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Unknown (43182)
Transcriptomics (4578)
Genomics (1739)
Proteomics (658)
Metabolomics (89)
Clinical (67)
Methylation profiling (18)
Models (14)
Other (12)
Genomic (8)
Multiomics (5)

Organisms

Homo sapiens (2461)
Mus musculus (1262)
Arabidopsis thaliana (191)
Rattus norvegicus (136)
Drosophila melanogaster (101)
Saccharomyces cerevisiae (68)
Danio rerio (55)
Sus scrofa (48)
Oryza sativa (43)
Gallus gallus (36)
Bos taurus (34)
Zea mays (32)
Caenorhabditis elegans (31)
Oryza sativa Japonica Group (21)
Escherichia coli (18)
Glycine max (18)
Streptococcus pneumoniae D39 (16)
Macaca mulatta (14)
Canis lupus familiaris (14)
Triticum aestivum (12)
Plasmodium falciparum (10)
Schizosaccharomyces pombe (9)
Vibrio cholerae (9)
Oncorhynchus mykiss (9)
Ovis aries (9)
Medicago truncatula (8)
Arabidopsis (2)
cellular organisms (2)
Pseudomonas syringae (1)
Mammalia (1)

Organisms

Homo sapiens (383)
Mus musculus (164)
Phanerodontia chrysosporium (33)
Drosophila melanogaster (13)
Arabidopsis thaliana (13)
Oryza sativa (11)
Phytophthora ramorum (10)
Sus scrofa (9)
Rattus norvegicus (9)
Solanum lycopersicum (7)
marine metagenome (7)
soil metagenome (7)
Plasmodium falciparum 3D7 (6)
Sinorhizobium meliloti (6)
Daphnia pulex (6)
Zea mays (6)
Glycine max (5)
Gymnopilus chrysopellus PR-1187 (4)
Brassica napus (4)
Bacteroides thetaiotaomicron (4)
Urocitellus parryii (3)
Canis lupus familiaris (3)
Danio rerio (3)
Oryza sativa Japonica Group (3)
unidentified (3)
Solanum tuberosum (3)
Marasmius fiardii PR-910 (2)
Bougainvillea buttiana (2)
Panus rudis PR-1116 ss-1 (2)
Streptomyces phytohabitans (2)

Repository

biostudies-arrayexpress (4336)
ENA (1094)
pride (498)
geo (494)
EGA (437)
MassIVE (76)
MetaboLights (65)
jPOST (23)
iProX (22)
MetabolomicsWorkbench (19)
BioModels (14)
PeptideAtlas (10)
dbGaP (8)
PanoramaPublic (7)
GNPS (5)
LINCS (5)
GPMDB (4)
EVA (2)
PAXDB (2)
ExpressionAtlas (1)

Tissue

Cell culture (97)
Epithelial cell (38)
Brain (30)
Blood plasma (20)
Leaf (18)
Whole body (18)
Permanent cell line cell (17)
Blood (16)
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Blood cell (13)
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Early embryonic cell (10)
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Cerebrospinal fluid (8)
Macrophages (5)
Cultured cells (5)
Others (5)
Cells (2)
Lung (2)
Plasma Non-glyco (2)
Mesenteric lymph (1)
Plasmodium cells (1)
Fibroblast cells (1)
Epithelial cells (1)
Blood (1)
Brain (1)
Eye (1)

Disease

Breast cancer (27)
Normal (8)
Melanoma (5)
Alzheimer's disease (2)
Testicular seminoma (1)
CLL (1)
Arrhythmias and right ventricular dysfunction (1)
GIP-dependent Cushing's syndrome (1)
HPV positive (1)
Pancreatitis (1)
Osteosarcoma subtype fibroblastic (1)
High grade glioblastoma (1)
Cocaine addiction (1)
Ewing family tumor (1)
Primary effusion lymphoma (PEL) (1)
DNA damage (1)
Uninfected (1)
None (1)
Schizophrenia (1)
Triple negative breast cancer (1)
Primary tumor (1)
Critical chronic obstructive pulmonary disease (1)
Leukemia (1)
Familial adenomatous polyposis (FAP) (1)
Renal cell carcinoma (1)
Reference (1)
VSV infection (1)
Glioblastoma (1)
Prostate carcinoma (1)
Adenocarcinoma (1)

