Pks - OmicsDI

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Unknown (1743)
Genomics (144)
Transcriptomics (25)
Proteomics (23)
Metabolomics (9)
Clinical (1)
Multiomics (1)

Organisms

Mus musculus (12)
Aerococcus urinae NBRC 15544 = CCUG 36881 (12)
Alteromonadales (12)
Bacteria (12)
Canis lupus familiaris (12)
Carya cathayensis (12)
Ectopseudomonas oleovorans CECT 5344 (12)
Ensifer adhaerens (12)
Enterococcus faecalis (12)
Globicatella sanguinis (12)
Halictus scabiosae (12)
Histomonas meleagridis (12)
Human immunodeficiency virus 1 (12)
Homo sapiens (7)
Fusarium fujikuroi (4)
Escherichia coli (3)
Burkholderia ambifaria (1)
Clostridium acetobutylicum (1)
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Streptomyces hygroscopicus (1)
Amphidinium carterae (1)
Burkholderia thailandensis (1)
Carya illinoinensis (1)
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Caenorhabditis elegans (1)
Kitasatospora aureofaciens (1)
Schizochytrium sp. TIO1101 (1)
Streptomyces albus J1074 (1)
Streptomyces lividans TK24 (1)
Streptomyces (1)

Organisms

Exophiala dermatitidis (6)
Mus musculus (6)
Streptomyces hygroscopicus (3)
Escherichia coli (3)
Okeania hirsuta (2)
Streptomyces hygroscopicus subsp. sporocinereus (2)
Streptomyces hygroscopicus subsp. hygroscopicus (2)
Fusarium fujikuroi (2)
Bacillus velezensis (2)
Homo sapiens (2)
Streptomyces sp. 196(2019) (1)
Nostoc sp. ATCC 43529 (1)
Bacidia rubella (1)
Fusarium fujikuroi IMI 58289 (1)
Lacinutrix sp. WUR7 (1)
Ramalina conduplicans (1)
Cystobacter ferrugineus (1)
Aspergillus affinis (1)
Streptomyces phaeochromogenes (1)
Flammulina (1)
Escherichia coli ATCC 25922 (1)
Anaeromyces robustus (1)
Pseudomonas sp. PKS (1)
Actinomadura sp. WMMB-499 (1)
Streptomyces globisporus (1)
Pochonia chlamydosporia (1)
Micromonospora sp. NBRC 110037 (1)
Streptomyces sp. NBRC 110028 (1)
Streptomyces sp. NBRC 110611 (1)
Rhizomonospora bruguierae (1)

Repository

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Tissue

Cell culture (1)
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Disease

Colorectal Neoplasms (1)

Technology Type

Mass Spectrometry (12)
Bottom-up proteomics (6)
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Shotgun proteomics (4)
Mass spectrometry (3)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
SWATH MS (1)

Instrument Platform

Xevo G2 Q-Tof (3)
Q Exactive HF-X (2)
Illumina HiSeq 4000 (1)
Impact (1)
LCQ Advantage (1)
LTQ FT (1)
MicrOTOF-Q II (1)
Orbitrap Eclipse (1)
1200 series LC/MSD SL (1)
Agilent 6890N/5973inert (1)
Q Exactive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

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2012 (6)
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2017 (4)
2013 (4)
2026 (3)
2022 (3)
2009 (2)
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2019 (2)
2018 (2)
2014 (2)
2011 (1)
2007 (1)
2020 (1)
2015 (1)

UNIPROT ID/AC

1FEH1_WHEAT (2)
4565.Traes_1AL_3CF82DD08.2 (2)
4565.Traes_1AL_3FDB6FDB4.1 (2)
4565.Traes_1AL_44FB362A9.2 (2)
4565.Traes_1AL_4E621A250.2 (2)
4565.Traes_1AL_51D597B92.1 (2)
4565.Traes_1AL_52E56C8D3.1 (2)
4565.Traes_1AL_53F3380AF.1 (2)
4565.Traes_1AL_5E2C30B46.1 (2)
4565.Traes_1AL_6B64D0E80.1 (2)
4565.Traes_1AL_72202D9DF.1 (2)
4565.Traes_1AL_738358449.1 (2)
4565.Traes_1AL_78CB13657.2 (2)
4565.Traes_1AL_7B509569F.1 (2)
4565.Traes_1AL_7CF571E9F.1 (2)
4565.Traes_1AL_7D6DC73FC.2 (2)
4565.Traes_1AL_9C2D7A0A6.1 (2)
4565.Traes_1AL_9EFC68149.1 (2)
4565.Traes_1AL_A47D32D30.1 (2)
4565.Traes_1AL_A69755144.1 (2)
4565.Traes_1AL_B15921488.1 (2)
4565.Traes_1AL_BAAF4391C.1 (2)
4565.Traes_1AL_BAB3D977B.1 (2)
4565.Traes_1AL_D06A380E9.2 (2)
4565.Traes_1AL_D39C4F23A.2 (2)
4565.Traes_1AL_D789B5634.1 (2)
4565.Traes_1AL_D8B97BD8D.1 (2)
4565.Traes_1AL_D8FE82B94.1 (2)
4565.Traes_1AL_E07235CF1.1 (2)
4565.Traes_1AL_EEB8BBB6B.1 (2)

