Plant-microbe interactions

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Unknown (1318)
Genomics (519)
Transcriptomics (77)
Proteomics (42)
Metabolomics (27)
Methylation profiling (2)
Models (1)
Other (1)

Organisms

Arabidopsis thaliana (32)
Hordeum vulgare (7)
Streptomyces coelicolor (4)
Medicago truncatula (3)
Glycine max (3)
Oryza sativa (3)
Azoarcus sp. (2)
Arachis hypogaea (2)
Solanum lycopersicum (2)
Solanum tuberosum (2)
Azoarcus olearius (2)
Zea mays (2)
Pseudomonas syringae (1)
Arabidopsis (1)
mixed culture KAZ_0815 (1)
Bradyrhizobium japonicum (1)
Oryza sativa Japonica Group (1)
Triticum aestivum (1)
Escherichia coli (1)
Mus musculus (1)
Dickeya solani MK10 (1)
Dickeya dadantii 3937 (1)
Lactiplantibacillus plantarum WCFS1 (1)
uncultured bacterium (1)
Xanthomonas oryzae pv. oryzae (1)
Petunia x hybrida (1)
Phytophthora sojae (1)
Archaea (1)
uncultured soil microorganism (1)
Eukaryota (1)

Organisms

Arabidopsis thaliana (59)
soil metagenome (28)
rhizosphere metagenome (14)
Oryza sativa (11)
Azoarcus olearius (5)
Azoarcus sp. (4)
Zea mays (4)
endophyte metagenome (3)
Oryza sativa Japonica Group (3)
plant metagenome (3)
Blumeria hordei (2)
Marchantia paleacea (2)
Colletotrichum tofieldiae (2)
Xanthomonas oryzae pv. oryzae (2)
Lotus japonicus (2)
phyllosphere metagenome (2)
Bacillus safensis (2)
Nicotiana benthamiana (2)
metagenome (2)
Bacteria (2)
Solanum lycopersicum (2)
root metagenome (2)
Aeromonas sp. H1 (1)
Xanthomonas sp. Leaf148 (1)
Rhizobium sp. PDO1-076 (1)
Xanthomonas euvesicatoria pv. citrumelo F1 (1)
Xanthogaleruca luteola (1)
Rhizobium metallidurans (1)
Pseudomonas granadensis (1)
Dickeya dadantii 3937 (1)

Repository

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pride (34)
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GNPS (4)
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iProX (1)

Tissue

Plant cell (8)
Root (8)
Leaf (6)
Shoot (2)
Cell suspension culture (1)
Diploid cell (1)
Extracellular region part (1)
Protein secretion (1)

Disease

Blumeria graminis hordei (powdery mildew) inoculation (1)
Disease free (1)
Mixed disorder as reaction to stress (1)

Technology Type

Mass Spectrometry (34)
Mass spectrometry (20)
Shotgun proteomics (18)
Data-dependent acquisition (9)
Bottom-up proteomics (8)
Mass spectrometry assay (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Gel-based experiment (2)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Metaproteomics (1)

Instrument Platform

GC-MS (9)
Q Exactive (6)
Q Exactive Plus (4)
Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (3)
Illumina NovaSeq 6000 (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Liquid Chromatography MS - negative - reverse-phase (2)
QuantSeq 3’ mRNA-Seq Library Prep Kit FWD (Lexogen Gmbh, Vienna, Austria) (1)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000 (1)
Agilent 7890A GC with 5975C inert XL MSD (1)
Bruker Daltonics instrument model (1)
Varian NMR (1)
Agilent 5975E GC/MSD (Agilent) (1)
Gas Chromatography MS - (1)
MicrOTOF-Q (1)
5975C Series GC/MSD (Agilent) (1)
Gas Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - positive - HILIC (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2026 (18)
2025 (17)
2022 (15)
2015 (10)
2023 (10)
2011 (9)
2008 (9)
2020 (9)
2010 (8)
2024 (7)
2021 (7)
2017 (6)
2018 (4)
2013 (4)
2019 (4)
2007 (3)
2016 (2)
2014 (2)
2012 (2)
2009 (2)
2004 (2)
2006 (2)
2005 (1)