Technology Type

Mass Spectrometry (517)
Shotgun proteomics (296)
Bottom-up proteomics (76)
Affinity purification coupled with mass spectrometry proteomics (63)
Mass spectrometry (47)
Data-dependent acquisition (34)
Gel-based experiment (33)
Data-independent acquisition (21)
ESI (19)
SWATH MS (17)
Chemical cross-linking coupled with mass spectrometry proteomics (14)
Mass spectrometry assay (11)
Top-down proteomics (11)
Illumina 15K (8)
NMR spectroscopy (8)
Immunopeptidomics (5)
Fluorescence imaging (4)
Fluorescence intensity (4)
SRM/MRM (4)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (3)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 4000 (1)
NextSeq 500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina 1.2M, Affymetrix 6.0, Affymetrix 6.0 - CHIAMO (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer II (1)
Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II (1)
Chemiluminescence (1)
ELISA (1)

Instrument Platform

Illumina NovaSeq 6000 (26)
NextSeq 500 (20)
Axon GenePix 4000A scanning hardware (15)
Illumina HiSeq 2000 (13)
Illumina HiSeq 4000 (11)
Illumina HiSeq 2500 (10)
DNBSEQ-T7 (5)
Qubit (2)
ScanArray scanning hardware (2)
ScanArray 4000 [PerkinElmer] (2)
Illumina Genome Analyzer IIx (2)
Illumina Genome Analyzer II (2)
NA (2)
DNBSEQ-G400 (2)
BGISEQ-500 (2)
Illumina MiSeq (2)
Illumina HiSeq 1500 (2)
NextSeq 550 (2)
UC Irvine HPC (1)
Bioanalyzer, Nanodrop, (1)
ATAC-seq kit (Catalog No. 53150, Active Motif) (1)
10X Genomics Single Cell, V3.1 (1)
-- (1)
Lipofectamine RNAiMax transfection reagent (Invitrogen) (1)
CO₂ incubator (Thermo Fisher Scientific) (1)
Illumina TruSeq Stranded mRNA Library Prep Kit (1)
Agilent 2100 Bioanalyzer; Illumina TruSeq Stranded mRNA Prep Kit (1)
Biological safety cabinet (Thermo Fisher Scientific) (1)
MSI GP76 Leopard 10UE-060ES Intel Core i7-10870H/16GB/1TB SSD/RTX 3060/17.3\ (1)
Manual protocol (1)

Publication Date

2015 (752)
2010 (701)
2013 (653)
2014 (526)
2012 (493)
2011 (492)
2016 (240)
2008 (225)
2009 (186)
2022 (169)
2025 (144)
2007 (122)
2024 (120)
2023 (119)
2021 (115)
2020 (96)
2026 (87)
2019 (87)
2018 (75)
2017 (52)
2006 (46)
2005 (33)
2004 (9)
2003 (6)
2002 (2)

UNIPROT ID/AC

Q00534 (1)
P30281 (1)
P30279 (1)
P50148 (1)
P11802 (1)
P19174 (1)
Q01094 (1)
P24941 (1)
P0DP23 (1)
P06400 (1)
P24864 (1)
P24385 (1)
P01106 (1)
P11216 (1)
P04049 (1)
Q02750 (1)
P28482 (1)
14331_ORYSJ (1)
14332_ORYSJ (1)
14333_ORYSJ (1)
14334_ORYSJ (1)
14335_ORYSJ (1)
14336_ORYSJ (1)
1433B_HUMAN (1)
1433E_HUMAN (1)
1433F_HUMAN (1)
1433G_HUMAN (1)
1433S_HUMAN (1)
1433T_HUMAN (1)
1433Z_HUMAN (1)

