Prep - OmicsDI

Show results for

Transcriptomics (6130)
Genomics (4961)
Unknown (2423)
Proteomics (353)
Metabolomics (33)
Other (13)
Clinical (11)
Genomic (5)
Methylation profiling (4)

Organisms

Homo sapiens (2546)
Mus musculus (2279)
Drosophila melanogaster (430)
Arabidopsis thaliana (305)
Caenorhabditis elegans (205)
Saccharomyces cerevisiae (190)
Rattus norvegicus (177)
Danio rerio (98)
Sus scrofa (85)
Gallus gallus (46)
Schizosaccharomyces pombe (42)
Bos taurus (38)
Oryza sativa Japonica Group (31)
Escherichia coli (28)
Ovis aries (25)
Zea mays (23)
Candida albicans (22)
Staphylococcus aureus (20)
Escherichia coli str. K-12 substr. MG1655 (18)
Mycobacterium tuberculosis (17)
Oryza sativa (15)
Salmo salar (14)
synthetic construct (13)
Canis lupus familiaris (13)
Triticum aestivum (12)
Equus caballus (12)
Macaca mulatta (11)
Glycine max (11)
Pseudomonas aeruginosa (11)
Hordeum vulgare (10)

Organisms

Homo sapiens (858)
Mus musculus (762)
Arabidopsis thaliana (81)
Danio rerio (56)
Drosophila melanogaster (52)
Rattus norvegicus (45)
Bos taurus (39)
Caenorhabditis elegans (23)
Saccharomyces cerevisiae (19)
Sus scrofa (18)
Equus caballus (10)
Gallus gallus (10)
Synechococcus elongatus PCC 7942 = FACHB-805 (8)
Oryza sativa (7)
pig gut metagenome (6)
Severe acute respiratory syndrome coronavirus 2 (6)
Solanum lycopersicum (6)
Escherichia coli str. K-12 substr. MG1655 (4)
Mycolicibacterium smegmatis MC2 155 (4)
Zea mays (4)
Plasmodium falciparum (4)
Populus ussuriensis (3)
Human immunodeficiency virus 1 (3)
Ovis aries (3)
Canis lupus familiaris (3)
Bacillus subtilis (3)
Bombyx mori (3)
Escherichia coli (3)
Vitis vinifera (3)
Oryza sativa Japonica Group (3)

Repository

biostudies-arrayexpress (7073)
ENA (3282)
geo (560)
pride (316)
EGA (113)
NODE (81)
MetaboLights (28)
MassIVE (21)
jPOST (9)
dbGaP (5)
iProX (3)
MetabolomicsWorkbench (3)
GNPS (2)
LINCS (2)
PAXDB (2)
GPMDB (1)

Tissue

Liver (18)
Lung (14)
Cell line (10)
Human embryonal kidney cell (9)
Prostate (9)
Feces (5)
Colon (5)
Skeletal muscle (5)
Embryo (4)
Cultured cells (3)
Blood (2)
Bone marrow (2)
Breast (2)
Intervertebral disc (2)
Marrow (2)
Prefrontal Cortex (2)
Cartilage (1)
Esophagus (1)
Fetal liver (1)
HESC cell (1)
Large intestine (1)
Muscle (1)
PBMC (1)
Pancreas (1)
Pancreas cancer cell line (1)
Prostate-lung (1)
Small intestine (1)
Umbilical cord blood (1)
Whole body (1)
Yolk sac (1)

Disease

Normal (8)
Colorectal Neoplasms (6)
Tuberculosis (3)
Neuroblastoma (2)
Colorectal cancer (2)
Retinoblastoma (1)
XCGD (1)
Pheochromocytoma (1)
HPV positive (1)
4T1 tumor-bearing (1)
Hepatocellular carcinoma-non tumorous region (1)
Not applicable (1)
Uncomplicated gonorrhoea (1)
Severe acute respiratory syndrome (1)
Infected (1)
Familial combined hyperlipidemia (1)
Squamous cell carcinoma (1)
IBDV infected (1)
Normal (1)
Barrett's esophagus (1)
Infected with Leishmania amazonensis (1)
Cancer (1)
Chronic active EB virus infection (1)
Extranodal NK/T cell lymphoma, nasal type (1)
Ulcerative Colitis (1)
Digestive System Diseases (1)
Colon cancer (1)
Colorectal cancer (1)
Adenoma (1)
Not Available (1)

