Place J J - OmicsDI

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Unknown (12578)
Transcriptomics (647)
Proteomics (303)
Metabolomics (117)
Genomics (81)
Models (19)
Genomic (10)
Other (3)

Organisms

Homo sapiens (352)
Mus musculus (202)
Saccharomyces cerevisiae (45)
Schizosaccharomyces pombe (37)
Arabidopsis thaliana (32)
Rattus norvegicus (27)
Drosophila melanogaster (27)
Danio rerio (10)
Bos taurus (9)
Sus scrofa (9)
Triticum aestivum (7)
Candida albicans (7)
Staphylococcus aureus (7)
Rhizobium leguminosarum (6)
Caldicellulosiruptor saccharolyticus (5)
Metallosphaera sedula (4)
Salmonella enterica (4)
Macaca mulatta (4)
Caenorhabditis elegans (4)
Buchnera aphidicola (3)
Ectocarpus siliculosus (3)
Mycobacterium tuberculosis (3)
Heterocephalus glaber (3)
Mammalia (2)
Oryctolagus cuniculus (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Xenopus laevis (2)
Influenza A virus (1)
Influenza A virus (A/Puerto Rico/8/1934(H1N1)) (1)
Plasmodium knowlesi (1)

Organisms

Mus musculus (8)
Homo sapiens (5)
Jatropha tanjorensis (1)
Peribacillus psychrosaccharolyticus (1)
Aegilops tauschii (1)
Vitis vinifera (1)
Mycobacterium tuberculosis (1)
phyllosphere metagenome (1)

Repository

biostudies-arrayexpress (676)
pride (260)
MetaboLights (115)
EGA (35)
MassIVE (28)
ENA (24)
BioModels (19)
dbGaP (10)
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geo (4)
jPOST (4)
PanoramaPublic (4)
GNPS (2)
GPMDB (1)
PAXDB (1)

Tissue

Cell culture (42)
Brain (22)
Liver (10)
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Heart (7)
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Blood (3)
Blood cell (3)
Blood serum (3)
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Hepatocyte (3)
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Tooth enamel (3)

Disease

Normal (10)
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Influenza (1)
Tuberculosis (1)
Oropharynx squamous-cell carcinoma in DiseaseLocation oropharynx has DiseaseStaging lymph node negative (N0) (1)
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Not applicable (1)
Low-stage neuroblastoma (1)
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Infiltrating ductal carcinoma (1)
Mammary adenocarcinoma (pleural effusion) (1)
Raji Burkitt's lymphoma (1)
Chronic granulomatous disease (1)
Primary tumor (1)
Giant cell glioblastoma (1)
Colon cancer metastasis (1)
Rheumatoid arthritis (1)
Invasive lobular carcinoma (1)
IBDV infected (1)
Leukemia (1)
Colonic adenocarcinoma (1)
Nevus (1)
Temporal lobe epilepsy (1)
Burkitt lymphoma (1)
Mastitis (1)

Technology Type

Mass Spectrometry (260)
Shotgun proteomics (148)
Mass spectrometry (96)
Bottom-up proteomics (32)
Gel-based experiment (23)
Affinity purification coupled with mass spectrometry proteomics (20)
Data-independent acquisition (19)
Data-dependent acquisition (15)
SWATH MS (14)
Mass spectrometry assay (13)
Top-down proteomics (12)
NMR spectroscopy (9)
Chemical cross-linking coupled with mass spectrometry proteomics (8)
DiaPASEF (3)
Affinity proteomics (2)
HDMSE (2)
SRM/MRM (2)
Illumina (1)
Illumina HiSeq 2000 (1)
Illumina HumanOmni1-Quad-Illumina GenomeStudio (1)
Metaproteomics (1)
Proteogenomics (1)

