Pl - OmicsDI

Show results for

Unknown (21298)
Transcriptomics (1644)
Genomics (503)
Proteomics (388)
Metabolomics (71)
Multiomics (13)
Models (8)
Other (4)
Clinical (2)
Genomic (1)
Methylation profiling (1)

Organisms

Homo sapiens (808)
Mus musculus (774)
Rattus norvegicus (45)
Bos taurus (17)
Drosophila melanogaster (17)
Saccharomyces cerevisiae (16)
Arabidopsis thaliana (14)
Mycobacterium tuberculosis (14)
Sus scrofa (14)
Gallus gallus (12)
Danio rerio (8)
Salmo salar (5)
Brucella canis (4)
Oryza sativa (4)
Candida albicans (4)
Macaca mulatta (4)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (3)
Yersinia pestis (3)
Schizosaccharomyces pombe (3)
Salmonella enterica subsp. enterica serovar Typhimurium (3)
Plasmodium falciparum (3)
Escherichia coli (3)
Mycobacterium avium subsp. paratuberculosis K-10 (2)
Brucella melitensis bv. 1 str. 16M (2)
Leishmania donovani (2)
Mycobacterium avium subsp. paratuberculosis (2)
Bombyx mori (2)
Leishmania major (2)
Macaca fascicularis (2)
Listeria monocytogenes (2)

Organisms

Mus musculus (57)
Homo sapiens (55)
Rattus norvegicus (8)
soil metagenome (6)
Lactiplantibacillus plantarum (3)
Drosophila melanogaster (3)
Oryza sativa (3)
Arabidopsis thaliana (3)
Serratia symbiotica (2)
Pseudomonas aeruginosa (2)
Plasmopara viticola (2)
Piper sarmentosum (2)
Alteromonas macleodii (2)
permafrost metagenome (2)
seawater metagenome (2)
Solanum lycopersicum (2)
Gallus gallus (2)
food metagenome (2)
freshwater metagenome (2)
Nicotiana tabacum (2)
Escherichia coli Combat2D2 (1)
Vibrio sp. QY108 (1)
Buchnera aphidicola (Periphyllus lyropictus) (1)
Equisetum hyemale subsp. hyemale (1)
Buchnera aphidicola (1)
Bacteroides thetaiotaomicron VPI-5482 (1)
Drosophila pandora (1)
Trypanosoma brucei (1)
Mycobacterium tuberculosis variant bovis BCG (1)
Porphyromonas gingivalis (1)

Repository

biostudies-arrayexpress (1690)
ENA (348)
pride (282)
geo (96)
MetaboLights (62)
MassIVE (39)
EGA (36)
iProX (30)
PeptideAtlas (15)
jPOST (8)
BioModels (7)
MetabolomicsWorkbench (6)
GNPS (3)
dbGaP (1)
EVA (1)
FAIRDOMHub (1)
GPMDB (1)
PanoramaPublic (1)

Tissue

Cell culture (61)
Epithelial cell (19)
Brain (15)
Blood plasma (14)
Plant cell (12)
Others (11)
Blood (10)
Fibroblast (9)
Blood cell (9)
Whole body (8)
T cell (7)
Liver (7)
Skin (6)
Blood (5)
Reticulocyte (5)
Melanocyte (5)
Skeletal muscle (5)
Heart (5)
Kidney (5)
Hepatocyte (5)
Neutrophil (4)
Neuron (4)
Tooth enamel (4)
Permanent cell line cell (4)
Cell suspension culture (4)
Spleen (4)
Plasma Non-glyco (3)
Gastrocnemius (3)
Erythrocyte (3)
Brain (1)

Disease

Normal (7)
Acute myeloid leukemia (3)
Acute Myeloid Leukemia (2)
Multiple myeloma (2)
Cockayne syndrome (1)
Lymphoblastic leukemia (1)
Yersinia enterocolitica WAP infected (virulent) (1)
HIV-associated dementia (1)
Systemic lupus erythematosus (1)
Myeloid neoplasm (1)
Invasive Ductal Carcinoma (1)
No injury (1)
Schizophrenia (1)
Mild asthma (1)
No tendon xanthomas (1)
Controled disease patient (1)
Chronic infection with geohelminth ascaris lumbricoides (1)
Represent tolerant CD4+ T cells that have not been activated (1)
Murine hemochromatosis (1)
Rheumatoid arthritis (1)
Acute myelomonocytic leukaemia (1)
Leukemia (1)
Melanoma (1)
Bordetella pertussis inoculated (1)
Infected with Leishmania amazonensis (1)
Controled disease patient (1)
Reference (1)
Lymphoma (1)
Adenocarcinoma (1)
Colorectal Neoplasms (1)

