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Unknown (22703)
Transcriptomics (679)
Genomics (262)
Proteomics (152)
Clinical (44)
Metabolomics (36)
Models (16)
Other (3)
Genomic (2)
Methylation profiling (1)
Multiomics (1)

Organisms

Homo sapiens (370)
Mus musculus (146)
Saccharomyces cerevisiae (75)
Arabidopsis thaliana (25)
Rattus norvegicus (23)
Drosophila melanogaster (10)
Colinus virginianus (5)
Drosophila mojavensis (5)
Escherichia coli (5)
Gallus gallus (4)
Macaca mulatta (4)
Schizosaccharomyces pombe (4)
Streptococcus mutans UA159 (3)
Equus caballus (3)
Mammalia (2)
Pan troglodytes (2)
Mucor circinelloides (2)
Salmo salar (2)
Bos taurus (2)
Pseudomonas aeruginosa (2)
Lactococcus lactis (1)
Cavia porcellus (1)
Kalanchoe daigremontiana (1)
Calluna vulgaris (1)
Beauveria bassiana (1)
Streptococcus gordonii str. Challis (1)
Pongo abelii (1)
Gorilla gorilla gorilla (1)
Streptococcus sanguinis (1)
Nicotiana attenuata (1)

Organisms

Homo sapiens (35)
Mus musculus (27)
soil metagenome (12)
Rattus norvegicus (6)
Arabidopsis thaliana (4)
Drosophila mojavensis (3)
sediment metagenome (3)
Gallus gallus (3)
Peromyscus polionotus (2)
Campylobacter jejuni subsp. jejuni NCTC 11168-PO (2)
Oreochromis niloticus (2)
Equus caballus (2)
Macaca mulatta (2)
fish gut metagenome (2)
food metagenome (2)
synthetic construct (2)
Marinomonas posidonica IVIA-Po-181 (1)
Arthrobacter cavernae (1)
Pseudidiomarina homiensis (1)
Marinomonas posidonica (1)
Marinomonas rhizomae (1)
Mycoplasma mycoides subsp. mycoides PO-67 (1)
Peromyscus polionotus subgriseus (1)
Pythium oligandrum (1)
Rickettsia japonica (1)
Strongylocentrotus intermedius (1)
Chlorella sp. (1)
Citrus x limon (1)
Hordeum vulgare (1)
Zoysia sinica (1)

Repository

biostudies-arrayexpress (652)
ENA (229)
pride (128)
geo (56)
MetaboLights (23)
BioModels (15)
EGA (14)
MetabolomicsWorkbench (11)
MassIVE (9)
iProX (5)
jPOST (3)
dbGaP (2)
GNPS (2)
NODE (1)
PMR (1)

Tissue

Cell culture (32)
Brain (6)
Eye tissue (4)
Blood (4)
Blood cell (4)
Blood plasma (4)
Permanent cell line cell (4)
Primary cell (4)
B cell (3)
Bronchial epithelial cell (3)
Epithelial cell (3)
Heart (3)
T cell (3)
Optic nerve (2)
Brain (2)
Bone marrow (2)
Bronchial smooth muscle cell (2)
Cell suspension culture (2)
Colorectal cancer cell line (2)
HeLa cell (2)
Hemolymph (2)
Lung (2)
Spermatogonium (2)
Testis (2)
Venom (2)
Whole body (2)
Neurons (1)
Liver (1)
Blood (1)
Blood serum (1)

Disease

Colorectal Neoplasms (15)
Colorectal cancer (8)
Eye disease (8)
Colorectal Cancer (4)
Colorectal cancer (3)
Alzheimer's disease (2)
Neoplasm Metastasis (2)
Parkinson's disease (1)
XCGD (1)
HIV encephalitis (1)
Large cell carcinoma (1)
Post-stasis (1)
Infiltrating ductal carcinoma (1)
Normal (1)
Colon and rectal cancer (1)
Hemorrhage (1)
Colon Cancer (1)
Unresectable metastatic colorectal cancer (1)
Cancer fatigue (1)
Refractory metastatic colorectal cancer (1)
Advanced colorectal cancer (1)
Diseases of the digestive system (1)
Esophageal cancer, gastric cancer, colorectal cancer (1)
Malignant neoplasm of colon, unspecified (1)
Carcinoma, Non-Small-Cell Lung (1)
Carcinoma (1)
Colonic Neoplasms (1)
Neoplasms (1)
Neuropathy (1)
Diabetes (1)