Instrument Platform

Illumina NovaSeq 6000 (12)
Illumina HiSeq 2000 (11)
Axon GenePix 4000B scanning hardware (10)
Illumina HiSeq 2500 (8)
GenePix 4000B [Axon Instruments] (5)
Affymetrix Fluidics Station 400 (5)
Vortex (5)
Illumina HiSeq 4000 (4)
NextSeq 500 (4)
Pacbio Revio (2)
PromethION (2)
Nanodrop N1000 spectrophotometer (2)
ScanArray 5000 [PerkinElmer] (2)
G2565AA DNA microarray scanner [Agilent] (2)
Bioanalyser (2)
418 [Affymetrix] (2)
ScanArray Express HT [PerkinElmer] (2)
ScanArray Express HT (2)
Scanning hardware (2)
Illumina HiSeq 1000 (2)
NextSeq 550 (2)
Microarray scanner system (1)
10X Chromium Controller (1)
Agilent 2100 Bioanalyzer, Applied Biosystems 7900HT Sequence Detection System, Illumina TruSeq Small RNA Sample Preparation Kit (1)
RNeasy mini Kit, Ribo-Zero Human/Mouse/Rat kit (1)
Axon Instruments GenePix 4000B scanner (1)
Genepix (1)
Agilent 2100 Bioanalyzer (1)
ScanArray 4000 [PerkinElmer] (1)
428 [Affymetrix] (1)

Publication Date

2010 (106)
2022 (84)
2008 (72)
2024 (61)
2012 (59)
2013 (58)
2009 (58)
2015 (55)
2011 (55)
2021 (52)
2020 (50)
2026 (46)
2007 (44)
2025 (42)
2014 (39)
2006 (35)
2019 (34)
2005 (31)
2018 (30)
2016 (30)
2023 (29)
2017 (26)
2004 (20)

UNIPROT ID/AC

O14332 (1)
O14744 (1)
O14980 (1)
O95149 (1)
P03427 (1)
P03437 (1)
P03466 (1)
P03508 (1)
P05777 (1)
P06820 (1)
P08621 (1)
P09012 (1)
P09234 (1)
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P30283 (1)
P32641 (1)
P32797 (1)
P38111 (1)
P38147 (1)
P39009 (1)
P39875 (1)
P43487 (1)
P48581 (1)

CHEBI ID

CHEBI:15428 (29)
CHEBI:16335 (22)
CHEBI:16750 (22)
CHEBI:15354 (18)
CHEBI:24875 (3)
CHEBI:15422 (2)
CHEBI:18248 (2)
CHEBI:09160 (1)
CHEBI:16000 (1)
CHEBI:16038 (1)
CHEBI:16077 (1)
CHEBI:16551 (1)
CHEBI:16761 (1)
CHEBI:17553 (1)
CHEBI:17665 (1)
CHEBI:17822 (1)
CHEBI:17925 (1)
CHEBI:18066 (1)
CHEBI:18132 (1)
CHEBI:18283 (1)
CHEBI:26667 (1)
CHEBI:28087 (1)
CHEBI:37565 (1)
CHEBI:43474 (1)
CHEBI:49183 (1)
CHEBI:58189 (1)
CHEBI:72738 (1)
CHEBI:74035 (1)
CHEBI:84596 (1)
CHEBI:9160 (1)

Metabolite Name

L-Tyrosine (16)
Inosine (15)
L-Phenylalanine (15)
Glycine (14)
L-Leucine (14)
L-Tryptophan (14)
L-Valine (14)
Guanosine (13)
L-Proline (13)
Taurine (13)
Uridine (13)
Adenine (12)
Adenosine (12)
Citric acid (12)
Dodecanoic acid (12)
Glyceric acid (12)
Ornithine (12)
Succinic acid (12)
Uracil (12)
Cytosine (11)
Hypoxanthine (11)
L-Asparagine (11)
L-Isoleucine (11)
L-Methionine (11)
Myristic acid (11)
Sucrose (11)
Cytidine (10)
L-Arginine (10)
L-Serine (10)
Linoleic acid (10)

First Public Date

2014 (4)
2026 (3)
2023 (3)
2022 (3)
2017 (3)
2015 (2)
2013 (2)
2025 (1)
2024 (1)
2020 (1)
2019 (1)