Technology Type

Mass Spectrometry (288)
Shotgun proteomics (139)
Bottom-up proteomics (50)
Mass spectrometry (40)
Affinity purification coupled with mass spectrometry proteomics (40)
Data-dependent acquisition (32)
Data-independent acquisition (28)
Mass spectrometry assay (21)
SWATH MS (18)
Gel-based experiment (13)
Top-down proteomics (10)
Chemical cross-linking coupled with mass spectrometry proteomics (9)
All-ion fragmentation (6)
ESI (4)
EI (2)
HDMSE (2)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2500 (1)
Affymetrix 6.0, Illumina_670k - Illuminus, Illumina 1.2M (1)
Illumina MiSeq (1)
NMR spectroscopy (1)
Proteogenomics (1)
Affinity proteomics (1)
Mass spectrometry imaging (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (33)
Illumina HiSeq 2000 (24)
Illumina HiSeq 2500 (19)
Illumina HiSeq 4000 (19)
NextSeq 500 (19)
Illumina HiSeq 1500 (13)
Illumina MiSeq (7)
AB SOLiD 4 System (5)
Axon- GenePix4000B (3)
NextSeq 2000 (3)
Illumina Genome Analyzer (2)
GenePix 4000A [Axon Instruments] (2)
G2565AA DNA microarray scanner [Agilent] (2)
Generation III Array Scanner [Amersham] (2)
418 [Affymetrix] (2)
GenePix 4000B [Axon Instruments] (2)
NextSeq 550 (2)
CeMM HPC (1)
Linux (1)
TruSeq stranded Total RNA kit (Illumina) (1)
The RNeasy mini kit (Qiagen) (1)
Accuracode RNA-seq Kit (1)
Microprep kit (1)
Chromium Single Cell 3’ Reagent kits v2 (1)
10X Genomics Chromium Controller (1)
Cutadapt, STAR (1)
TruSeq Stranded mRNA Sample Prep Kit (Illumina) (1)
BD InFlux Cytometer (Becton-Dickinson) (1)
Cyclone (1)
FACSAria III (1)

Publication Date

2015 (216)
2014 (206)
2010 (201)
2012 (198)
2013 (175)
2011 (148)
2016 (145)
2008 (119)
2024 (89)
2022 (87)
2009 (83)
2026 (81)
2023 (69)
2025 (67)
2021 (65)
2020 (61)
2018 (50)
2007 (49)
2019 (38)
2017 (30)
2006 (20)
2005 (18)
2004 (6)
2002 (1)
2003 (1)

UNIPROT ID/AC

P12259 (15)
Q14766-3 (14)
Q14766 (14)
Q13201 (14)
P09486 (14)
P07996 (14)
P07359 (14)
P02775 (14)
P00488 (14)
P37802 (14)
P10720 (14)
P28482 (12)
A4QPA9 (1)
P01008 (1)
P10646 (1)
P00451 (1)
P00740 (1)
P00742 (1)
P08709 (1)
P13726 (1)
P01112 (1)
P00734 (1)
P98077 (1)
P20936 (1)
Q07889 (1)
Q02750 (1)
P04049 (1)
P00533 (1)
P62993 (1)
P01133 (1)

ENSEMBL ID

ENSG00000170477 (7)
ENSG00000229353 (3)
ENSMUSP00000106991 (1)
ENSMUSP00000141542 (1)
ENSMUSG00000090272 (1)
ENSMUSG00000096833 (1)
ENSMUSG00000021039 (1)
ENSG00000147251 (1)
ENSMUSP00000141097 (1)