ENSEMBL ID

ENSG00000170477 (7)
ENSG00000229353 (4)
ENSG00000147251 (1)

CHEBI ID

CHEBI:18237 (12)
CHEBI:28300 (11)
CHEBI:15354 (11)
CHEBI:15428 (10)
CHEBI:28044 (10)
CHEBI:16359 (10)
CHEBI:16027 (9)
CHEBI:25094 (9)
CHEBI:18186 (9)
CHEBI:25017 (9)
CHEBI:15741 (9)
CHEBI:15891 (9)
CHEBI:18012 (9)
CHEBI:17234 (7)
CHEBI:15422 (5)
CHEBI:16761 (5)
CHEBI:15846 (5)
CHEBI:29108 (2)
CHEBI:5656 (1)
CHEBI:39124 (1)
CHEBI:26689 (1)
CHEBI:17287 (1)
CHEBI:23888 (1)
CHEBI:29101 (1)
CHEBI:16595 (1)
CHEBI:16004 (1)
CHEBI:17138 (1)
CHEBI:15361 (1)
CHEBI:16908 (1)
CHEBI:18021 (1)

Metabolite Name

Creatine (11)
Glycine (9)
L-Glutamine (9)
Adenine (9)
Hypoxanthine (9)
Choline (8)
Taurine (8)
Glycerophosphocholine (8)
L-Phenylalanine (8)
Trigonelline (7)
Adenosine (7)
Guanine (7)
Glutamine (7)
L-Tyrosine (7)
Histidine (6)
Leucine (6)
Betaine (6)
Ornithine (6)
Cholesterol (6)
Indole (6)
Tyrosine (6)
Riboflavin (6)
L-Serine (6)
Xanthine (6)
Sucrose (6)
L-Valine (6)
L-Isoleucine (6)
L-Methionine (6)
Glutamate (5)
4-Hydroxyproline (5)

First Public Date

2014 (196)
2024 (107)
2019 (97)
2023 (96)
2025 (95)
2026 (86)
2021 (72)
2022 (68)
2020 (62)
2015 (49)
2018 (48)
2017 (48)
2013 (36)
2016 (33)
2010 (1)

Modelling Approach

Ordinary differential equation model (10)
Delayed differential equation model (2)
Constraint-based model (1)

Study status

Completed (33)
Recruiting (14)
Ongoing (6)
Not yet recruiting (6)
Terminated (4)
Not provided (3)
Active, not recruiting (1)

Lab affiliation

State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046, PR China (9)
PROBE (7)
Washington University in St. Louis (4)
Barts Cancer Institute. Queen Mary University of London (3)
Cell Signalling (3)
Department of Molecular Medicine The Scripps Research Institute (3)
Huazhong Agricultural University (3)
National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, China (3)
Signalling ISP, Babraham Institute, Cambridge, UK (3)
University of Arizona College of Medicine, Department of Medicine, Division of Endocrinology (3)
Abiel Roche-Lima, MSc., PhD. Assistant Professor Director, Integrated Informatics Services core IIS-RCMI University of Puerto Rico Medical Science Campus RCMI Program PO Box 365067 San Juan, PR. 00936-5067 Phone: +1 787 758-2525 x 2194 (2)
Barts Cancer Institute (2)
CNIO (2)
Cambridge Institute for Medical Research, University of Cambridge, Cambridge Biomedical Campus, CB2 0XY, UK (2)
Carnegie Mass Spectrometry Facility (2)
Carnegie Mass Spectrometry Facility, Carnegie Institution for Science at Stanford (2)
Centre for Genomics and Computational Biology, Barts Cancer Institute, Queen Mary University of London (2)
College of Agronomy, Jiangxi Agricultural University (2)
Department of Medicine, Division of Endocrinology, University of Arizona College of Medicine (2)
Department of Peptide-based Immunotherapy, Institute of Immunology, University and University Hospital Tübingen, Tübingen, Germany (2)
Head of Lab of Cancer Signaling GIGA-institute Université de Liège CHU, B34, Tour GIGA (+2) B-4000 Liège (2)
IMBA - Institute of Molecular Biotechnology Dr. Bohrgasse 3 1030 Vienna Austria (2)
Instituto Carlos Chagas, Fundação Oswaldo Cruz (Fiocruz), Curitiba, Brazil. (2)
MRC Toxicology Unit, University of Cambridge (2)
Martin R. Larsen's Group, PR Group, Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark (2)
Massachusetts Institute of Technology (2)
National Center for Protein Sciences Beijing, State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Lifeomics, Beijing 102206, PR China (2)
Pacific Northwest National Laboratory, USA (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Associate Editor, ACS Chemical Biology (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Executive Editor, ACS Chemical Biology (2)

