Protein kinases and phosphatases

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Unknown (817)
Proteomics (164)
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Models (45)
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cellular organisms (6)
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unidentified (1)
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Organisms

Homo sapiens (10)
Danio rerio (7)
Arabidopsis thaliana (2)
Apis cerana cerana (1)
Fagopyrum tataricum (1)
Papio anubis (1)
Saccharum officinarum (1)
Zea mays (1)
Solanum lycopersicum (1)
Sus scrofa (1)
Caenorhabditis elegans (1)
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Repository

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Tissue

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Presumptive retinal pigmented epithelium (1)
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Head (1)
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Disease

Normal (3)
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Brain cancer (1)
Disease free (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (99)
Shotgun proteomics (61)
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Gel-based experiment (7)
HDMSE (3)
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Mass spectrometry (2)
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Instrument Platform

Q Exactive (8)
Q Exactive Plus (8)
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LTQ Orbitrap Velos (3)
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2005 (39)
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2019 (13)
2013 (11)
2010 (11)
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2009 (8)
2007 (8)
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2008 (7)
2015 (6)
2012 (4)
2011 (3)
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2002 (2)
2003 (1)
2001 (1)

UNIPROT ID/AC

P61225 (4)
P27361 (4)
P51452 (4)
Q02750 (4)
P04049 (4)
Q99PS2 (2)
Q03114 (2)
Q9UD71 (2)
Q9Y243 (1)
Q9QY78 (1)
A9LRT4 (1)
P21581 (1)
Q4VSI4 (1)
Q62671 (1)
Q99MA1 (1)
Q09137 (1)
Q63699 (1)
Q06226 (1)
O09139 (1)
P07895 (1)
O54857 (1)
P19357 (1)
O60343 (1)
O88763 (1)
P20417 (1)
P15127 (1)
P01322 (1)
G3V7R4 (1)
P42346 (1)
P35570 (1)

ENSEMBL ID

ENSMUSP00000106991 (1)
ENSMUSP00000141542 (1)
ENSMUSG00000090272 (1)
ENSMUSG00000096833 (1)
ENSMUSG00000021039 (1)
ENSMUSP00000141097 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:16027 (4)
CHEBI:17489 (3)
CHEBI:16856 (3)
CHEBI:17858 (3)
CHEBI:29108 (2)
CHEBI:15996 (2)
CHEBI:17552 (2)
CHEBI:17345 (2)
CHEBI:22660 (2)
CHEBI:18012 (2)
CHEBI:30915 (2)
CHEBI:6650 (2)
CHEBI:28300 (2)
CHEBI:15741 (2)
CHEBI:25017 (2)
CHEBI:16335 (2)
CHEBI:37328 (1)
CHEBI:60169 (1)
CHEBI:4705 (1)
CHEBI:33697 (1)
CHEBI:18348 (1)
CHEBI:16618 (1)
CHEBI:16152 (1)
CHEBI:26523 (1)
CHEBI:16651 (1)
CHEBI:73073 (1)
CHEBI:85591 (1)
CHEBI:70819 (1)
CHEBI:17672 (1)
CHEBI:18021 (1)

Metabolite Name

GTP (2)
GDP (2)
Fumarate (2)
Succinate (2)
Glutamine (2)
Leucine (2)
Glutamate (2)
Arginine (2)
Adenosine (2)
Malate (2)
Lactate (2)
Aspartate (2)
AMP (2)
Alanine (2)
Uridine monophosphate (1)
Cystenylglycine (1)
Hydroxycinnamicacid (1)
N-acetyl-serine (1)
Guanosine monophosphate (1)
Cytidine monophosphate (1)
S-Adenosyl-Methionine (1)
S-Adenosyl-Homocysteine (1)
GTP?? (1)
Glutathione, reduced (1)
Carbamoylphosphate (1)
2-phosphoglycolate (1)
HMG-CoA (1)
DHAP (1)
CGMP (1)
Myristoylcarnitine (1)

First Public Date

2014 (12)
2025 (8)
2024 (5)
2020 (3)
2023 (1)
2022 (1)
2021 (1)
2019 (1)
2017 (1)
2015 (1)
2010 (1)

Modelling Approach

Ordinary differential equation model (45)

