI:133530 (1)
CHEBI:133626 (1)
CHEBI:133834 (1)
CHEBI:134254 (1)
CHEBI:134287 (1)
CHEBI:134442 (1)
CHEBI:134444 (1)
CHEBI:135349 (1)
CHEBI:135758 (1)
CHEBI:136542 (1)
CHEBI:136851 (1)
CHEBI:137056 (1)
CHEBI:137227 (1)
CHEBI:137228 (1)
CHEBI:138089 (1)
CHEBI:138421 (1)
CHEBI:138517 (1)
CHEBI:138522 (1)
CHEBI:138531 (1)

Metabolite Name

(-)-Epigallocatechin 3-gallate 7-glucoside 4-glucuronide" (1)
(1(10)E,4a,5E)-1(10),5-Germacradiene-12-acetoxy-4,11-diol (1)
(10beta-aH,11xi)-11-Hydroxy-13-nor-6-eremophilen-8-one (1)
(1R,16Z,24E,26E,28Z)-1,18-dihydroxy-12-[1-(4-hydroxy-3-methoxycyclohexyl)propan-2-yl]-19,30-dimethoxy-15,17,21,23,29-pentamethyl-35-methylidene-11,36-diox4-azatricyclo[30.3.1.0,]hexatriacont16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(24E)-3alpha-a,15alpha-Diacetoxy-23-oxo-7,9(11),24-lanostatrien-26-oic acid (1)
(2E)-Pentadecenoyl-CoA (1)
(2E,8Z)-Decadiene-4,6-diyn-1-yl 3-methylbutanoate (1)
(2RS,5RS)-(E)-2-(2-Phenylethenyl)-1,3-dioxan-5-ol (1)
(2S,6R,10R)-Trimethyl-hendecanoyl-CoA (1)
(3a,5b,7a)-23-Carboxy-7-hydroxy-24-norcholan-3-yl-b-D-Glucopyranosiduronic acid (1)
(3b,16a,20R)-25-Acetoxy-3,16,20,22-tetrahydroxy-5-cucurbiten-11-one 3-glucoside (1)
(3b,24R,25x)-26-Benzoyloxystigmast-5-ene-3-ol (1)
(3b,9R)-5-Megastigmene-3,9-diol 9-[apiosyl-(1->6)-glucoside] (1)
(5-ethenyl-2-hydroxyphenyl)oxidanesulfonic acid (1)
(6E,8E,10R,12Z)-10-Hydroxy-3-oxooctadecatrienoic acid (1)
(S)-Annocherine A (1)
(S)-Edulinine (1)
(S)-Nerolidol 3-O-[L-Rhamnopyranosyl-(1->4)-L-rhamnopyranosyl-(1->2)-[L-rhamnopyranosyl-(1->6)]-b-D-glucopyranoside] (1)
(Z)-9-Cycloheptadecen-1-one (1)
(all-E)-6'-Apo-y-caroten-6'-al (1)
({6-[5,7-dihydroxy-4-oxo-8-(3,4,5-trihydroxyoxan-2-yl)-2-(2,4,5-trihydroxyphenyl)-4H-chromen-6-yl]-3,4,5-trihydroxyoxan-2-yl}methoxy)sulfonic acid (1)
1,1'-(Tetrahydro-6hydroxy-2,3a,5-trimethylfuro[2,3-d]-1,3-dioxole-2,5-diyl)bis-ethanone (1)
1,2-Dihydro-1,1,6-trimethylnaphthalene (1)
1-(1-Methylethenyl)-4-(1-methylethyl)benzene (1)
1-(5Z,8Z,11Z,14Z,17Z-eicosapentaenoyl)-glycero-3-phosphate (1)
1-(8Z,11Z,14Z-eicosatrienoyl)-glycero-3-phosphate (1)
1-Acetoxy-2-hydroxy-16-heptadecyn-4-one (1)
1-Methyl-4-nitroimidazole (1)
1-Phenyl-2-hexanone (1)
1-Stearoylglycerophosphocholine (1)

First Public Date

2024 (3)
2026 (1)
2018 (1)

Study type

Transcription profiling by array (27)
RNA-seq of non coding RNA (9)
Other (3)
RNA-seq of coding RNA (3)
ChIP-seq (2)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)

Release Date

2021 (162)
2022 (149)
2024 (138)
2023 (136)
2025 (130)
2020 (105)
2018 (85)
2019 (80)
2017 (72)
2015 (57)
2016 (50)
2014 (49)
2012 (38)
2013 (31)
2010 (30)
2011 (29)
2026 (19)
2009 (15)
2008 (12)
2006 (7)
2005 (6)
2007 (4)
2004 (3)
2003 (2)
2002 (2)
2001 (1)
1999 (1)

