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Unknown
(1793)
Genomics
(144)
Transcriptomics
(56)
Proteomics
(23)
Metabolomics
(19)
Models
(3)
Other
(1)
Organisms
Arabidopsis thaliana
(24)
Homo sapiens
(8)
Streptomyces coelicolor
(4)
Tetranychus urticae
(3)
Vitis vinifera
(3)
Drosophila mettleri
(2)
Triticum aestivum
(2)
Lactiplantibacillus plantarum
(1)
Burkholderia glumae BGR1
(1)
Fusarium oxysporum
(1)
Pyrus communis
(1)
Euphorbia esula
(1)
Pimephales promelas
(1)
Brassica napus
(1)
Zea mays
(1)
Pseudomonas putida
(1)
Solanum tuberosum
(1)
Hordeum vulgare subsp. vulgare
(1)
Escherichia coli
(1)
Danio rerio
(1)
Hyla orientalis
(1)
Lactiplantibacillus plantarum WCFS1
(1)
Exiguobacterium sp. Leaf187
(1)
Rhizobium sp. Leaf155
(1)
Plantibacter sp. Leaf1
(1)
Flavobacterium sp. Root935
(1)
Arthrobacter sp. Soil763
(1)
Acinetobacter sp. Leaf130
(1)
Chryseobacterium sp. Leaf404
(1)
Burkholderia sp. Leaf177
(1)
Organisms
Arabidopsis thaliana
(6)
rhizosphere metagenome
(4)
Zea mays
(2)
Zea mays subsp. mays
(2)
Vitis vinifera
(2)
soil metagenome
(2)
Hyla orientalis
(1)
Enterobacter cloacae subsp. cloacae GS1
(1)
Candidatus Paraburkholderia kirkii UZHbot1
(1)
Drosophila mettleri
(1)
uncultured soil microorganism
(1)
Lactiplantibacillus plantarum WCFS1
(1)
Methylobacterium fujisawaense
(1)
Pseudomonas alloputida
(1)
Erythranthe lewisii
(1)
Delia radicum
(1)
Zymoseptoria tritici
(1)
Bemisia tabaci
(1)
Eucalyptus grandis
(1)
Arabidopsis halleri subsp. gemmifera
(1)
Medicago truncatula
(1)
Phaseolus vulgaris
(1)
bovine metagenome
(1)
root associated fungus metagenome
(1)
Sclerotinia sclerotiorum
(1)
Aeromonas dhakensis
(1)
Escherichia coli
(1)
marine metagenome
(1)
Gossypium hirsutum
(1)
root metagenome
(1)
Repository
ENA
(139)
biostudies-arrayexpress
(42)
MetaboLights
(17)
geo
(15)
pride
(11)
MassIVE
(6)
EGA
(5)
iProX
(5)
BioModels
(3)
GNPS
(2)
PAXDB
(1)
Tissue
Plant cell
(4)
Root
(2)
Leaf
(2)
Whole body
(1)
Disease
Normal
(1)
Technology Type
Mass spectrometry
(14)
Mass Spectrometry
(11)
Data-dependent acquisition
(4)
Mass spectrometry assay
(3)
Gel-based experiment
(2)
Affinity purification coupled with mass spectrometry proteomics
(2)
Shotgun proteomics
(2)
Metaproteomics
(1)
Data-independent acquisition
(1)
Top-down proteomics
(1)
Bottom-up proteomics
(1)
Instrument Platform
Liquid Chromatography MS - positive - reverse phase
(5)
Liquid Chromatography MS - negative - reverse phase
(5)
GC-MS
(3)
Illumina NovaSeq 6000
(2)
Q Exactive
(2)
Impact II
(2)
MS Imaging -
(2)
Liquid Chromatography MS - negative - reverse-phase
(2)
GenePix Personal 4100A [Axon Instruments]
(1)
Illumina HiSeq 2500
(1)
Illumina HiSeq 2000
(1)
Illumina HiSeq 3000
(1)
LTQ Orbitrap|1000449
(1)
Ultimate 3000 (Thermo Fischer Scientific - HPLC)
(1)
TSQ Altis
(1)
6546 Q-TOF LC/MS (Agilent instrument model)
(1)
Q Exactive HF
(1)
Liquid Chromatography MS - Negative (LC-MS (Negative))
(1)
Liquid Chromatography Tandem MS (LC-MS/MS)
(1)
Liquid Chromatography MS - Positive (LC-MS (Positive))
(1)
Gas Chromatography MS - positive
(1)
MicrOTOF-Q
(1)
Liquid Chromatography MS - alternating - hilic
(1)