Modelling Approach

Ordinary differential equation model (15)
Other (1)
Petri net (1)
Population model (1)

Lab affiliation

IMSB, ETH Zurich (4)
BioArCh, University of York, United Kingdom (3)
Fundación Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain (3)
Institute of Plant Genetics, Leibniz Universitaet Hannover, Germany (3)
Vanderbilt University Department of Chemistry (3)
Cancer Research UK Cambridge Institute University of Cambridge Li Ka Shing Centre Cambridge CB2 0RE United Kingdom (2)
Cornell University (2)
Department of Biology University of California, Riverside (2)
Institut Cochin, Inserm U 1016, CNRS UMR 8104, Université Paris Cité. (2)
Institute of Microbiology (2)
Laboratory of Molecular Basis of Synaptic Plasticity Centre of New Technologies, University of Warsaw (2)
Markus Ralser, Prof. Dr. Einstein Professor of Biochemistry Head, Institute of Biochemistry, Charité University Medicine, Berlin markus.ralser@charite.de Senior Group Leader, The Francis Crick Institute, London markus.ralser@crick.ac.uk (2)
Medical Basic Research Innovation Center for Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Nanjing Medical University, Nanjing, Jiangsu, China (2)
Newcastle University Biosciences Institute Faculty of Medical Sciences Framlington Place Newcastle upon Tyne NE2 4HH UK (2)
Shanghai Tenth People's Hospital, Tongji University School of Medicine (2)
Structural Biology MS 311, Room D1034C St. Jude Children's Research Hospital 262 Danny Thomas Place Memphis, TN 38105-3678 (2)
1 Population Health and Immunity Division, The Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC, Australia Department of Veterinary Biosciences, Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, VIC, Australia (1)
1. University of Edinburgh, Wellcome Trust Centre for Cell Biology, Edinburgh, United Kingdom. 2. Technische Universität Berlin, Institute of Biotechnology, Department of Bioanalytics, Berlin, Germany. (1)
1. University of Victoria Genome BC Proteomics Centre, University of Victoria, Victoria, British Columbia, Canada 2. Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital, McGill University, Montreal, Quebec, Canada 3. Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada 4. Gerald Bronfman Department of Oncology, Jewish General Hospital, Montreal, Quebec, Canada (1)
1: Physiology of reproduction, Veterinary Faculty, Campus of Excellence Mare Nostrum, University of Murcia. 2: IMIB-Arrixaca, Murcia, Spain. (1)
1Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (1)
1School of Pharmacy, University of Wisconsin-Madison, Madison, WI 53705, USA. Email: lingjun.li@wisc.edu 2Department of Chemistry, University of Wisconsin-Madison, Madison, WI 53705, USA. (1)
1Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Roosevelt Drive, Oxford, OX3 7FZ, UK (1)
Affiliated Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology (1)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (1)
Affiliation: Computational and Experimental Biology Group National Health Institute Dr. Ricardo Jorge, (INSA,I.P.) Av Padre Cruz, 1649-016 Lisboa-Portugal phone: 00351-217508124 (1)
Albert Resnick, M.D. Associate Professor Head, Weslie R. and William H. Janeway Laboratory of Molecular Metabolism The Rockefeller University (1)
Amyloidosis Treatment and Research Center, Fondazione IRCCS Policlinico San Matteo and University of Pavia, Italy (1)
Assistant Professor of Neurology and Angela Dobson and Lyndon Welch Professor of Neurology Department of Neurology | University of Michigan Health System 109 Zina Pitcher Place, 5015 BSRB | Ann Arbor, MI | 48109 (1)
BioArCh, Department of Archaeology, University of York, United Kingdom (1)

IsPrivate

False (19)

Submitter Keywords

COVID-19 (1)
FAIR-AIML (1)
Machine Learning Model (1)

Classification

bacteria (1)

Modification

Not available (2)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(2)H labeled dimethylated residue (1)

