Plant Nick N - OmicsDI

Show results for

Transcriptomics (32)
Unknown (21)
Genomics (11)
Metabolomics (3)
Models (1)

Organisms

Homo sapiens (22)
Arabidopsis thaliana (7)
Drosophila melanogaster (4)
Solanum lycopersicum (2)
Arabidopsis halleri (1)
Cucumis melo (1)
Campylobacter jejuni (1)
Triticum aestivum (1)
Gallus gallus (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Rattus norvegicus (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (42)
MetaboLights (3)
BioModels (1)
EGA (1)

Disease

Small cell lung carcinoma (1)

Technology Type

Mass spectrometry assay (2)
Mass spectrometry (1)

Instrument Platform

Ultrospec 3000 (1)
Affymetrix Gene Atlas System (1)
BD GasPak 150 Jar (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
Liquid Chromatography MS - - - Q Exactive (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
TripleTOF 5600 (AB Sciex) (1)

Publication Date

2010 (7)
2008 (5)
2017 (4)
2013 (4)
2012 (4)
2026 (3)
2011 (3)
2024 (2)
2022 (2)
2015 (2)
2014 (2)
2007 (2)
2020 (1)
2019 (1)
2016 (1)
2009 (1)
2006 (1)
2005 (1)

UNIPROT ID/AC

O75469 (1)
P02768 (1)
P04150 (1)
P08185 (1)
P08684 (1)
P17735 (1)

ENSEMBL ID

ENSG00000113580 (1)
ENSG00000144852 (1)
ENSG00000160868 (1)
ENSG00000198650 (1)
ENST00000336411 (1)
ENST00000337940 (1)
ENST00000343796 (1)
ENST00000355962 (1)

CHEBI ID

CHEBI:16541 (1)
CHEBI:16962 (1)
CHEBI:17650 (1)
CHEBI:33699 (1)
CHEBI:41879 (1)
CHEBI:131494 (1)
CHEBI:131497 (1)
CHEBI:131498 (1)
CHEBI:131499 (1)
CHEBI:131503 (1)
CHEBI:131505 (1)
CHEBI:131506 (1)
CHEBI:15346 (1)
CHEBI:15351 (1)
CHEBI:15380 (1)
CHEBI:15422 (1)
CHEBI:15428 (1)
CHEBI:15467 (1)
CHEBI:15517 (1)
CHEBI:15531 (1)
CHEBI:15603 (1)
CHEBI:15652 (1)
CHEBI:15664 (1)
CHEBI:15676 (1)
CHEBI:15713 (1)
CHEBI:15721 (1)
CHEBI:15741 (1)
CHEBI:15751 (1)
CHEBI:15756 (1)
CHEBI:15843 (1)

Metabolite Name

(+)-Abscisic acid (1)
(+)-trans-C75 (1)
(-)-11-Nor-9-carboxy-.DELTA.9-THC (1)
(-)-Catechin (1)
(-)-Jasmonic acid (1)
(-)-Syringaresinol-4-O-.beta.-D-glucopyranoside (1)
(.+/-.)-Vestitol (1)
(.+/-.)-Willardiine (1)
(.+/-.)20-HDoHE (1)
(1-Acetyloxy-3-hydroxy-6,8a-dimethyl-7-oxo-3-propan-2-yl-2,3a,4,8-tetrahydro-1H-azulen-4-yl) 4-hydroxybenzoate (1)
(19R)-9-acetyl-19-hydroxy-10,14-dimethyl-20-oxopentacyclo[11.8.0.0<2,10>.0<4,9 >.0<14,19>]henicos-17-yl acetate (1)
(2-Butoxyethoxy)acetic acid (1)
(2-Formyl-4-methoxyphenoxy)acetic acid (1)
(2E)-4-Hydroxynon-2-enoic acid (1)
(2E)-5-(4-(Carboxymethyl)-4-(methoxycarbonyl)-3-methyl-6-methylidene-2-oxooctahydro-1-benzofuran-5-yl)-3-methylpent-2-enoic acid (1)
(2E)-5-Hydroxyundec-2-enoic acid (1)
(2E)-6-Hydroxy-2,6-dimethylocta-2,7-dien-1-yl 6-O-.alpha.-L-arabinopyranosyl-.beta.-D-glucopyranoside (1)
(2E,4E)-12-Hydroxy-3,5,7-trimethyl-13-methyloltetradeca-2,4-dienedioic acid (1)
(2E,4E)-5-(3,8-Dihydroxy-1,5-dimethyl-7-oxo-6-oxabicyclo[3.2.1]octan-8-yl)-3-methylpenta-2,4-dienoic acid (1)
(2E,4E)-5-(6-((.beta.-D-Glucopyranosyloxy)methyl)-1-hydroxy-2,6-dimethyl-4-oxocyclohex-2-en-1-yl)-3-methylpenta-2,4-dienoic acid (1)
(2E,4E)-7,12-Dihydroxy-3,5,7-trimethyl-13-methyloltetradeca-2,4-dienedioic acid (1)
(2R)-2',5,8-Trihydroxy-7-methoxyflavanone (1)
(2R)-2-(.beta.-D-Glucopyranosyloxy)-2-phenylacetamide (1)
(2R,3S)-3-Isopropylmalate (1)
(2S,3S,4S,5R,6R)-6-[(2R,3R,4S,5S,6S)-2-[[(3S,6aR,6bS,8aS,12aR,14bS)-11-carboxy-4,4,6a,6b,8a,11,14b-heptamethyl-14-oxo-2,3,4a,5,6,7,8,9,10,12,12a,14a-dodecahydro-1H-picen-3-yl]oxy]-6-carboxy-4,5-dihydroxyoxan-3-yl]oxy-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
(2S,3aS,7aS)-Octahydro-1H-indole-2-carboxylic acid (1)
(2Z)-2-(.beta.-D-Glucopyranosyloxy)-3-phenyl-2-propenoic acid (1)
(3-(Hexopyranosyloxy)-2-((2Z)-pent-2-en-1-yl)cyclopentyl)acetic acid (1)
(3-Ethenyl-2-(.beta.-D-glucopyranosyloxy)-5-(methoxycarbonyl)-3,4-dihydro-2H-pyran-4-yl)acetic acid (1)
(3.beta.,5.Xi.,9.Xi.,18.Xi.)-3,19-Dihydroxyurs-12-ene-24,28-dioic acid (1)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (17)
ChIP-seq (8)
ChIP-chip by tiling array (5)
Unknown experiment type (4)
RNA-seq of coding RNA (3)
DNA-seq (2)
Plant - High-throughput sequencing (1)
ChIP-chip by array (1)
Comparative genomic hybridization by array (1)