Technology Type

Mass Spectrometry (319)
Shotgun proteomics (142)
Bottom-up proteomics (85)
Data-dependent acquisition (50)
Data-independent acquisition (30)
Affinity purification coupled with mass spectrometry proteomics (22)
SWATH MS (22)
Mass spectrometry (19)
Top-down proteomics (10)
Gel-based experiment (9)
Mass spectrometry assay (6)
SRM/MRM (4)
NMR spectroscopy (3)
ESI (3)
DNA sequencing (2)
RNA-seq (2)
Affinity proteomics (2)
All-ion fragmentation (2)
DiaPASEF (2)
HDMSE (2)
Immunopeptidomics (2)
Mass spectrometry imaging (2)
Illumina MiSeq, Illumina HiSeq 2500, ILLUMINA (1)
Proteogenomics (1)

Instrument Platform

Illumina NovaSeq 6000 (584)
NextSeq 500 (502)
Illumina HiSeq 2500 (376)
Illumina HiSeq 2000 (326)
Illumina HiSeq 4000 (265)
NextSeq 550 (112)
Illumina MiSeq (89)
NextSeq 2000 (72)
Illumina NovaSeq X (63)
Illumina HiSeq 1500 (61)
HiSeq X Ten (56)
Illumina HiSeq 3000 (36)
Illumina Genome Analyzer IIx (25)
Illumina Genome Analyzer II (19)
Illumina HiSeq 1000 (19)
DNBSEQ-G400 (14)
Agilent 2100 Bioanalyzer (11)
DNBSEQ-T7 (11)
Element AVITI (10)
None (10)
BGISEQ-500 (9)
NA (8)
NextSeq 1000 (7)
Illumina HiSeq X (6)
N/A (6)
Ribo-Zero Gold (Illumina) (5)
TruSeq RNA Sample Prep Kit (5)
- (5)
TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero Gold (Illumina) (4)
None (4)

Publication Date

2015 (982)
2013 (879)
2014 (814)
2016 (772)
2021 (430)
2023 (395)
2025 (391)
2022 (377)
2020 (370)
2026 (367)
2012 (366)
2010 (324)
2019 (291)
2024 (289)
2011 (286)
2018 (222)
2017 (174)
2008 (129)
2009 (75)
2007 (41)
2006 (19)
2004 (11)
2005 (6)
2003 (3)
2002 (1)

UNIPROT ID/AC

246196.MSMEI_0054 (2)
246196.MSMEI_0075 (2)
246196.MSMEI_0389 (2)
246196.MSMEI_0784 (2)
246196.MSMEI_0974 (2)
246196.MSMEI_1000 (2)
246196.MSMEI_1011 (2)
246196.MSMEI_1026 (2)
246196.MSMEI_1198 (2)
246196.MSMEI_1222 (2)
246196.MSMEI_1367 (2)
246196.MSMEI_1680 (2)
246196.MSMEI_1690 (2)
246196.MSMEI_1744 (2)
246196.MSMEI_1958 (2)
246196.MSMEI_2108 (2)
246196.MSMEI_2225 (2)
246196.MSMEI_2227 (2)
246196.MSMEI_2228 (2)
246196.MSMEI_2231 (2)
246196.MSMEI_2232 (2)
246196.MSMEI_2233 (2)
246196.MSMEI_2235 (2)
246196.MSMEI_2236 (2)
246196.MSMEI_2237 (2)
246196.MSMEI_2238 (2)
246196.MSMEI_2239 (2)
246196.MSMEI_2241 (2)
246196.MSMEI_2244 (2)
246196.MSMEI_2248 (2)

CHEBI ID

CHEBI:17750 (9)
CHEBI:16335 (8)
CHEBI:17895 (8)
CHEBI:17596 (8)
CHEBI:30769 (8)
CHEBI:16708 (7)
CHEBI:17115 (7)
CHEBI:17203 (7)
CHEBI:16704 (7)
CHEBI:30915 (7)
CHEBI:15603 (7)
CHEBI:16643 (7)
CHEBI:17295 (7)
CHEBI:17368 (7)
CHEBI:16695 (6)
CHEBI:16750 (6)
CHEBI:17748 (6)
CHEBI:15741 (6)
CHEBI:17509 (6)
CHEBI:7916 (6)
CHEBI:18050 (6)
CHEBI:15971 (6)
CHEBI:29016 (6)
CHEBI:16015 (6)
CHEBI:18012 (6)
CHEBI:16027 (6)
CHEBI:16414 (6)
CHEBI:17191 (6)
CHEBI:15354 (6)
CHEBI:16680 (5)

