Plant pest - OmicsDI

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Unknown (5930)
Genomics (354)
Transcriptomics (112)
Proteomics (51)
Metabolomics (11)
Models (1)

Organisms

Tetranychus urticae (7)
Oryza sativa (6)
Arabidopsis thaliana (6)
Malus domestica (4)
Zea mays (4)
Candidatus Phytoplasma asteris (3)
Spodoptera frugiperda (3)
Corynebacterium glutamicum (3)
Bos taurus (3)
Rattus norvegicus (3)
Locusta migratoria (3)
Helicoverpa armigera (3)
Vitis vinifera (3)
Cucumis sativus (2)
Solanum tuberosum (2)
Mus musculus (2)
Schistocerca gregaria (2)
Eucalyptus grandis (2)
Euphorbia esula (2)
Bemisia tabaci (2)
Gossypium hirsutum (2)
Diabrotica virgifera virgifera (1)
Plutella xylostella (1)
Boehmeria nivea (1)
Cucumis sativus var. sativus (1)
Coffea (1)
Picea engelmannii x Picea glauca (1)
Myzus persicae (1)
Heterodera avenae (1)
Vanessa cardui (1)

Organisms

Solanum lycopersicum (8)
Oryza sativa (8)
Tetranychus urticae (5)
Arabidopsis thaliana (4)
Lygus lineolaris (3)
Mayetiola destructor (3)
Ambrosia x helenae (3)
Helicoverpa armigera (3)
Bemisia tabaci (3)
Bactrocera dorsalis (3)
Cucumis melo (3)
Bacillus thuringiensis (3)
insect metagenome (3)
Glycine max (3)
Chlorops oryzae (2)
Halyomorpha halys (2)
Hemadas nubilipennis (2)
Helicoverpa assulta (2)
Barbarea vulgaris (2)
Chilo suppressalis (2)
Frankliniella intonsa (2)
Hordeum vulgare (2)
insect gut metagenome (2)
Zea mays (2)
Vitis vinifera (2)
Bacillus velezensis (2)
Gossypium hirsutum (2)
soil metagenome (2)
Nicotiana benthamiana (2)
Inopus flavus (1)

Repository

ENA (351)
biostudies-arrayexpress (76)
pride (40)
geo (39)
MetaboLights (11)
iProX (8)
MassIVE (2)
BioModels (1)
jPOST (1)

Tissue

Whole body (15)
Leaf (6)
Mycelium (3)
Plant cell (3)
Saliva (3)
Accessory sex gland (1)
Bursa copulatrix (1)
Cell culture (1)
Conidium (1)
Rosette (1)
Salivary gland (1)
Skin (1)

Technology Type

Mass Spectrometry (40)
Shotgun proteomics (27)
Mass spectrometry (8)
Data-dependent acquisition (6)
Bottom-up proteomics (5)
Mass spectrometry assay (3)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-independent acquisition (2)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)
Mass spectrometry imaging (1)
SWATH MS (1)

Instrument Platform

Illumina HiSeq 2000 (5)
Liquid Chromatography MS - positive - reverse phase (5)
Liquid Chromatography MS - negative - reverse phase (4)
Gas Chromatography MS - positive (2)
Agilent G2505B scanner (1)
Illumina Genome Analyzer II (1)
NA (1)
BGISEQ-500 (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
4000 QTRAP (1)
Orbitrap Exploris 480 (1)
6550 Q-TOF LC-MS Agilent (1)
6540 Q-TOF LC/MS (Agilent) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)

Publication Date

2011 (16)
2022 (15)
2025 (13)
2014 (13)
2023 (13)
2020 (13)
2016 (12)
2012 (12)
2015 (10)
2021 (8)
2026 (8)
2010 (7)
2024 (7)
2018 (6)
2013 (6)
2019 (5)
2009 (4)
2007 (2)
2017 (2)

CHEBI ID

CHEBI:30769 (3)
CHEBI:86904 (2)
CHEBI:25106 (2)
CHEBI:137496 (2)
CHEBI:23849 (2)
CHEBI:31345 (2)
CHEBI:36615 (2)
CHEBI:28527 (2)
CHEBI:50202 (2)
CHEBI:16547 (2)
CHEBI:74559 (2)
CHEBI:137259 (2)
CHEBI:17716 (2)
CHEBI:47925 (2)
CHEBI:15864 (2)
CHEBI:36281 (2)
CHEBI:30816 (2)
CHEBI:28635 (2)
CHEBI:35584 (2)
CHEBI:21563 (2)
CHEBI:15640 (2)
CHEBI:36313 (2)
CHEBI:16708 (2)
CHEBI:17748 (2)
CHEBI:16119 (2)
CHEBI:15741 (2)
CHEBI:6650 (2)
CHEBI:17276 (2)
CHEBI:32374 (2)
CHEBI:27248 (2)

