Plant growth-promoting rhizobacteria

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Unknown (772)
Genomics (273)
Transcriptomics (26)
Proteomics (11)
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Organisms

Arabidopsis thaliana (11)
Alphavirus (9)
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Bacteria (9)
Betaherpesvirinae (9)
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Eukaryota (9)
Hepatitis B virus (9)
Human alphaherpesvirus 1 (9)
Human betaherpesvirus 5 (9)
Influenza A virus (9)
Influenza C virus (9)
Japanese encephalitis virus group (9)
Kamptonema sp. (9)
Listeria monocytogenes (9)
Mammarenavirus (9)
Miscanthus x giganteus (9)
Bacillus amyloliquefaciens (4)
Oryza sativa (3)
Bacillus subtilis (2)
Oryza sativa Japonica Group (2)
Triticum aestivum (1)
Bacillus atrophaeus (1)
Coriandrum sativum (1)
Musa acuminata (1)
Pseudomonas fluorescens (1)

Organisms

Bacillus velezensis (10)
soil metagenome (10)
Arabidopsis thaliana (9)
rhizosphere metagenome (4)
Pseudomonas protegens (3)
Bacillus velezensis UCMB5036 (2)
Acidisoma sp. (2)
Coriandrum sativum (2)
Bacillus halotolerans (2)
Bacillus subtilis (2)
Serratia marcescens (2)
Bacillus atrophaeus (2)
Oryza sativa (2)
Pseudomonas sp. R62 (1)
Pseudomonas putida BIRD-1 (1)
Pseudomonas sp. R81 (1)
Paenibacillus sp. OT2-17 (1)
Bacillus sp. 916 (1)
Bacillus sp. OA1 (1)
Bacillus velezensis YAU B9601-Y2 (1)
Burkholderia sp. Nafp2/4-1b (1)
Pseudomonas sp. GBPI_506 (1)
Pseudomonas sp. PGPR N4 (1)
Pseudomonas sp. FeS53a (1)
Rhizobium sp. UR51a (1)
Chryseobacterium sp. IHB B 17019 (1)
Azospirillum sp. TSH100 (1)
Azospirillum sp. TSA2s (1)
Streptomyces sp. CLV100 (1)
Sphingobium sp. 3R8 (1)

Repository

ENA (273)
geo (14)
biostudies-arrayexpress (12)
pride (9)
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iProX (1)
MassIVE (1)
MetaboLights (1)

Tissue

Cell culture (3)
Plant cell (2)
Root (2)
Bacterial protein (1)
Endospore (1)
Leaf (1)

Disease

Disease free (2)

Technology Type

Mass Spectrometry (9)
Data-dependent acquisition (4)
Shotgun proteomics (4)
Mass spectrometry assay (1)
Bottom-up proteomics (1)

Instrument Platform

Q Exactive (2)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)

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2014 (6)
2023 (5)
2017 (5)
2026 (4)
2022 (3)
2015 (2)
2013 (2)
2012 (2)
2024 (2)
2021 (2)
2025 (2)
2009 (1)
2006 (1)
2019 (1)
2016 (1)

Metabolite Name

3-Amino-3-(4-hydroxyphenyl)propanoic Acid (1)
Muricatetrocin C (1)
N-Caffeoyltryptophan (1)
(Z)-2-Decene-4,6,8-triyn-1-ol (1)
Pentadecanol (1)
Gamma-Dodecalactone (1)
2-Methyl-5-(2-propenyl)pyrazine (1)
2-Methyl-3-phenyl-2-propenal (1)
Osmundalin (1)
(3S,6E)-Nerolidol (1)
2,6,6-Trimethyl-2-cyclohexene-1,4-dione (1)
P-Cresol (1)
12-Methyl-13-tridecanolide (1)
(Z)-15-Oxo-11-eicosenoic acid (1)
Trans-Jasmone (1)
Germacrene D (1)
Abietic Acid (1)
16(r)-hete (1)
(Z)-11-Eicosen-1-ol (1)
Thalictroidine (1)
7-Acetyllycopsamine (1)
Quercetin-4'-glucuronide (1)
Chitotriose (1)
(+/-)-1-(4-Methylphenyl)ethanol (1)
16a-Hydroxyestrone (1)
Neryl butyrate (1)
15(s)-hpete (1)
1,17-Heptadecanediol (1)
Lucidenic acid H (1)
Alpha-Eudesmol (1)