Liquid Chromatography MS - alternating - reverse phase
(1)
Liquid Chromatography MS - negative - HILIC
(1)
Liquid Chromatography MS - positive - HILIC
(1)
Liquid Chromatography MS - positive - reverse-phase
(1)
Liquid Chromatography MS - positive - hilic
(1)
Publication Date
2026
(10)
2013
(9)
2024
(8)
2014
(8)
2010
(8)
2022
(7)
2015
(6)
2011
(6)
2008
(5)
2025
(5)
2021
(4)
2020
(4)
2023
(4)
2016
(3)
2019
(3)
2018
(2)
2012
(2)
2007
(2)
2005
(1)
2017
(1)
UNIPROT ID/AC
9606.ENSP00000482816
(1)
ARL17_HUMAN
(1)
HNF1B_HUMAN
(1)
9606.ENSP00000404247
(1)
CRYA2_HUMAN
(1)
CP3A7_HUMAN
(1)
AN13B_HUMAN
(1)
PSMA8_HUMAN
(1)
PAL4E_HUMAN
(1)
9606.ENSP00000366679
(1)
H7BZ11_HUMAN
(1)
PAL4A_HUMAN
(1)
U3KQV3_HUMAN
(1)
H2A1D_HUMAN
(1)
9606.ENSP00000352119
(1)
PABP3_HUMAN
(1)
M0QYT0_HUMAN
(1)
9606.ENSP00000462355
(1)
9606.ENSP00000348924
(1)
9606.ENSP00000481486
(1)
TRPV5_HUMAN
(1)
H2B1D_HUMAN
(1)
9606.ENSP00000479106
(1)
9606.ENSP00000462667
(1)
9606.ENSP00000355778
(1)
N0E472_HUMAN
(1)
9606.ENSP00000479461
(1)
RMXL3_HUMAN
(1)
UBB_HUMAN
(1)
ATD3C_HUMAN
(1)
CHEBI ID
CHEBI:39244
(4)
CHEBI:17505
(4)
CHEBI:17620
(4)
CHEBI:17203
(4)
CHEBI:18012
(4)
CHEBI:28635
(3)
CHEBI:320061
(3)
CHEBI:18266
(3)
CHEBI:16977
(3)
CHEBI:15586
(3)
CHEBI:340824
(3)
CHEBI:16934
(3)
CHEBI:30852
(3)
CHEBI:27956
(3)
CHEBI:16534
(3)
CHEBI:15824
(3)
CHEBI:5457
(3)
CHEBI:30997
(3)
CHEBI:16958
(3)
CHEBI:16610
(3)
CHEBI:4167
(3)
CHEBI:15963
(3)
CHEBI:16002
(3)
CHEBI:74324
(3)
CHEBI:72688
(3)
CHEBI:17268
(3)
CHEBI:32374
(3)
CHEBI:17115
(3)
CHEBI:30763
(3)
CHEBI:16857
(3)
Metabolite Name
L-proline
(4)
Alpha,beta-trehalose
(3)
2-isopropylmalic acid
(3)
Methyl alpha-D-glucopyranoside
(3)
Ononitol
(3)
L-alanine
(3)
D-(−)-2-methylmalic acid
(3)
Phosphoric acid monomethyl ester
(3)
3-cyano-L-alanine
(3)
Trans-4-coumaric acid
(3)
Galactinol
(3)
L-dehydroascorbic acid
(3)
D-galactonic acid
(3)
Glycerophosphoglycerol
(3)
1,6-anhydro-beta-D-glucose
(3)
Beta-alanine
(3)
D-glucopyranose
(3)
D-ribitol
(3)
D-saccharic acid
(3)
4-hydroxybenzoic acid
(3)
L-threonine
(3)
Ferulic acid
(3)
L-glyceric acid
(3)
Hexatriacontane
(3)
Fumaric acid
(3)
Myo-inositol
(3)
L-glutamic acid
(3)
L-serine
(3)
D-fructose
(3)
D-pinitol
(3)
First Public Date
2024
(23)
2026
(18)
2025
(16)
2020
(13)
2019
(12)
2023
(11)
2021
(10)
2022
(9)
2014
(9)
2018
(5)
2015
(4)
2017
(3)
2016
(3)
2013
(3)
Modelling Approach
Ordinary differential equation model
(3)
Lab affiliation
College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang 110866, PR China
(1)
Norwegian University of Life Sciences, Aas, Norway
(1)
VIB-UGent Center for Plants Systems Biology (PSB)
(1)
North Carolina State University, department of plant and microbial biology
(1)
VIB-UGent Center for Plant Systems Biology, Belgium
(1)
Plant Science Group, School of Molecular Biosciences, College of Medical, Veterinary and Life Sciences, Bower Building, University of Glasgow, University Avenue, G12 8QQ Glasgow, UK
(1)
Department of Microbiology, Institute of Biomedical Sciences, University of São Paulo
(1)
University of missouri
(1)
Donald Danforth Plant Scinece Center
(1)