Technology Type

Mass Spectrometry (139)
Shotgun proteomics (59)
Bottom-up proteomics (41)
Mass spectrometry (17)
Data-dependent acquisition (12)
ESI (11)
Top-down proteomics (9)
Gel-based experiment (8)
Data-independent acquisition (7)
Mass spectrometry assay (6)
HDMSE (4)
SWATH MS (4)
Affinity purification coupled with mass spectrometry proteomics (3)
SRM/MRM (2)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Immunopeptidomics (1)
MSE (1)

Instrument Platform

Illumina NovaSeq 6000 (13)
Illumina HiSeq 2500 (6)
Illumina HiSeq 4000 (3)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
Applied BiosystemsTM GeneChipTM Whole Transcript (WT) PLUS Reagent Kit User Guide (Thermo Fisher Scientific, Waltham, MA, USA). (1)
Applied BiosystemsTM GeneChipTM Clariom S human arrays (1)
PAXgene Blood RNA Kit (PreAnalytiX, Hombrechtikon, Switzerland). (1)
Chromium Next GEM Chip G (1)
10X v3 (1)
BD FACS ARIA III analyser (1)
Computer (1)
10x Genomics Chromium (1)
Affymetrix Fluidics Station FS450; Affymetrix GeneChip Scanner 3000 7G (1)
Affymetrix Mouse Gene 1.0 ST (1)
GeneChip Fluidics Station 450 (1)
GeneChip Scanner 3000 (1)
10x Genomics (1)
GeneChip® Scanner 3000 7G (1)
Affymetrix GeneChip Scanner 3000 (1)
GenePix 4000A [Axon Instruments] (1)
Illumina Genome Analyzer IIx (1)
Axon- GenePix4000B (1)
Variable Atmosphere Incubator (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Illumina NovaSeq X (1)
RNeasy Mini Kit (1)
NextSeq 2000 (1)
DNBSEQ-G400 (1)
BGISEQ-500 (1)

Publication Date

2005 (126)
2013 (78)
2010 (65)
2025 (54)
2012 (52)
2011 (49)
2014 (48)
2015 (44)
2026 (44)
2006 (40)
2008 (38)
2024 (33)
2016 (32)
2023 (32)
2022 (32)
2007 (22)
2018 (19)
2009 (17)
2017 (16)
2021 (13)
2020 (13)
2019 (12)
2002 (10)
2001 (2)
2004 (1)

UNIPROT ID/AC

P32581 (1)
P21190 (1)
P53438 (1)
P39001 (1)
P38615 (1)
Q14609 (1)
P05067 (1)

CHEBI ID

CHEBI:17234 (6)
CHEBI:18237 (5)
CHEBI:6650 (5)
CHEBI:4170 (4)
CHEBI:28300 (4)
CHEBI:30915 (4)
CHEBI:15741 (4)
CHEBI:18012 (4)
CHEBI:15946 (3)
CHEBI:6801 (2)
CHEBI:15351 (2)
CHEBI:15346 (2)
CHEBI:29052 (2)
CHEBI:15361 (2)
CHEBI:16905 (2)
CHEBI:15422 (2)
CHEBI:16761 (2)
CHEBI:16908 (2)
CHEBI:15846 (2)
CHEBI:25608 (1)
CHEBI:40595 (1)
CHEBI:13389 (1)
CHEBI:58273 (1)
CHEBI:26689 (1)
CHEBI:17287 (1)
CHEBI:16919 (1)
CHEBI:25523 (1)
CHEBI:27732 (1)
CHEBI:422 (1)
CHEBI:30744 (1)

Metabolite Name

Adenine (5)
Hypoxanthine (5)
Thiamine (4)
Asparagine (4)
Adenosine (4)
Histamine (4)
Cytosine (4)
2-Hydroxycinnamic acid (4)
Riboflavin (4)
Guanosine (4)
Hypotaurine (3)
Glycolic acid (3)
Uracil (3)
Valine (3)
Thymine (3)
Diethanolamine (3)
Cytarabine (3)
Palmitoylethanolamide (3)
Daidzein (3)
Dehydroascorbic acid (3)
7-Ketocholesterol (3)
L-Glutamic acid (3)
Nicotinamide (3)
Indole (3)
Isoquinoline (3)
Choline (3)
Xanthosine (3)
Ascorbic acid (3)
Lysine (3)
Oleamide (3)

First Public Date

2024 (37)
2026 (35)
2025 (31)
2019 (20)
2017 (20)
2023 (19)
2021 (14)
2014 (14)
2022 (9)
2013 (8)
2020 (6)
2016 (6)
2018 (5)
2015 (3)
2012 (1)
2011 (1)

Modelling Approach

Ordinary differential equation model (12)
Physiologically based pharmacokinetic model (2)
Constraint-based model (1)