CHEBI ID

CHEBI:30769 (11)
CHEBI:18186 (8)
CHEBI:32816 (8)
CHEBI:16737 (8)
CHEBI:18257 (8)
CHEBI:27266 (7)
CHEBI:15728 (7)
CHEBI:18237 (7)
CHEBI:25017 (7)
CHEBI:18012 (7)
CHEBI:6650 (7)
CHEBI:15354 (7)
CHEBI:17368 (7)
CHEBI:24898 (6)
CHEBI:26271 (6)
CHEBI:22660 (6)
CHEBI:28044 (6)
CHEBI:71466 (6)
CHEBI:17154 (6)
CHEBI:16027 (6)
CHEBI:17568 (6)
CHEBI:17533 (6)
CHEBI:44897 (6)
CHEBI:64561 (6)
CHEBI:16704 (6)
CHEBI:18132 (6)
CHEBI:17015 (6)
CHEBI:6801 (2)
CHEBI:15996 (1)
CHEBI:17552 (1)

Metabolite Name

L-Threonine (19)
Inosine (18)
PL (17)
Taurine (17)
Xanthosine (16)
Deoxyinosine (16)
L-Tyrosine (15)
L-Histidine (15)
L-Tryptophan (15)
L-Glutamine (15)
Porphobilinogen (15)
Riboflavin (15)
Xanthine (15)
Uridine (15)
Cortolone (14)
Pantothenic Acid (14)
Thymidine (14)
3-Hydroxybenzoic Acid (13)
L-Phenylalanine (13)
Oxypurinol (13)
Adenine (13)
L-Serine (13)
2'-Deoxyuridine (12)
Hypoxanthine (12)
Tetradecanedioic acid (12)
Cytosine (12)
Citrulline (12)
Stachyose (12)
Zeranol (12)
Kinetensin 4-7 (11)

First Public Date

2026 (48)
2025 (43)
2024 (43)
2023 (35)
2020 (35)
2022 (27)
2014 (27)
2021 (22)
2018 (20)
2019 (16)
2017 (13)
2013 (7)
2016 (6)
2015 (6)

Modelling Approach

Ordinary differential equation model (5)
Protein-protein interaction network (1)
Stochastic differential equation model (1)

Study status

Not provided (1)
Completed (1)

Lab affiliation

Department of Biochemistry, Biomedical Sciences Building, University of Bristol, Bristol, United Kingdom (5)
Proteomics, Leibniz-Institut für analytische Wissenschaften -ISAS - e.V., Germany (4)
Murray and Martha Ross Professor of Environmental Sciences, Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA USA (3)
UMB (3)
Tumor Biology Department Molecular Medicine Program Moffitt Cancer Center Tampa, FL, USA (3)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (3)
University of Edinburgh (3)
Ann Romney Center for Neurologic Diseases, Department of Neurology, Brigham and Women’s Hospital and Harvard Medical School, Boston, MA, USA (2)
ULB Neuroscience Institute (UNI) Université Libre de Bruxelles (ULB) B-6041 Gosselies, Belgium. (2)
Bioanalytics, Leibnizinstitut für analytische Wissenschaften-ISAS-e.V., Germany (2)
Department of Biochemistry and Structural Biology and Center for Innovative Drug Discovery School of Medicine, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229, United States (2)
The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA (2)
Institute of Molecular Biology, Academia Sinica (2)
Cancer Research UK Cambridge Institute University of Cambridge Li Ka Shing Centre Cambridge CB2 0RE United Kingdom (2)
Advanced Water Management Centre, The University of Queensland (2)
Department of Pediatrics, UMCG/RUG, Groningen, The Netherlands (2)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland (2)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (2)
Shanghai Institute of Materia Medica (2)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (2)
1) Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 2) Proteomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 3) Metabolomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (2)
Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry, Martinsried, Germany (1)
Advanced Water Managment Center, The University of Queensland (1)
Gene Expression Regulation Laboratory, IRCCS Ospedale Policlinico San Martino, 16132 Genova, Italy (1)
Department of Medicine, section of Physiology and Biochemistry, University of Perugia (1)
3Centers for Proteomics & Artificial Intelligence and Clinical Mass Spectrometry, Allegheny Health Network Cancer Institute, Allegheny Health Network, Pittsburgh, PA15202, USA (1)
University of Groningen Faculty of Sciences and Engineering Groningen Research Institute of Pharmacy Analytical Biochemistry (1)
College of Pharmacy, Ewha Womans University, Seoul, Korea (1)