Metabolite Name

L-Proline (6)
Adenosine (6)
L-Glutamine (5)
L-Tyrosine (5)
Glycine (4)
L-Lysine (4)
L-Histidine (4)
Adenine (4)
L-Valine (4)
L-Isoleucine (4)
L-Leucine (4)
L-Methionine (4)
L-Phenylalanine (4)
Hypoxanthine (4)
L-Alanine (3)
Betaine (3)
1-Aminocyclopropanecarboxylic acid (3)
ADP (3)
NAD (3)
Ornithine (3)
L-Arginine (3)
Succinic acid (3)
L-Asparagine (3)
Deoxyadenosine (3)
Choline (3)
Spermidine (3)
Cytosine (3)
Sarcosine (3)
Raffinose (3)
Porphobilinogen (3)

First Public Date

2024 (444)
2025 (411)
2023 (348)
2026 (320)
2021 (318)
2020 (292)
2022 (273)
2019 (228)
2018 (155)
2013 (154)
2017 (138)
2014 (77)
2016 (70)
2015 (52)
2011 (1)
2010 (1)

Classification

bacteria (155)
protozoa (15)
viruses (14)
fungi (11)

Modification

Not available (2)

Study status

Completed (6)
Not provided (2)
Terminated (1)
Not yet recruiting (1)
Recruiting (1)

Study type

RNA-seq of coding RNA (3006)
Transcription profiling by array (1213)
ChIP-seq (1204)
RNA-seq of non coding RNA (298)
RNA-seq of total RNA (173)
Methylation profiling by high throughput sequencing (158)
Other (121)
Cell line - High-throughput sequencing (100)
DNA-seq (92)
Animal - High-throughput sequencing (72)
Comparative genomic hybridization by array (58)
High-throughput sequencing (52)
RNA-seq of coding RNA from single cells (52)
Genotyping by high throughput sequencing (44)
Unknown experiment type (39)
MicroRNA profiling by high throughput sequencing (34)
Human - High-throughput sequencing (31)
ChIP-chip by tiling array (29)
Genotyping by array (27)
CUT&RUN (27)
Plant - High-throughput sequencing (26)
RIP-seq (24)
Transcription profiling by tiling array (20)
Methylation profiling by array (20)
Bisulfite-seq (17)
ATAC-seq (16)
Hi-C (16)
MNase-seq (8)
MeDIP-seq (8)
Transcription profiling by RT-PCR (8)

Release Date

2015 (1012)
2013 (889)
2014 (837)
2016 (821)
2023 (662)
2022 (630)
2025 (629)
2021 (561)
2024 (490)
2020 (480)
2019 (379)
2012 (375)
2010 (329)
2026 (312)
2018 (303)
2011 (292)
2017 (203)
2008 (133)
2009 (82)
2007 (40)
2006 (19)
2004 (9)
2005 (4)
2003 (2)
2002 (2)