Study status

Completed (20)
Recruiting (12)
Not provided (4)
Active, not recruiting (3)
Terminated (2)
Not yet recruiting (2)
Withdrawn (1)

Lab affiliation

Head Proteomics Group, Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (12)
Head Proteomics Group, Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (7)
Head Proteomics Group Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (3)
Institute of Clinical Medicine in National Yang-Ming Chiao Tung University, Taiwan (Muh-Hwa Yang Lab) (3)
Univ. Bordeaux, INSERM, CRCTB, U 1045, F-33000 Bordeaux, France (3)
Abiel Roche-Lima, MSc., PhD. Assistant Professor Director, Integrated Informatics Services core IIS-RCMI University of Puerto Rico Medical Science Campus RCMI Program PO Box 365067 San Juan, PR. 00936-5067 Phone: +1 787 758-2525 x 2194 (2)
Centre de recherche Cardio-Thoracique de Bordeaux, INSERM U1045, PTIB, Hôpital Xavier Arnozan, Avenue du Haut Lévêque, 33604 Pessac Cedex (2)
Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), PO Box 8905, N-7491, Trondheim, Norway Phone: +47 72573075, Fax: +47 72576400 (2)
Head Proteomics Group , Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (2)
Instituto de Nanobiotecnologıa (NANOBIOTEC), UBA-CONICET-Universidad de Buenos Aires, Buenos Aires, Argentina (2)
U1045, CRCTB, Bâtiment PTIB, Avenue de Haut Lévèque, 33000 Bordeaux, France (2)
1 - College of Pharmacy, University of Sharjah, Sharjah 2 - Sharjah Institute for Medical Research, University of Sharjah, Sharjah (1)
Amrita School fo biotechnology Amritapuri campus Clappana po Kollam (1)
Assistant Professor Ramalingaswami Fellow Translational Health Science and Technology Institute NCR Biotech Science Cluster 3rd Milestone, Faridabad - Gurgaon Expressway PO box # 04 FARIDABAD 121001, India (1)
Associate Professor and Head-Proteomics Research, School of Biotechnology, Amrita Vishwa Vidyapeetham, Amritapuri Campus, Clappana PO., Kollam-690525, Kerala, India, Phone- 0476 2803119, 2803110 (lab head) (1)
BIOTECHNOLOGY DIVISION, CSIR-IHBT, PO BOX 6,PALAMPUR, HP, INDIA, 176061 (1)
Biomolecular Measurement Division, National Institute of Standards and Technology (1)
Center Biomol. Struct. & Organization Head, Immunity and Immune Evasion Lab Bachelor of Health and Biomedical Sciences Honours (BH058) Program Manager School of Health and Biomedical Sciences | RMIT University PO Box 71 | Bundoora 3083 | Australia (1)
Center for Computational and Data-Intensive Science and Engineering, Skolkovo Institute of Science and Technology, Moscow 121205, Russia Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital, McGill University, Montreal, Quebec H3T 1E2, Canada; Gerald Bronfman Department of Oncology, Jewish General Hospital, McGill University, Montreal, Quebec H3T 1E2, Canada (1)
Centre de recherche et d’innovation sur les végétaux, Université Laval, Québec, Canada (1)
Centre for Biopharmaceutical Innovation The Australian Institute for Bioengineering and Nanotechnology The University of Queensland (1)
Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, PO Box 1066 Blindern, 0316 Oslo, Norway (1)
Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, PO Box 1066 Blindern, 0316 Oslo, Norway (1)
Chemistry and Biochemistry, University of Windsor, Canada (1)
Chemistry and biochemistry, University of Windsor, Canada (1)
Chemistry and biochemistry, university of windsor, Canada (1)
Clinical Proteomic Platform CHU de Montpellier - Hôpital St. Eloi Institute of Regenerative Medicine - Biotherapy - IRMB 80, av A. Fliche, 34295 Montpellier Cedex 5 (1)
DTU Bioengineering (1)
Deparment of Boichemistry and Structural Biology Center for Molecular Protein Science Lund University PO Box 124 22100 Lund Sweden (1)
Department of Applied Biology and Chemical Technology The Hong Kong Polytechnic University (1)

