Post-transcriptional regulator

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Organisms

Mus musculus (244)
Homo sapiens (184)
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Schizosaccharomyces pombe (6)
Rattus norvegicus (6)
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Fusobacterium nucleatum subsp. nucleatum ATCC 23726 (1)
Klebsiella pneumoniae subsp. pneumoniae ATCC 43816 (1)

Repository

biostudies-arrayexpress (722)
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pride (71)
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Tissue

Cell culture (16)
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Technology Type

Mass Spectrometry (71)
Shotgun proteomics (47)
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Affinity purification coupled with mass spectrometry proteomics (8)
Data-dependent acquisition (4)
Gel-based experiment (3)
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SWATH MS (2)
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Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (15)
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Illumina HiSeq 2000 (8)
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NextSeq 500 (5)
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Q Exactive (4)
Q Exactive HF (3)
Agilent G2565AA and G2565BA Microarray Scanner (2)
Illumina MiSeq (2)
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HPC (1)
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418 [Affymetrix] (1)
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Illumina HiSeq 1000 (1)
MinION (1)
Instrument (1)

Publication Date

2026 (127)
2010 (112)
2012 (105)
2014 (100)
2013 (98)
2015 (92)
2025 (87)
2011 (83)
2016 (60)
2023 (52)
2024 (49)
2022 (47)
2021 (46)
2020 (45)
2018 (43)
2008 (42)
2009 (34)
2017 (32)
2019 (30)
2007 (11)
2006 (8)
2005 (5)
2004 (3)

UNIPROT ID/AC

O75676 (1)
O75582 (1)
Q13547 (1)
Q9NYS0 (1)
Q9NNX6 (1)
Q9NQ31 (1)
Q9UHD2 (1)
Q99558 (1)
P29965 (1)
Q94BT6 (1)
Q6R0H1 (1)
P92973 (1)
P37231 (1)
Q9Y297 (1)
Q15759 (1)
P68400 (1)
P25963 (1)
Q93WK5 (1)
Q8L500 (1)
Q9SQI2 (1)
Q9LKL2 (1)
P28482 (1)
P17612 (1)

CHEBI ID

CHEBI:35222 (1)
CHEBI:36080 (1)
CHEBI:33699 (1)
CHEBI:172955 (1)
CHEBI:172954 (1)
CHEBI:172953 (1)
CHEBI:172952 (1)
CHEBI:172951 (1)
CHEBI:42758 (1)
CHEBI:24301 (1)
CHEBI:172950 (1)
CHEBI:47014 (1)
CHEBI:141282 (1)
CHEBI:141281 (1)
CHEBI:141280 (1)
CHEBI:141279 (1)
CHEBI:141275 (1)
CHEBI:141274 (1)
CHEBI:141273 (1)
CHEBI:136791 (1)
CHEBI:136788 (1)
CHEBI:141257 (1)
CHEBI:141256 (1)
CHEBI:138899 (1)
CHEBI:141255 (1)
CHEBI:141253 (1)
CHEBI:141236 (1)
CHEBI:141233 (1)
CHEBI:141232 (1)
CHEBI:141231 (1)

Metabolite Name

1-O-((3.beta.,5.Xi.,9.Xi.,18.Xi.,19.Xi.,20.Xi.)-3-((6-Deoxyhexopyranosyl)oxy)-27-hydroxy-27,28-dioxours-12-en-28-yl)-6-O-hexopyranosylhexopyranose (1)
MCULE-7407861812 (1)
NCGC00381308-01 (1)
Ncgc00169736-02!(3r,5r)-3,4,5-tris[[(e)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy]-1-hydroxycyclohexane-1-carboxylic acid (1)
2-[2-[(E)-(Isonicotinoylhydrazono)methyl]phenoxy]acetic acid (1)
5-(4-Hydroxyphenyl)-1-[2-(4-hydroxyphenyl)ethyl]pentyl 2-O-D-apio-.beta.-D-furanosyl-.beta.-D-glucopyranoside (1)
Kaempferol 3-glucoside 7-rhamnoside (1)
CHEMBL2326941 (1)
Indigoticoside A (1)
12-Deoxyphorbol 13-laurate (1)
.beta.-Linoleoyl-.alpha.-glycerophosphorylcholine (1)
CHEBI:139416 (1)
17:0 Lyso PC (1)
Dilauroylphosphatidic acid (1)
SCHEMBL19999136 (1)
MEGxp0_001059 (1)
4-(4-(4-Hydroxy-3-methoxyphenyl)tetrahydro-1H,3H-furo[3,4-c]furan-1-yl)-2-methoxyphenyl hexopyranoside (1)
Maslic acid (1)
5-Hydroxy-1,7,7-trimethylbicyclo[2.2.1]heptan-2-yl 6-O-(3,4-dihydroxy-4-(hydroxymethyl)tetrahydrofuran-2-yl)hexopyranoside (1)
2-(4-Methylcyclohex-3-en-1-yl)propan-2-yl 6-O-(6-deoxy-.alpha.-L-mannopyranosyl)-.beta.-D-glucopyranoside (1)
23-Hydroxytormentic acid (1)
6-O-.beta.-D-Glucopyranosyl-1-O-((3.beta.,5.xi.,9.xi.)-3,19,24-trihydroxy-24,28-dioxours-12-en-28-yl)-.beta.-D-glucopyranose (1)
3,19-Dihydroxyurs-12-ene-23,28-dioic acid (1)
1-O-(2,3,19,23-Tetrahydroxy-23,28-dioxours-12-en-28-yl)hexopyranose (1)
3,5-Di-O-caffeoyl-4-O-(3-hydroxy-3-methyl)glutaroylquinic acid (1)
2,7-Dihydroxy-8-(5-hydroxy-7-isopropyl-3-keto-4-methyloct-7-enyl)-4a,7-dimethyl-1,2,3,4,5,6,8,9,10,10a-decahydrophenanthrene-1-carboxylic acid (1)
Jasminoside R (1)
MMV689029 (1)
(3.beta.,5.xi.,9.xi.)-3,6,19-Trihydroxyurs-12-en-28-oic acid (1)
6-Deoxy-.alpha.-L-mannopyranosyl-(1->3)-[.beta.-D-glucopyranosyl-(1->6)]-1-O-(3,27-dihydroxy-27,28-dioxolup-20(29)-en-28-yl)-.beta.-D-glucopyranose (1)