First Public Date

2026 (49)
2025 (36)
2024 (36)
2020 (29)
2021 (24)
2023 (20)
2019 (15)
2022 (14)
2017 (14)
2013 (12)
2018 (7)
2014 (7)
2016 (5)
2015 (5)

Classification

bacteria (20)

Study type

Transcription profiling by array (8)
RNA-seq of coding RNA (4)

Release Date

2022 (126)
2023 (96)
2025 (92)
2020 (92)
2021 (87)
2024 (80)
2019 (52)
2018 (35)
2016 (31)
2017 (24)
2015 (21)
2014 (17)
2026 (11)
2013 (5)
2012 (5)
2009 (3)
2011 (2)
2008 (2)
2006 (1)
2005 (1)

Lab affiliation

lanzhou university (2)
Daegu Catholic University School of Medicine (1)
Department of Plant Science, McGill University, Montreal (1)
Département de Chimie, Université de Sherbrooke (QC), Canada (1)
MSAP USR 3290 CNRS Cité scientifique Villeneuve d'Ascq France (1)
Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University (1)
VIB-UGent Center for Plant Systems Biology, Belgium (1)
VIB-UGent Center for Plants Systems Biology (PSB) (1)

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Plant root transcriptome profiling of Azospirillum-rice cooperation

Cooperation involving Plant Growth-Promoting Rhizobacteria results in improvements of plant growth and health. While pathogenic and symbiotic interactions are known to induce transcriptional changes for genes related to plant defense and development, little is known about the impact of phytostimulat...

ORGANISM(S): Oryza sativa Japonica Group

2014-12-22 | E-GEOD-59137 | biostudies-arrayexpress

Sequencing and analysis of three plant growth promoting rhizobacteria

Sequencing and analysis of three plant growth promoting rhizobacteria isolated from the rhizosphere of plantation crops coconut, cocoa and arecanut

PRJEB5991 | ENA

Soybean leaf proteomic profile influenced by rhizobacteria under optimal and salt stress conditions

Soil salinity is a major abiotic stressor inhibiting plant growth and development by affecting a range of physiological processes. Plant growth promoting rhizobacteria (PGPR) are considered a sustainable option for alleviation of stress and enhancement of plant growth, yet their mode of action is co...

ORGANISM(S): Glycine max

2022-05-20 | PXD025596 | Pride

Transcription profiling of Arabidopsis in response to plant growth promoting rhizobacteria

Arabidopsis thaliana transcriptome analysis in response to plant growth promoting rhizobacteria (PGPR)
Experiment 1 : Changes in gene expression profile triggered during root architecture response to Phyllobacterium.
Biological question : Which genes are up- or down-regulated in Arabidopsis ...

ORGANISM(S): Arabidopsis thaliana

2006-02-01 | E-MEXP-386 | biostudies-arrayexpress

Plant-growth promoting effect of newly isolated rhizobacteria varies between two Arabidopsis ecotypes.

Not available

S-EPMC3442855 | biostudies-literature

Transcriptome profiling of banana in response to growth-promoting rhizobacteria

We report the banana transcriptome profile in response to two distinct growth-promoting rhizobacteria, Bacillus amyloliquefaciens and Pseudomonas fluorescens. The goal of our study is to identify plant genes differentially regulated by rhizobacteria-plant interaction along time. At the same time, we...

ORGANISM(S): Musa acuminata

2016-04-21 | GSE80495 | GEO

Characterization of Selected Plant Growth-Promoting Rhizobacteria and Their Non-Host Growth Promotion Effects.

Not available

S-EPMC8552778 | biostudies-literature

The Microphenotron: a novel method for screening plant growth-promoting rhizobacteria.

Not available

S-EPMC9109696 | biostudies-literature

arcole / pgpr-Nitrogenous nutrition efficiency of canola in spring : identification of targets for plant breeding

pc_arcole - arcole / pgpr - What are the genes implicated in the efficiency of nitrogenous nutrition when A.thaliana is inoculated with a PGPR (Plant Growth Promoting Rhizobacteria)? - A.thaliana seeds germinated and grew during ten days until they were transfered in 6 different media: 0,5 mM nitrat...

ORGANISM(S): Arabidopsis thaliana

2012-05-31 | E-GEOD-36730 | biostudies-arrayexpress

Plant growth-promoting rhizobacteria (PGPR) improve the growth and quality of several crops.

Not available

S-EPMC11137509 | biostudies-literature

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