Tags

pathogen (37)
pathogen:bacterium (23)
pathogen:protozoan (7)
xref:PubMed:35018885 (6)
xref:PubMed:33854067 (6)
xref:PubMed:20511434 (6)
xref:PubMed:35837267 (6)
xref:PubMed:29069476 (6)
xref:PubMed:30115973 (5)
xref:PubMed:39388542 (5)
xref:PubMed:21292972 (5)
xref:PubMed:35285670 (4)
xref:PubMed:36357125 (4)
xref:PubMed:38049829 (4)
xref:PubMed:31231679 (4)
xref:PubMed:37307441 (4)
xref:PubMed:17132046 (4)
pathogen:virus (4)
xref:PubMed:32681107 (3)
xref:PubMed:27386569 (3)
xref:PubMed:26577046 (3)
xref:PubMed:26249178 (3)
xref:PubMed:26153859 (3)
xref:PubMed:27783953 (3)
xref:PubMed:25822250 (3)
xref:PubMed:36959757 (3)
xref:PubMed:25751060 (3)
xref:PubMed:22545144 (3)
xref:PubMed:25499759 (3)
xref:PubMed:40654762 (3)

Keyword

Cetuximab (8)
Capecitabine (6)
Irinotecan (5)
Panitumumab (4)
Bevacizumab (4)
Fluorouracil (4)
Oxaliplatin (4)
Oxycodone naloxone combination (3)
Oxycodone (3)
Naloxone (3)
Folic Acid (3)
Leucovorin (3)
Levoleucovorin (3)
Naloxone Hydrochloride Prolonged Release Tablets (2)
Maintenance therapy (2)
Oxycodone prolonged release tablet 10mg (2)
Oxycodone prolonged release tablet 20mg (2)
Severe chronic and non-malignant pain (2)
Malignant and non-malignant pain that requires around-the clock opioid therapy (2)
Erbitux (2)
CRC (2)
Mektovi (1)
Tyverb (1)
Gemcitabine (1)
Paclitaxel (1)
Cisplatin (1)
Nivolumab (1)
Calcio Levofolinato (1)
Azacitidine. (1)
Vinorelbine (1)

IsPrivate

False (14)

Submitter Keywords

Immuno-oncology (3)
Oncology (1)
FROG (1)

Classification

bacteria (23)
protozoa (7)
viruses (4)
fungi (2)
helminths (1)

Modification

Not available (3)
4-tetrahydrothiazine-3-carboxylic acid (2)
-17.026549 (1)
15.994915 (1)
27.994915 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
79.966331 (1)