Study type

Transcription profiling by array (467)
RNA-seq of coding RNA (49)
Comparative genomic hybridization by array (34)
ChIP-chip by array (20)
Unknown experiment type (15)
ChIP-seq (14)
Methylation profiling by array (13)
Other (9)
ChIP-chip by tiling array (7)
RNA-seq of non coding RNA (7)
DNA-seq (5)
RNAi profiling by array (4)
RNA-seq of coding RNA from single cells (4)
MicroRNA profiling by array (3)
Transcription profiling by SAGE (2)
Transcription profiling by tiling array (2)
Proteomic profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by high throughput sequencing (1)
RNA-seq of non coding RNA from single cells (1)
Differential (1)
Human - Single-cell sequencing (1)
Translation profiling (1)
High-throughput sequencing (1)
Bisulfite-seq (1)
ScATAC-seq (1)
RNA-seq of total RNA (1)

Release Date

2022 (1463)
2023 (1290)
2021 (1274)
2024 (1133)
2020 (1127)
2025 (1024)
2019 (886)
2018 (745)
2017 (652)
2015 (554)
2016 (499)
2014 (420)
2013 (342)
2012 (295)
2010 (292)
2011 (265)
2009 (229)
2008 (180)
2026 (143)
2007 (131)
2006 (106)
2005 (74)
2004 (45)
2003 (27)
2001 (15)
2002 (12)
1998 (11)
1999 (9)
2000 (7)
1997 (3)

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Saproamanita, a new name for both Lepidella E.-J. Gilbert and Aspidella E.-J. Gilbert (Amaniteae, Amanitaceae).

Not available

S-EPMC4941681 | biostudies-literature

Dietary folate depletion and repletion in A/J and C57BL/6J mice

Defects in homocysteine and folate metabolism are associated with increased risks for neural tube and congenital heart defects, cardiovascular disease and stroke, cancers, and neurodegeneration. In many but not all cases, dietary supplementation with folate significantly reduces the severity and in...

ORGANISM(S): Mus musculus

2008-08-27 | E-GEOD-9242 | biostudies-arrayexpress

Jatropha tanjorensis

Jatropha tanjorensis is a natural interspecific hybrid between J. curcas and J. gossypifolia.

PRJNA32643 | ENA

Allelic dilution series series of C57BL6/J:CAST/EiJ RNA using Smart-seq3

Technical control for allelic detection using Smart-seq3. Liver RNA from pure C57BL6/J and CAST/EiJ strains was combined at varying ratios (0:1, 1:7, 1:3, 3:5, 1:1, 5:3, 3:1, 7:1, 1:0) for a total of 200 pg RNA per sample.

ORGANISM(S): Mus musculus

2022-02-14 | E-MTAB-10709 | biostudies-arrayexpress

Discovery of J chain in African lungfish (Protopterus dolloi, Sarcopterygii) using high throughput transcriptome sequencing: implications in mucosal immunity.

Not available

S-EPMC3743840 | biostudies-literature

CSL ChIP-seq

The expression of a large proportion of the fission yeast genome changes periodically with the cell cycle. Several key transcription factors have been identified that regulate these oscillating and interdependent waves of gene expression. However, for a significant number of cell cycle-regulated gen...

ORGANISM(S): Schizosaccharomyces pombe

2015-09-18 | E-MTAB-2725 | biostudies-arrayexpress

Yeast J-protein Sis1 prevents prion toxicity by moderating depletion of prion protein.

Not available

S-EPMC8633096 | biostudies-literature

Molecular tracers of radiative feedback in Orion (OMC-1) Widespread CH+ (J = 1-0), CO (10-9), HCN (6-5), and HCO+ (6-5) emission.

Not available

S-EPMC6390943 | biostudies-literature

Antegrade anterior column screw placement in the lateral decubitus position utilizing an axial view: a technical trick.

Not available

S-EPMC7735812 | biostudies-literature

Human Treponema pallidum 11q/j isolate belongs to subsp. endemicum but contains two loci with a sequence in TP0548 and TP0488 similar to subsp. pertenue and subsp. pallidum, respectively.