Release Date

2010 (9)
2015 (7)
2013 (5)
2008 (5)
2017 (4)
2012 (4)
2024 (3)
2022 (3)
2011 (3)
2025 (3)
2021 (3)
2020 (2)
2014 (2)
2007 (2)
2023 (2)
2026 (1)
2019 (1)
2016 (1)
2009 (1)
2006 (1)
2005 (1)

Previous page
1 / 7
You're on page 1
page 2
page 3
page 4
page 5
page 6
page 7
Next page

Sort by:

Relevance

Page size

Evaluation of anatomical and physiological traits of Solanum pennellii Cor. associated with plant yield in tomato plants under water-limited conditions.

Not available

S-EPMC7524713 | biostudies-literature

Multiomics of tomato glandular trichomes reveals distinct features of central carbon metabolism supporting high productivity of specialized metabolites

Glandular trichomes are metabolic cell factories with the capacity to produce large quantities of secondary metabolites. Little is known about the connection between central carbon metabolism and metabolic productivity for secondary metabolites in glandular trichomes. To address this gap in our know...

2017-04-25 | MTBLS297 | MetaboLights

Successful full-length genomic cloning and characterization of site-specific nick structures of Phytophthora endornaviruses 2 and 3 in yeast, Saccharomyces cerevisiae.

Not available

S-EPMC10523305 | biostudies-literature

Accelerated Long-Fragment Circular PCR for Genetic Manipulation of Plant Viruses in Unveiling Functional Genomics.

Not available

S-EPMC10747169 | biostudies-literature

Kolodkin2013 - Nuclear receptor-mediated cortisol signalling network

Kolodkin2013 - Nuclear receptor-mediated cortisol signalling network This model is described in the article: Optimization of stress response through the nuclear receptor-mediated cortisol signalling network. Kolodkin A, Sahin N, Phillips A, Hood SR, Bruggeman FJ, Westerhoff ...

2024-09-02 | BIOMD0000000576 | BioModels

Rice ragged stunt virus-induced apoptosis affects virus transmission from its insect vector, the brown planthopper to the rice plant.

Not available

S-EPMC4466780 | biostudies-literature

Multiomics of tomato glandular trichomes reveals distinct features of central carbon metabolism supporting high productivity of specialized metabolites

Glandular trichomes (GT) are specialized cell factories that have the capacity to produce large amounts of metabolites which can amount to over 10% of the leaf dry weight. The specific expression of secondary metabolite pathways in glandular trichomes has facilitated their elucidation. However, litt...

ORGANISM(S): Solanum lycopersicum

2017-05-31 | E-MTAB-4482 | biostudies-arrayexpress

A kinesin with calponin-homology domain is involved in premitotic nuclear migration.

Not available

S-EPMC2905203 | biostudies-literature

A plant-based medicinal food inhibits the growth of human gastric carcinoma by reversing epithelial-mesenchymal transition via the canonical Wnt/β-catenin signaling pathway.

Not available

S-EPMC8106854 | biostudies-literature

Effects of arbuscular mycorrhiza on transcriptome of fruits from a commercially used tomato cultivar grown in hydroponics

Industrialized tomato production faced a decrease in flavours and nutritional values due to conventional breeding and growth conditions. We addressed the question, whether commercially used tomato cultivars grown in a hydroponic system can be mycorrhizal leading to improved fruit quality. Comparing ...

ORGANISM(S): Solanum lycopersicum

2020-11-06 | E-MTAB-9419 | biostudies-arrayexpress

Previous page
1 / 7
You're on page 1
page 2
page 3
page 4
page 5
page 6
page 7
Next page

Sort by:

Relevance

Page size

68 Results

Show results for

Organisms

Repository

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

IsPrivate

Modelling Approach

Study type

Release Date

OmicsDI is part of the ELIXIR infrastructure

Tweets