CHEBI ID

CHEBI:167190 (1)
CHEBI:167189 (1)
CHEBI:167188 (1)
CHEBI:167187 (1)
CHEBI:167186 (1)
CHEBI:167185 (1)
CHEBI:196951 (1)
CHEBI:196950 (1)

Metabolite Name

2,2',2''-((2R,5R,8S,11R)-11-((2R,4S,5E,7E,9E)-2,4-dihydroxypentadeca-5,7,9-trien-1-yl)-3,6,9,13,17-pentaoxo-1,4,7,10,14-pentaazacycloheptadecane-2,5,8-triyl)triacetamide (1)
(3R,5R,7S,8E,10E,12E)-3-amino-5,7-dihydroxyoctadeca-8,10,12-trienoic acid (1)
(3-((3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienamido)propanoyl)-D-asparaginyl-D-asparagine (1)
(3-((3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienamido)propanoyl)-D-asparagine (1)
3-((3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienamido)propanoic acid (1)
(3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienoic acid (1)
E-5-(2-methylphenyl)-4-pentenoic acid (1)
Globisporamic Acid (1)
Cer 18:1;O2/4:0 (1)
SM 18:1;O2/6:0 (1)
CL 14:1_14:1_14:1_14:1 (1)
PE 20:4_20:4 (1)
PG 20:4_20:4 (1)
LPG 13:0 (1)
LPE 13:0 (1)
SPB 28:0;O2 (1)
SPB 24:0;O2 (1)
SPB 26:0;O2 (1)

First Public Date

2025 (27)
2020 (15)
2026 (14)
2016 (11)
2024 (10)
2021 (10)
2015 (9)
2017 (8)
2022 (7)
2023 (6)
2019 (6)
2013 (6)
2018 (4)
2014 (2)
2012 (1)

Classification

fungi (11)
bacteria (6)
protozoa (1)

Study status

Not provided (1)

Study type

Transcription profiling by RT-PCR (4)
Transcription profiling by array (3)
RNA-seq of coding RNA (2)
Transcription profiling by SAGE (1)
ChIP-seq (1)
Observational (1)

Release Date

2022 (201)
2021 (176)
2023 (173)
2020 (145)
2018 (133)
2024 (126)
2025 (108)
2019 (108)
2017 (95)
2016 (87)
2015 (70)
2014 (59)
2012 (51)
2013 (36)
2008 (28)
2010 (26)
2011 (25)
2009 (23)
2026 (20)
2006 (14)
2005 (14)
2004 (11)
2007 (8)
2003 (7)
2002 (4)
2001 (2)
1998 (2)
2000 (1)
1999 (1)

Lab affiliation

Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (6)
Ehime University (1)
Institute for Plant Sciences of Montpellier (IPSiM) (1)
Research Manager, TNO, Department CBRN protection, The Netherlands (lab head) (1)
University of North Carolina at Chapel Hill - Department of Chemistry (1)
University of Nottingham School of Life Sciences Queens Medical Centre Nottingham NG7 2UH United Kingdom (1)
Zunyi medical University (1)

Location

France (1)

Keyword

Prognostic factors (1)
Pathogenic E.coli (1)
Gut microbiota (1)

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Pseudomonas species. PKS

Pseudomonas species. PKS genome sequencing

PRJNA1121259 | ENA

RNA-seq comparison of Clostridium acetobutylicum wild-type and pks mutant under batch fermentation conditions.

The goal of this experiment is compare gene expression profiles between C. acetobutylicum wild-type and pks mutant strains to determine which genes might be under the control of self-produced polyketides. Samples for RNA-seq comparison were taken from batch fermentation cultures 26 hours post-inocul...

ORGANISM(S): Clostridium acetobutylicum

2017-09-27 | E-MTAB-6019 | biostudies-arrayexpress

Enterobacter ludwigii strain:PKS

Enterobacter ludwigii strain:PKS Genome sequencing

PRJNA1106910 | ENA

Colon tissue of Il10-/- mice monoassociated with Escherichia coli NC101 or NC101-delta-pks

We observed that deletion of polyketide synthase (pks) from E. coli NC101 reduces its ability to induce tumors in interleukin-10 knockout (Il10-/-) mice injected with azoxymethane (AOM), without altering histologic inflammation. The goal of this experiment is to assess inflammatory cytokine levels i...

ORGANISM(S): Mus musculus

2012-07-04 | E-GEOD-39095 | biostudies-arrayexpress

Engineering an Extremely Hybrid PKS for Adipic Acid Production

Polyketide synthases (PKSs) are modular enzymes with exceptional potential as biocatalysts for producing non-native compounds. Here, we report the first PKS-based pathway for adipic acid (AA), an industrial monomer for nylon production, by engineering one of the most extensively hybridized PKS syste...

ORGANISM(S): Pseudomonas putida KT2440

2026-09-07 | PXD069956 | Pride