CHEBI ID

CHEBI:18012 (13)
CHEBI:17148 (12)
CHEBI:15963 (12)
CHEBI:26078 (12)
CHEBI:30769 (12)
CHEBI:17505 (11)
CHEBI:30997 (11)
CHEBI:37654 (11)
CHEBI:15428 (11)
CHEBI:16634 (11)
CHEBI:15741 (11)
CHEBI:17268 (11)
CHEBI:4167 (10)
CHEBI:74324 (10)
CHEBI:16610 (10)
CHEBI:16857 (10)
CHEBI:17754 (10)
CHEBI:30763 (10)
CHEBI:6650 (10)
CHEBI:16534 (9)
CHEBI:16551 (9)
CHEBI:16000 (9)
CHEBI:16540 (9)
CHEBI:16865 (9)
CHEBI:17203 (9)
CHEBI:17196 (9)
CHEBI:24898 (9)
CHEBI:15824 (9)
CHEBI:27956 (9)
CHEBI:17053 (9)

Metabolite Name

Sucrose (11)
Myo-inositol (11)
Fumaric acid (11)
Galactinol (10)
Citric acid (10)
Erythronic acid (10)
Raffinose (10)
4-hydroxybenzoic acid (10)
Succinic acid (10)
Putrescine (10)
Glycine (10)
L-dehydroascorbic acid (9)
D-galactonic acid (9)
1,6-anhydro-beta-D-glucose (9)
Spermidine (9)
D-glucopyranose (9)
D-ribitol (9)
Ferulic acid (9)
L-glyceric acid (9)
L-threonine (9)
L-proline (9)
Malic acid (9)
Glycerol (9)
L-glutamic acid (9)
D-fructose (9)
L-threonic acid (8)
Decane (8)
Palmitic acid (8)
2-hydroxypyridine (8)
Beta-maltose (8)

IsPrivate

False (1)

First Public Date

2026 (115)
2025 (113)
2024 (48)
2019 (33)
2022 (30)
2023 (29)
2014 (28)
2020 (25)
2017 (23)
2021 (22)
2018 (18)
2013 (14)
2015 (10)
2016 (7)
2012 (1)

Classification

bacteria (6)
fungi (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (27)
RNA-seq of coding RNA (6)
Unknown experiment type (2)
High-throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (175)
2022 (154)
2023 (131)
2021 (130)
2024 (113)
2020 (85)
2019 (84)
2018 (76)
2017 (76)
2014 (55)
2016 (45)
2015 (43)
2013 (41)
2012 (33)
2010 (28)
2011 (25)
2026 (18)
2009 (17)
2008 (11)
2005 (4)
2004 (3)
2007 (2)
2006 (2)
2002 (2)
2003 (1)
1998 (1)

Lab affiliation

Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (4)
Department of Biology University of Fribourg Switzerland (3)
School of Biosciences, University of Sheffield, Sheffield, UK (3)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (2)
North Carolina State University (2)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Carnegie Science Mass Spectrometry Facility (1)
Center for Plant Molecular Biology, University of Tübingen, Tübingen, Germany (1)
Department of Plant Pathology and Plant Microbe Biology, Cornell University, United States of America (1)
Department of Plant Pathology, Nanjing Agricultural University, Nanjing 210095, China (1)
Department of Plant Pathology, University of Georgia, Athens, Georgia, USA (1)
Department of Plant Science, McGill University, Montreal (1)
Division of Plant Sciences, University of Dundee at JHI, Scotland, UK (1)
Faculty of Biology & Biotechnology Ruhr-University Bochum D-44780 Bochum Germany (1)
Institute for Plant Sciences, University of Cologne, 50674 Cologne, Germany (1)
Jiangsu Academy of Agricultural Sciences (1)
Mendel University in Brno (1)
National Key Lab of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University (1)
North Carolina State University, department of plant and microbial biology (1)
Norwegian University of Life Sciences, Aas, Norway (1)
Proteome Analytics Leibniz Institute of Plant Biochemistry Weinberg 3 Halle 06124, Germany (1)
The Hong Kong University of Science and Technology (1)
Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Centro de Biociências e Biotecnologia, Laboratório de Química e Função de Proteínas e Peptídeos, Prédio P5, Sala 228, Bairro Parque Califórnia, Campos dos Goytacazes, RS - CEP: 28013-602 (1)
VIB-UGent Center for Plant Systems Biology, Belgium (1)
VIB-UGent Center for Plants Systems Biology (PSB) (1)

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Pritchard2014 - plant-microbe interaction

Pritchard2014 - plant-microbe interaction This model is an abstraction of a generic interaction between microbes, and a plant host. The reactions are generally intended to be representative of processes, not specific molecular mechanisms (except where indicated, eg. for activation of receptors)....

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Coordination of microbe-host homeostasis by crosstalk with plant innate immunity.

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Cyclophilins and Their Functions in Abiotic Stress and Plant-Microbe Interactions.

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