Lab affiliation

Institute of Organic Chemistry and Biochemistry of the CAS (3)
Department of Biochemistry, University of Oxford (3)
Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology, University of Freiburg, 79104 Freiburg, Germany (3)
chemistry biochemistry UCSD (2)
Department of Biochemsitry, University of Oxford (2)
Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China (2)
Department of Infectious Diseases, University Hospital Zurich, University of Zurich, Zurich, Switzerland (2)
Functional Genomics Laboratory, Carlos Chagas Institute, Fiocruz, Curitiba, Parana, Brazil (2)
University of Edinburgh (2)
Harvard Medical School, Boston, MA, USA (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) TUM School of Life Sciences Technical University Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising (1)
Chief, Epithelial Signaling and Transport Section NIH, NIDCR, Building 10, Room 1N-112, Bethesda MD 20892. U.S.A. (1)
Thoracic and GI Malignancies Branch, CCR, NCI, NIH, Bethesda, MD (1)
UMR 1347 Agroécologie Agrosup Dijon / INRA / Université de Bourgogne / Dijon / France (1)
Department of Molecular and Cellular Biology, Medical Institute of Bioregulation, Kyushu University (1)
4The Novo Nordisk Foundation Center for Protein Research, Clinical Proteomics, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark. (1)
Cell Cycle Group Cancer Epigenetics and Biology Program (PEBC) Bellvitge Isntitute of Biomedical Research (IDIBELL) Hospital Duran i Reynals Avinguda de la Gran Via de l'Hospitalet, 199-203 08908 - L'Hospitalet de Llobregat (1)
Department of Molecular and Cellular Biology (MOCEL), University of Geneva, (Previously) Department of Fundamental Microbiology (DMF), University of Lausanne (1)
Signalling in Apicomplexan Parasites Laboratory, The Francis Crick Institute, London NW1 1AT, UK (1)
University of Melbourne, Florey Institute (1)
CRCHUM-Centre Hospitalier de l'Université de Montréal, Montréal, QC H2X 0A9, Canada. (1)
1 Department of Molecular Neurosciences, Center for Brain Research, Medical University of Vienna, Spitalgasse 4, A-1090 Vienna, Austria; 2 Department of Neuroscience, Karolinska Institutet, Retzius väg 8, SE-17177 Stockholm, Sweden (1)
Centre of New Technologies, University of Warsaw, 02-097, Warsaw, Poland (1)
Professor Gopal Sapkota MRC Investigator MRC Protein Phosphorylation & Ubiquitylation Unit Sir James Black Centre School of Life Sciences University of Dundee Dundee DD1 5EH  United Kingdom   (1)
Proteomics and Metabolomics Facility, Nebraska Center for Biotechnology (1)
IU School of Medicine, Department of Medicine, Division of Nephrology (1)
Institut Pasteur, Université de Paris, CNRS USR2000, Proteomics Platform, Mass Spectrometry for Biology Unit, 75015 Paris, France (1)
State Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, China (1)
Biognosys AG, Schlieren, Switzerland (Dr. Lukas Reiter, lukas.reiter@biognosys.com) Institute of Molecular System Biology, ETH Zurich, Zurich, Switzerland (Prof. Dr. Paola Picotti, picotti@imsb.biol.ethz.ch) (1)
Genetics Department, Harvard Medical School (1)

IsPrivate

False (45)

Modification

4x(2)H labeled dimethylated L-lysine (2)
71.037114 (1)
15.994915 (1)
2x(15)N labeled L-lysine (1)
57.021464 (1)

Study type

Transcription profiling by array (49)
RNA-seq of coding RNA (7)
RNA-seq of non coding RNA (3)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
ChIP-seq (1)
Proteomic profiling by array (1)

Release Date

2021 (58)
2017 (57)
2013 (56)
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2014 (49)
2010 (46)
2020 (43)
2024 (40)
2012 (37)
2011 (37)
2008 (31)
2015 (30)
2009 (30)
2025 (30)
2007 (18)
2006 (17)
2005 (10)
2026 (8)
2001 (6)
2003 (5)
2002 (5)
2004 (4)
1999 (2)
1998 (2)
1997 (1)

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Quantitative chemical proteomic profiling of phosphoprotein phosphatases

We have developed a chemical proteomic strategy for the systematic interrogation of endogenous phosphoprotein phosphatases (PPP) and their interacting proteins, including regulatory and scaffolding subunits, and substrates (the 'PPPome'). PPPs are captured using an immobilized non-selective PPP inhi...

ORGANISM(S): Neurospora Crassa (ncbitaxon:5141) Candida Albicans (ncbitaxon:5476) Saccharomyces Cerevisiae (ncbitaxon:4932) Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090) Schizosaccharomyces Pombe (ncbitaxon:4896)

2017-07-07 | MSV000081226 | MassIVE

Transcription profiling of Arabidopsis thaliana wild type and knock-out mutants of subclass III SnRK2 protein kinases after 6h of treatment with dehydration stress.

Effect of single or double knock-out mutation of subclass III SnRK2 protein kinases in Arabidopsis after 6 h of treatment with dehydration stress.

ORGANISM(S): Arabidopsis thaliana

2009-12-17 | E-MEXP-2355 | biostudies-arrayexpress

Regulated protein kinases and phosphatases in cell cycle decisions.

Not available

S-EPMC3769698 | biostudies-literature

Protein Kinases and Phosphatases of the Plastid and Their Potential Role in Starch Metabolism.

Not available

S-EPMC6056723 | biostudies-literature

Transcription profiling of Saccharomyces cerevisiae kinase and phosphatase knockouts

All non-essential protein kinases and phosphatases knockouts have been investigated by expression profiling. To investigate redundancy, double mutants are profiled that show a reduced growth according to synthetic genetic interaction data.

ORGANISM(S): Saccharomyces cerevisiae

2010-12-11 | E-TABM-907 | biostudies-arrayexpress

Systematic inference of indirect transcriptional regulation by protein kinases and phosphatases.

Not available

S-EPMC9255832 | biostudies-literature

A Critical Look at the Crystal Structures of cAMP-Dependent Protein Kinases.

Not available

S-EPMC12478544 | biostudies-literature

Structural Insights into Protein Regulation by Phosphorylation and Substrate Recognition of Protein Kinases/Phosphatases.

Not available

S-EPMC8467178 | biostudies-literature

Phosphoproteomic investigation of targets of protein phosphatases in EGFR signaling.