First Public Date

2026 (143)
2025 (88)
2024 (69)
2014 (58)
2023 (56)
2021 (45)
2020 (43)
2022 (37)
2017 (36)
2018 (35)
2019 (26)
2016 (17)
2015 (12)
2013 (8)

Modelling Approach

Other (1)
Ordinary differential equation model (1)

Lab affiliation

University of Cologne (3)
Cologne Excellence Cluster for Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Joseph Stelzmann Strasse 26, 50931 Cologne, Germany. (2)
Max Delbruck Center for Molecular Medicine, Robert-Rössle-Str. 10, D-13092 Berlin, Germany (2)
1. Faculty of Biology, Technion - Israel Institute of Technology, Haifa 320003, Israel 2. Computer Science Department, Technion - Israel Institute of Technology, Haifa 320003, Israel (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark (2)
Department of Biochemistry and System Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 7ZB, UK (1)
Helmholtz Institute for RNA-based Infection Research (HIRI), Helmholtz Centre for Infection Research (HZI), Würzburg, Germany (1)
Multicellular Systems Friedrich Miescher Institute for Biomedical Research (1)
German Cancer Research Center (DKFZ), Im Neuenheimer Feld 581, 69120 Heidelberg, Germany (1)
Microbiology, Immunology and Pathology Department; Colorado State University; USA (1)
Proteomics Unit - National Center for Biotechnology (CNB-CSIC) (1)
Cell Biophysics, Nencki Institute, Warsaw, Poland (1)
Max Planck Institute of Biochemistry Department of Proteomics and Signal Transduction Am Klopferspitz 18 82152 Martinsried, Germany (1)
Group Leader Proteostasis Charité Universitätsmedizin Berlin, Germany (1)
Department of Cardiac Development and Remodelling, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany. (1)
Segal Cancer Proteomics Centre, Lady Davis Institute for Medical Research, Jewish General Hospital, Montréal, Quebec, H3T 1E2, Canada Gerald Bronfman Department of Oncology, McGill University, Montréal, Quebec H4A 3T2, Canada Department of Pathology, McGill University, Montréal,Quebec H4A 3J1, Canada (1)
Proteomics Platform CIC bioGUNE, Bizkaia Tec. Park Build. 800, derio 48160 Bizkaia (Spain) (1)
Cologne Excellence Cluster for Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Joseph Stelzmann Strasse 26, 50931 Cologne, Germany (1)
John Innes Centre / University of East Anglia (1)
Microbial Genomic Laboratory Division of Biological and Environmental Sciences and Engineering, Level 4, 4326-WS10, Building 2, King Abdullah University of Science and Technology (KAUST), (1)
Head of Discovery Proteomics Facility (1)
Institute for Research in Biomedicine, Università della Svizzera italiana, Via Francesco Chiesa 6, CH6500 Bellinzona, Switzerland (1)
Max Delbrück Center for Molecular Medicine, Robert-Roessle-Str. 10, D-13092 Berlin, Germany Charité-Universitätsmedizin Berlin, 10117 Berlin, Germany (1)
Departamento de Biotecnología Microbiana, Centro Nacional de Biotecnología, CSIC, Madrid, Spain. (1)
Institute for Clinical and Translational Research, University of Wisconsin - Madison (1)
Department of Biochemistry & Biomedicine, School of Life Sciences, University of Sussex (1)
1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 1L7, Canada 2 Department of Molecular Genetics, University of Toronto, Toronto, ON M5S1A5, Canada (1)
Departamento de Biología Celular, Biología Funcional y Antropología Física,Instituto de Biotecnología y Biomedicina (1)
State Key Laboratory of Trauma and Chemical Poisoning, Third Military Medical University, Chongqing, China (1)
Department of Biology, Southern University of Science and Technology, China (1)