Biological Mass Spectrometry Lab, Department of Translational Medicine (DiMeT), Center for Translational Research on Autoimmune & Allergic Diseases - CAAD, University of Piemonte Orientale - UPO
(1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany
(1)
Tags
xref:PubMed:23753177
(3)
pathogen
(2)
pathogen:bacterium
(2)
xref:PubMed:25248950
(1)
xref:PubMed:17630276
(1)
xref:PubMed:36287008
(1)
xref:PubMed:32939877
(1)
xref:PubMed:27462320
(1)
xref:PubMed:41793146
(1)
xref:PubMed:32917737
(1)
xref:PubMed:21656802
(1)
xref:PubMed:22843603
(1)
xref:PubMed:38514801
(1)
xref:PubMed:19638173
(1)
xref:PubMed:39223675
(1)
xref:PubMed:42252129
(1)
xref:PubMed:30877285
(1)
xref:PubMed:41122058
(1)
xref:PubMed:24417440
(1)
xref:PubMed:42090491
(1)
IsPrivate
False
(3)
Model Flag
Non Kinetic
(1)
Classification
bacteria
(2)
Study type
Transcription profiling by array
(26)
RNA-seq of coding RNA
(10)
RNA-seq of non coding RNA
(2)
Plant - High-throughput sequencing
(1)
High-throughput sequencing
(1)
Animal - High-throughput sequencing
(1)
Transcription profiling by tiling array
(1)
Release Date
2025
(253)
2022
(204)
2021
(194)
2023
(187)
2024
(175)
2020
(155)
2019
(115)
2018
(94)
2017
(76)
2016
(72)
2014
(64)
2015
(56)
2026
(48)
2013
(44)
2012
(26)
2011
(21)
2010
(19)
2009
(12)
2008
(6)
2007
(6)
2006
(2)
2003
(2)
2005
(1)
2002
(1)
2001
(1)
1999
(1)
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Polyploidy influences plant-environment interactions in quaking aspen (Populus tremuloides Michx.).
Not available
S-EPMC6527095
|
biostudies-literature
Cite
The potential of plant viruses to promote genotypic diversity via genotype x environment interactions.
Not available
S-EPMC3101144
|
biostudies-literature
Cite
Identification of QTNs, QTN-by-environment interactions for plant height and ear height in maize multi-environment GWAS.
Not available
S-EPMC10716222
|
biostudies-literature
Cite
Functional traits determine plant co-occurrence more than environment or evolutionary relatedness in global drylands.
Not available
S-EPMC4407970
|
biostudies-literature
Cite
Does pollination interact with the abiotic environment to affect plant reproduction?
Not available
S-EPMC11805941
|
biostudies-literature
Cite
Bacterially enhanced plant-growing media for controlled environment agriculture.
Not available
S-EPMC10880579
|
biostudies-literature
Cite
Plant history and soil history jointly influence the selection environment for plant species in a long-term grassland biodiversity experiment.
Not available
S-EPMC8216899
|
biostudies-literature
Cite
A trait-environment relationship approach to participatory plant breeding for organic agriculture.
Not available
S-EPMC9322327
|
biostudies-literature
Cite
Early changes in apoplast composition associated with defence and disease in interactions between Phaseolus vulgaris and the halo blight pathogen Pseudomonas syringae Pv. phaseolicola.
Not available
S-EPMC5026161
|
biostudies-literature
Cite
The plant host environment influences competitive interactions between bacterial pathogens.
Not available
S-EPMC9796116
|
biostudies-literature
Cite
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