Lab affiliation

Core Facility for Medical Bioanalytics Proteomics Platform Tübingen (PxP) Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen Elfriede-Aulhorn-Str. 7 D-72076 Tuebingen. Germany. (7)
Cambridge Institute for Medical Research, Department of Clinical Neurosciences, Clinical School, University of Cambridge, Cambridge, CB2 0XY, UK (1)
Core Facility for Medical Bioanalytics Proteomics Platform Tübingen (PxP) Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen Elfriede-Aulhorn-Str. 7 D-72076 Tuebingen. Germany. (1)
Core Facility for Medical Bioanalytics Proteomics Platform Tübingen (PxP) Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen Elfriede-Aulhorn-Str. 7 D-72076 Tuebingen. Germany (1)
Department of Bioprocess Engineering (150k), Institute of Food Science and Biotechnology (150), University of Hohenheim, Fruwirthstr. 12, 70599 Stuttgart, Germany (1)
Department of Molecular and Cellular Biology, University of Geneva, Switzerland (1)
Departments of Radiation Oncology, The University of Michigan Medical School, Ann Arbor, Michigan 48109. (1)
Otto Krayer Professor Department of Systems Biology Head of the Harvard Program in Therapeutic Sciences - HiTS Harvard Medical School (1)
Rajiv Gandhi Centre for Biotechnology Thycaud PO Poojappura Thiruvananthapuram Kerala 695 014, India (1)
Section of Rheumatology and The Knapp Center for Lupus and Immunology Research, Department of Medicine, The University of Chicago, Chicago, IL, USA. (1)

Tags

xref:PubMed:38521065 (3)
xref:PubMed:30462273 (1)

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Hyperhomocysteinemia-related serum metabolome alterations not normalized by short-term folic acid treatment

Introduction

Hyperhomocysteinemia (HHCys) is an independent risk factor for various diseases such as cardiovascular diseases, Alzheimer's, and cancers. Folate deficiency is one of the significant reasons for HHCys. However, it is not known whether folate deficiency with HHCys is associated w...

2022-02-07 | MTBLS2150 | MetaboLights

Risk of malaria associated with travel to malaria-endemic areas to visit friends and relatives: a population-based case-control study.

Not available

S-EPMC6996033 | biostudies-literature

Reconstruction of proto-vertebrate, proto-cyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution.

Not available

S-EPMC8302630 | biostudies-literature

RNA clamping by Vasa assembles a piRNA Amplifier complex on transposon transcripts

Germline-specific Piwi-interacting RNAs (piRNAs) protect the genome against selfish genetic elements and are essential for fertility in animals. piRNAs targeting active transposons are amplified by a feed-forward loop known as the Ping-pong cycle, which links endonucleolytic slicing of target RNA...

ORGANISM(S): Bombyx mori

2014-06-04 | E-GEOD-57420 | biostudies-arrayexpress

Antigen receptor repertoires of one of the smallest known vertebrates.

Not available

S-EPMC7775753 | biostudies-literature

Striking Immune Phenotypes in Gene-Targeted Mice Are Driven by a Copy-Number Variant Originating from a Commercially Available C57BL/6 Strain.

Not available

S-EPMC4892502 | biostudies-literature

A Unifying Mechanism of Shared Splicing Aberrations in Splicing Factor Mutant Cancer

PRJNA1425557 | ENA

Engineering an autonomous VH domain to modulate intracellular pathways and to interrogate the eIF4F complex.

Not available

S-EPMC9388512 | biostudies-literature

Salmonella Typhimurium LT2: Control versus naringenin

Salmonellosis is one of the leading health problems worldwide. With the rise of drug resistance strains it has become imperative to identify alternative strategies. Naringenin, a flavonone, is present predominantly in grapefruit. Previously we have demonstrated that naringenin is potent inhibitor of...

ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

2011-05-05 | E-GEOD-21873 | biostudies-arrayexpress

Effect of obacunone on Salmonella Typhimurium transcriptome

Obacunone is a limonoids present in Citrus species. We previously reported that obacunone was inhibitory to the cell-cell signaling in Vibrio harveyi and Escherichia coli O157:H7. In the present work we evaluated the effect of obacunone on the food borne pathogen Salmonella Typhimurium LT2 using cDN...

ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

2012-08-21 | E-GEOD-37234 | biostudies-arrayexpress

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1437 Results

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