Study type

Transcription profiling by array (3090)
RNA-seq of coding RNA (499)
Unknown experiment type (145)
RNA-seq of non coding RNA (103)
ChIP-seq (93)
Comparative genomic hybridization by array (79)
Other (57)
Methylation profiling by array (47)
ChIP-chip by tiling array (43)
Transcription profiling by SAGE (34)
Transcription profiling by tiling array (21)
Transcription profiling by RT-PCR (19)
Proteomic profiling by array (19)
DNA-seq (11)
Genotyping by array (9)
Methylation profiling by high throughput sequencing (8)
MicroRNA profiling by array (7)
RNA-seq of total RNA (7)
RNA-seq of coding RNA from single cells (6)
Cell line - High-throughput sequencing (5)
ChIP-chip by array (5)
High-throughput sequencing (3)
RNAi profiling by array (3)
ATAC-seq (3)
MicroRNA profiling by high throughput sequencing (2)
ChIP-chip by SNP array (1)
Transcription profiling by MPSS (1)
Baseline (1)
Differential (1)
Human - Methylation microarray (1)

Release Date

2025 (4807)
2022 (4435)
2023 (4211)
2021 (4182)
2024 (3878)
2020 (3386)
2019 (2568)
2015 (2455)
2018 (2414)
2016 (2243)
2017 (2019)
2014 (1934)
2013 (1802)
2010 (1372)
2012 (1349)
2011 (1287)
2009 (844)
2026 (678)
2008 (657)
2007 (316)
2006 (195)
2005 (137)
2004 (78)
2003 (73)
2002 (54)
2000 (44)
2001 (41)
1998 (29)
1999 (16)
1997 (6)

Location

China (14)
Germany (12)
United States (12)
Italy (10)
Spain (10)
United Kingdom (9)
Czechia (5)
Canada (5)
Austria (5)
France (5)
Belgium (4)
Netherlands (4)
Australia (4)
Japan (4)
Slovakia (3)
India (3)
Denmark (3)
Hungary (3)
Finland (2)
North America (2)
Poland (2)
Switzerland (2)
Norway (1)
Ireland (1)
Latvia (1)
Slovenia (1)
Sri Lanka (1)
Estonia (1)
New Zealand (1)
Puerto Rico (1)

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Gymnopilus chrysopellus PR-1187

Gymnopilus chrysopellus PR-1187 Transcriptome - PDA

PRJNA460278 | ENA

Gymnopilus chrysopellus PR-1187

Gymnopilus chrysopellus PR-1187 Transcriptome - MEA

PRJNA460277 | ENA

Gymnopilus chrysopellus PR-1187

Gymnopilus chrysopellus PR-1187 Transcriptome - PDA-2

PRJNA460279 | ENA

Halomonas sp. PR-M31

Halomonas sp. PR-M31 Genome sequencing and assembly

PRJNA240143 | ENA

Transcription profiling of human cell lines under bioreductive prodrug PR-104A

A variety of human cell lines, were grown, RNA was extracted, and gene expression quantified using Affymetrix hgu133plus2 arrays. Expression of genes was compared to the rate of metabolism of the bioreductive prodrug PR-104A, and genes with expression shown to be statistically significantly correla...

ORGANISM(S): Homo sapiens

2009-08-25 | E-TABM-767 | biostudies-arrayexpress

Panus rudis PR-1116 ss-1

Panus rudis PR-1116 ss-1 transcriptome

PRJNA373024 | ENA

Marasmius fiardii PR-910

Marasmius fiardii PR-910

PRJNA262380 | ENA

Staphylococcus aureus strain:MRSA-PR

Staphylococcus aureus strain:MRSA-PR Genome sequencing

PRJNA1469849 | ENA

Gymnopilus chrysopellus PR-1187

Gymnopilus chrysopellus PR-1187 Transcriptome or Gene expression

PRJNA250472 | ENA

Marasmius fiardii PR-910

Marasmius fiardii PR-910 Genome sequencing and assembly

PRJNA200608 | ENA

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OmicsDI Databases

PRIDE
PeptideAtlas
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Physiome Model Repository

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EVA
ENA
LINCS
PAXDB
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