Metabolite Name

Succinic acid (4)
Shikimic acid (4)
Fumaric acid (4)
L-Tryptophan (4)
Gluconic acid (3)
Caffeic acid (3)
Citric acid (3)
Malic acid (3)
Palmitic acid (3)
Azelaic acid (3)
Adenine (3)
Uric acid (3)
Thymidine (3)
Uridine (3)
Diterpenoids (2)
Macrolides and analogues (2)
Methyl 4-hydroxycinnamate (2)
5-O-Feruloylquinic acid (2)
5,6-Dihydrouracil (2)
Calcium pantothenate (2)
D-Arabinose (2)
Isochlorogenic acid C (2)
Isorhamnetin (2)
Geniposide (2)
Chlorogenic acid (2)
L-Saccharopine (2)
Guanosine 3',5'-cyclic monophosphate (2)
Kukoamine A (2)
D-Galactose (2)
Lactic acid (2)

IsPrivate

False (1)

First Public Date

2025 (57)
2024 (46)
2026 (44)
2023 (37)
2021 (33)
2013 (27)
2022 (21)
2014 (18)
2018 (15)
2019 (14)
2020 (11)
2015 (11)
2017 (9)
2016 (8)

Classification

fungi (1)
bacteria (1)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (43)
RNA-seq of coding RNA (22)
RNA-seq of non coding RNA (3)
Animal - High-throughput sequencing (2)
Unknown experiment type (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
Comparative genomic hybridization by array (1)
ATAC-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (710)
2025 (697)
2023 (675)
2021 (603)
2024 (556)
2020 (524)
2019 (479)
2017 (315)
2018 (307)
2016 (293)
2015 (221)
2014 (170)
2013 (124)
2012 (88)
2026 (79)
2011 (63)
2010 (39)
2008 (21)
2009 (14)
2007 (9)
2006 (5)
2005 (5)
2001 (3)
2004 (2)
2000 (2)
1997 (2)

Lab affiliation

Key Lab of Integrated Crop Pest Management of Shandong, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, China (8)
College of Plant Protection, Northwest A&F University (2)
Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu, China;Key Laboratory of Soybean Disease and Pest Control (Ministry of Agriculture and Rural Affairs) (2)
State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China (2)
2The Key Laboratory of Integrated Crop Pest Management of Shandong Province, College of Agronomy and Plant Protection, Qingdao Agricultural University, Qingdao 266109, China (1)
Anhui Province Key Laboratory of Crop Integrated Pest Management, School of Plant Protection, Anhui Agricultural University, Hefei 230036, China. (1)
BioBix, Lab for Bioinformatics and Computational Genomics, Ghent University, Belgium (1)
Biological and Environmental Proteomics, Institute of Biomedical Research of Barcelona, Spanish National Research Council (IIBB-CSIC/IDIBAPS), Rosellón 161, E-08036 Barcelona, Spain. (1)
CAS Center for Excellence in Molecular Plant Sciences (1)
College of plant protection, Southwest University, China (1)
Department of Agricultural, Food And Forest Sciences (SAAF) University of Palermo Viale delle Scienze, 90128 Palermo, Italy (1)
Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu, China;Key Laboratory of Soybean Disease and Pest Control (Ministry of Agriculture and Rural Affairs), (1)
Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, B-9000 Ghent, Belgium (1)
Department of Zoology, Savitribai Phule University, Pune, Maharashtra, India (1)
Dr. A. Manivannan,Senior Scientist, ICAR- Central Institute for Cotton Research, Regional Station, Coimbatore-641003, Tamil Nadu, India (1)
Group Leader Dept. CRop Genetics John Innes Centre JIC Norwich Research Park Norwich, UK (1)
Head of the CRG/UPF Proteomics Unit (1)
ICAR-National Institute for Plant Biotechnology, Pusa Campus, New Delhi, India -110012 (1)
Institute BIOTECMED / Department of Genetics, University of Valencia, Burjassot, Spain (1)
Institute for Sustainable Plant Protection of the National Research Council of Italy, IPSP - CNR (1)
Key Lab of Integrated Crop Disease and Pest Management of Shandong Province; College of Plant Health Medicine, Qingdao Agricultural University (1)
Key Laboratory of Entomology and Pest Control Engineering, College of Plant Protection, Southwest University, Chongqing 400716, China (1)
Pest Control Laboratory, Institute of Biotechnology and Biomedicine (BIOTECMED), Universitat de València, 46100-Burjassot, Valencia, Spain (1)
Proteomics and Metabolomics Facility, University of Nebraska - Lincoln, USA (1)
State Key Laboratory for Quality and Safety of Agro-products, Key Laboratory of Biotechnology in Plant Protection of MOA of China and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo, 315211, China (1)
State Key Laboratory of Crop Stress Biology for Arid Areas, Key Laboratory of Plant Protection Resources and Pest Management of Ministry of Education, College of Plant Protection, Northwest A&F University, Yangling 712100, Shaanxi, China (1)
State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection,Fujian Agriculture and Forestry University, Fuzhou 350002, China (1)
The Key Laboratory of Integrated Crop Pest Management of Shandong Province, College of Agronomy and Plant Protection, Qingdao Agricultural University, Qingdao 266109, China. (1)
USDA-ARS, Boyce Thompson Institute, Cornell University (1)
Universitat de València, Institute BIOTECMED Department ofGenetics, Unidad Mixta Gestión Biotecnológica de Plagas UV-IVIA, Burjassot, Valencia, Spain (1)