IsPrivate

False (2)

Classification

bacteria (51)
protozoa (12)
fungi (7)
helminths (2)

Study type

Transcription profiling by array (447)
RNA-seq of coding RNA (105)
ChIP-seq (41)
RNA-seq of non coding RNA (34)
ChIP-chip by tiling array (12)
Other (12)
RNAi profiling by array (10)
Unknown experiment type (9)
Transcription profiling by tiling array (8)
Methylation profiling by array (6)
Comparative genomic hybridization by array (5)
RNA-seq of total RNA (5)
MicroRNA profiling by array (4)
RNA-seq of coding RNA from single cells (4)
Cell line - High-throughput sequencing (2)
CLIP-seq (2)
RIP-seq (2)
Ribo-seq (2)
Methylation profiling by high throughput sequencing (2)
Two-color microarray (1)
Animal - One-color microarray (1)
Plant - High-throughput sequencing (1)
Plant - One-color microarray (1)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by high throughput sequencing (1)
Single nucleus RNA sequencing (1)
Proteomic profiling by array (1)
CUT&RUN (1)

Release Date

2015 (139)
2013 (136)
2014 (132)
2025 (129)
2010 (128)
2022 (121)
2012 (121)
2021 (120)
2011 (119)
2023 (111)
2016 (102)
2019 (98)
2024 (92)
2018 (91)
2017 (88)
2020 (79)
2009 (49)
2008 (49)
2026 (27)
2007 (15)
2006 (10)
2005 (7)
2004 (5)
2003 (1)
2001 (1)
2000 (1)

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SAM68 is a crucial post-transcriptional regulator of cardiogenesis

PRJNA1445016 | ENA

Detailed map of the Pseudomonas aeruginosa Crc regulon using a new parameter for tracking post-transcriptional regulation

Bacterial physiology in general and the bacterial response to the presence of nutrients and to external signals in particular is regulated at different levels, from mRNA synthesis to translational regulation and protein modification. However, there are not standardized parameters for defining post-t...

ORGANISM(S): Pseudomonas aeruginosa PAO1

2018-11-13 | PXD009809 | Pride

P. aeruginosa Pseudomonas aeruginosa Post-transcriptional regulation

Post-transcriptional control of a stemness signature by RNA-binding 8 protein MEX3A regulates adult neurogenesis

Neural stem cells (NSCs) in the adult mammalian subependymal zone maintain a glial identity and the developmental potential to generate neurons during the lifetime. Production of neurons from these NSCs is not direct but follows an orderly pattern of cell progression which allows the gradual increas...

ORGANISM(S): Mus musculus (Mouse)

2023-01-08 | PXD038983 | Pride

Mammalian neurogenesis Mex3a Neuronal differentiation Post-transcriptional regulator

CSDE1 is a Post Transcriptional Regulator of the LDL Receptor

PRJNA852415 | ENA

Analysis of the contribution of the post-transcriptional regulator CsrA to translation during exponential growth in Escherichia coli

PRJNA421559 | ENA

Cleavage Factor Im as a key regulator of 3’ UTR length

In eukaryotes, the 3' ends of RNA polymerase II-generated transcripts are made in the majority of cases by site-specific endonucleolytic cleavage, followed by the addition of a poly(A) tail. By alternative polyadenylation, a gene can give rise to multiple mRNA isoforms that differ in the length of t...

ORGANISM(S): Homo sapiens

2012-10-30 | E-GEOD-40137 | biostudies-arrayexpress

The exoribonuclease Xrn1 is a post-transcriptional negative regulator of autophagy.

Not available

S-EPMC6070002 | biostudies-literature

Unr is a potential post-transcriptional master regulator of protein expression

PRJNA485061 | ENA

RNA binding partners of the post-transcriptional regulator CsrA

Analysis of RNA binding partners of the post-transcriptional regulator CsrA to translation during exponential growth in Escherichia coli

ORGANISM(S): Escherichia coli str. K-12 substr. MG1655

2017-12-06 | GSE102380 | GEO

Analysis of the contribution of the post-transcriptional regulator CsrA to RNA stability in Salmonella during growth in LB and mLPM media

PRJNA421560 | ENA

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