Lab affiliation

Dept. Oncology-Pathology, Science for Life Laboratory, Karolinska Institutet, Sweden (4)
Lomonosov Moscow State University (4)
Proteomics facility, Central Science Laboratory, University of Tasmania (4)
BBE, Caltech (3)
BBE, Tsui-Fen Chou's lab, Caltech, USA (3)
Departamento de Microbiología II, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid, Spain (3)
Harvard Medical School Cell Biology Department (3)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchâtel, Switzerland (3)
Bioplatforms Australia (2)
Cell Signalling & Immunology, University of Dundee (2)
Centre for Gene Regulation and Expression, Sir James Black Centre, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH. UK. (2)
Centre for Regenerative Medicine “Stefano Ferrari”, University of Modena and Reggio Emilia, Modena, Italy (2)
David A. Sela Associate Professor, Dept. of Food Science Adjunct Associate Professor, Dept. of Microbiology University of Massachusetts Amherst Adjunct Associate Professor, Dept. of Microbiology & Physiological Systems University of Massachusetts Medical School selalab.org 413.545.1010 (2)
Department of Genome Sciences, University of Washington, Seattle, WA 98195 USA (2)
Department of Nutrition, Center for Proteomics and Bioinformatics, School of Medicine, Case Western Reserve University, Cleveland, Ohio, USA; Case Center for Synchrotron Biosciences, Brookhaven National Laboratory, Upton, New York, USA (2)
Department of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory, Stockholm, Sweden (2)
European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany. (2)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (2)
Institute of Parasitology, Biology Center, Czech Academy of Sciences, Branišovská 31, 370 05 České Budějovice, CZECH REPUBLIC (2)
Johns Hopkins University, Chemistry Department, Fried Lab, USA (2)
LMU Munich, Department of Chemistry (2)
Laboratory of Peroxisome Biology and Intracellular Communication, Department of Cellular and Molecular Medicine, Katholieke Universiteit Leuven, 3000 Leuven, Belgium (2)
Mass Spectrometry Facility, Max Perutz Labs, University of Vienna, Vienna BioCenter, Dr. Bohr-Gasse 9, 1030 Vienna, Austria (2)
Moffitt Cancer Center (2)
NICM HRI, Western Sydney University, NSW, Australia (2)
Nestlé Research – Nestlé Institute of Food Safety & Analytical Sciences (2)
Promega (Staff Scientist) and IDOR (Professor) (2)
Research Group Leader, Friedrich Miescher Institute for Biomedical Research (2)
School of biological Sciences, Nanyang Technological University, Singapore 637551 (2)
University of Arizona College of Medicine, Department of Medicine, Division of Endocrinology (2)

Location

United States (3)
Australia (3)
Taiwan (1)
Denmark (1)
Poland (1)
Germany (1)
Czechia (1)
Italy (1)
Spain (1)
Canada (1)
Netherlands (1)
France (1)

Keyword

Colonoscopy (2)
Transanal endoscopic surgery (1)
TAMIS (1)
Oral mechanical bowel preparation (1)
Fleet enema (1)
Ottawa bowel prep score (1)
Rectal neoplasm (1)
Eziclen (1)
Klean-Prep (1)
Miralax with gatorade and dulcolax (1)
Movi pre (1)
Patient satisfaction and efficacy (1)
Colon Cancer Screening (1)
Low fiber diet (1)
Colonoscopy preparation (1)
African Americans (1)
Telemedicine (1)
Bowel prep (1)
Bowel cleansing (1)
TEM (1)
Bowel preparation (1)
Circulating tumor cells (1)
CTCs (1)
Automated (1)
Safety (1)
Early detection (1)
Efficacy (1)
CRC (1)

Previous page
1 / 1394
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 1394
Next page

Sort by:

Relevance

Page size

miRNA Microarray Profiling with Three Different Total RNA Prep Methods

We performed miRNA microarray profiling on samples prepared from two different cell lines by three widely-used total RNA sample prep methods. miRNA microarrays were manufactured by Agilent Technologies (Santa Clara, CA), and contain 20-40 features targeting each of 470 human miRNAs (Agilent design...

ORGANISM(S): Homo sapiens

2008-08-19 | E-GEOD-11840 | biostudies-arrayexpress

ChIP-seq for Prep on whole zebrafish embryos at 3.5 and 12hpf

Prep ChIP-seq on whole zebrafish embryos at 3.5 and 12 hours post fertilisation (hpf)

ORGANISM(S): Danio rerio

2018-06-25 | E-MTAB-5967 | biostudies-arrayexpress

PrEP-microbiota

Human gut microbiota from pre and post-PrEP specimens

PRJEB29018 | ENA

miRNA Microarray Profiling: multiple tissues and cell lines

This SuperSeries is composed of the following subset Series: GSE11806: miRNA Microarray Profiling of Nine Different Normal Human Tissues GSE11840: miRNA Microarray Profiling with Three Different Total RNA Prep Methods Refer to individual Series

ORGANISM(S): Homo sapiens

2008-08-19 | E-GEOD-11879 | biostudies-arrayexpress

16S-23S-PrEP-microbiome

Full-length 16S-23S rRNA gene sequences from pre and post PrEP specimens

PRJEB29019 | ENA

PrEP-001 prophylactic effect against rhinovirus and influenza virus - RESULTS of 2 randomized trials.

Not available

S-EPMC7126195 | biostudies-literature

Understanding pre-exposure prophylaxis (PrEP) regimen use: Switching and discontinuing daily and event-driven PrEP among men who have sex with men.

Not available

S-EPMC7711206 | biostudies-literature

How PrEP delivery was integrated into public ART clinics in central Uganda: A qualitative analysis of implementation processes.