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Plant elicitor peptide signalling confers rice resistance to piercing-sucking insect herbivores and pathogens

Rice is a staple food crop worldwide, and its production is severely threatened by phloem-feeding insect herbivores, particularly the brown planthopper (BPH, Nilaparvata lugens), and destructive pathogens. Despite the identification of many BPH resistance genes, the molecular basis of rice resistanc...

2022-02-23 | MTBLS3518 | MetaboLights

The Streptomyces-derived nucleoside Guvermectin simultaneously promotes plant growth and immunity

This study investigates the dual role of the Streptomyces-derived nucleoside Guvermectin (GV) in promoting plant growth and enhancing disease resistance. Multiomics analysis revealed that GV reprograms phenylalanine metabolism, leading to the accumulation of antimicrobial flavonoids. A key UDP-gl...

2026-01-31 | MTBLS13810 | MetaboLights

SAFARIS: a spatial analytic framework for pest forecast systems.

Not available

S-EPMC10926409 | biostudies-literature

New insight into a host-pathogen interaction unveiled by transcriptomics response of the global insect pest Plutella xylostella to a fungal pathogen

A genomic insight into how an insect pest responds to the infection of a fungal insect pathogen, such as Beauveria bassiana, is critical for alternative strategy of insect pest contol based on fungal insecticides but has not been well probed. Here we constructed three pairs of digital expression lib...

ORGANISM(S): Plutella xylostella

2016-04-06 | E-GEOD-72383 | biostudies-arrayexpress

phytoplasma in plants vs. phytoplasma in insects (co-hybridizations)

Transcriptional profiling of phytoplasma grown in plant (Chrysanthemum coronarium) and grown in insect (Macrosteles striifrons). Two-condition experiment, phytoplasma-infected plant and phytoplasma-infected insect. Biological replicates: 6 phytoplasma-infected plants and 6 phytoplasma-infected insec...

ORGANISM(S): Candidatus Phytoplasma asteris

2012-01-16 | E-GEOD-30302 | biostudies-arrayexpress

Expression data from plant tissues during incompatible interaction between the rice host and its major pest, the Asian rice gall midge

During an incompatible or compatible interaction between rice (Oryza sativa) and the Asian rice gall midge (Orseolia oryzae), a lot of genetic reprogamming occurs in the plant host We used microarray to know the changes occuring in the resistant host (indica rice variety RP2068-18-3-5) when challeng...

ORGANISM(S): Oryza sativa

2016-02-23 | E-GEOD-70526 | biostudies-arrayexpress

Indirect plant defense may provide economically important pest suppression in sorghum.

Not available

S-EPMC12539392 | biostudies-literature

Promise for plant pest control: root-associated pseudomonads with insecticidal activities.

Not available

S-EPMC3728486 | biostudies-literature

Transcriptional changes of phytoplasma under host switching between plant and insect

This SuperSeries is composed of the following subset Series: GSE29274: phytoplasma in plants vs. phytoplasma in insects (single hyb expts) GSE30302: phytoplasma in plants vs. phytoplasma in insects (co-hybridizations) Refer to individual Series

ORGANISM(S): Candidatus Phytoplasma asteris

2012-01-16 | E-GEOD-30804 | biostudies-arrayexpress

Plant-Based Natural Product Chemistry for Integrated Pest Management of Drosophila suzukii.

Not available

S-EPMC6661260 | biostudies-literature

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6459 Results

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