Keyword

Capecitabine (9)
Oxaliplatin (8)
Bevacizumab (6)
Leucovorin (5)
Fluorouracil (3)
Docetaxel (2)
Erythromycin (2)
Erythromycin Estolate (2)
Erythromycin Ethylsuccinate (2)
Erythromycin stearate (2)
APC gene (2)
Nonsense mutations (2)
Advanced and/or metastatic colorectal cancer (1)
Familial Adenomatous Polyposis (FAP). (1)
SM08502 (1)
Pan Clk/Dyrk inhibitor (1)
Programmed Cell Death 1 Receptor (1)
Abiraterone Acetate (1)
AZD4635 (1)
Oleclumab (1)
Enzalutamide (1)
Polocard (1)
Lower gastrointestinal bleeding (LGIB) (1)
Large colorectal polyps (1)
ASA (1)
Acetylsalicylic acid (1)
Prednisone (1)
Dekristol® 20 000 I.E. Weichkapseln (1)
Dekristol® 1000 I.E. Tabletten (1)
Polypectomy (1)

IsPrivate

False (15)

Model Flag

Non Kinetic (2)

Submitter Keywords

Immuno-oncology (1)

Classification

bacteria (6)

Study type

Transcription profiling by array (381)
Unknown experiment type (93)
RNA-seq of coding RNA (51)
Interventional (42)
Methylation profiling by array (19)
ChIP-chip by array (16)
Other (16)
ChIP-chip by tiling array (15)
Comparative genomic hybridization by array (13)
ChIP-seq (12)
RNA-seq of coding RNA from single cells (7)
Transcription profiling by RT-PCR (5)
Proteomic profiling by array (5)
RNA-seq of non coding RNA (5)
Transcription profiling by tiling array (3)
Transcription profiling by SAGE (2)
Antigen profiling (2)
Observational (2)
Human - Methylation microarray (1)
RNAi profiling by array (1)
Ribo-seq (1)
MicroRNA profiling by array (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2021 (1952)
2020 (1861)
2022 (1858)
2023 (1676)
2019 (1665)
2025 (1522)
2018 (1481)
2024 (1341)
2017 (1282)
2016 (1230)
2015 (1215)
2014 (914)
2012 (885)
2013 (769)
2011 (747)
2010 (688)
2009 (529)
2008 (424)
2005 (269)
2007 (254)
2006 (234)
2026 (201)
2003 (83)
2002 (81)
2004 (74)
2001 (55)
2000 (43)
1999 (11)
1998 (7)
1997 (2)

Location

Japan (11)
China (9)
United States (9)
Italy (7)
Germany (6)
Israel (6)
Spain (6)
Australia (6)
United Kingdom (5)
France (5)
South Korea (4)
Belgium (4)
Canada (4)
South Africa (3)
Finland (3)
Taiwan (3)
New Zealand (3)
Portugal (3)
Greece (3)
Poland (3)
Brazil (3)
Hungary (3)
Austria (3)
Switzerland (3)
Panama (2)
Hong Kong (2)
Ireland (2)
Thailand (2)
Puerto Rico (2)
Mexico (2)

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Peromyscus polionotus strain:PO

Peromyscus polionotus subgrisieus PO transcriptome - PepoBrTs

PRJNA584484 | ENA

Peromyscus polionotus strain:PO

Peromyscus polionotus subgrisieus PO transcriptome - Perpo_brain+testes

PRJNA584485 | ENA

Campylobacter jejuni subsp. jejuni NCTC 11168-PO

Campylobacter jejuni subsp. jejuni NCTC 11168-PO Genome sequencing

PRJNA159829 | ENA

Mycoplasma mycoides subsp. mycoides PO-67

Mycoplasma mycoides subsp. mycoides PO-67 Genome sequencing and assembly

PRJNA164795 | ENA

Chlamydia psittaci strain:Po An

Chlamydia psittaci Po An raw sequence reads

PRJNA312250 | ENA

Saturated fat stimulates obesity and hepatic steatosis and affects gut microbiota composition by an enhanced overflow of dietary fat to the distal intestine

We studied the effect of dietary fat type, varying in polyunsaturated/saturated fatty acid ratio's (P/S) on development of metabolic syndrome. C57Bl/6J mice were fed purified high-fat diets (45E% fat) containing palm oil (HF-PO; P/S 0.4), olive oil (HF-OO; P/S 1.1) or safflower oil (HF-SO; P/S 7.8) ...

ORGANISM(S): Mus musculus

2012-06-17 | E-GEOD-18586 | biostudies-arrayexpress

Sediment Lagune Delta Po

Sediment Lagune Delta Po Raw sequence reads

PRJNA1136808 | ENA

Pseudidiomarina homiensis strain:PO-M2

Idiomarina homiensis PO-M2 Genome sequencing and assembly

PRJNA420126 | ENA

Pythium oligandrum strain:PO-1

Pythium oligandrum strain:PO-1 Genome sequencing and assembly

PRJNA731617 | ENA

Arthrobacter cavernae strain:PO-11