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Unknown
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Genomics
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Transcriptomics
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Proteomics
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Other
(16)
Models
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Organisms
Homo sapiens
(20)
Escherichia coli
(12)
Caulobacter vibrioides
(11)
Mus musculus
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Arabidopsis thaliana
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Escherichia coli str. K-12 substr. MG1655
(6)
Bradyrhizobium japonicum
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Sinorhizobium meliloti
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environmental samples
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Macroptilium atropurpureum
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Acetobacter aceti NBRC 14818
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Calyptogena magnifica symbiont
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Organisms
soil metagenome
(28)
Homo sapiens
(14)
marine metagenome
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Caulobacter vibrioides
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human gut metagenome
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uncultured bacterium
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sediment metagenome
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freshwater metagenome
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Caulobacter vibrioides NA1000
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mine drainage metagenome
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insect metagenome
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Repository
ENA
(1689)
biostudies-arrayexpress
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geo
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pride
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Mass Spectrometry
(49)
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(28)
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(13)
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MSE
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Instrument Platform
Liquid Chromatography MS - positive - reverse phase
(16)
Liquid Chromatography MS - negative - reverse phase
(16)
Liquid Chromatography MS - negative - reverse-phase
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Illumina HiSeq 2000
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Agilent 6530 Quadrupole Time-of-Flight LC/MS
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RP-HPLC-ESI-qQ-ToF
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Publication Date
2026
(37)
2025
(30)
2024
(28)
2010
(25)
2022
(24)
2012
(19)
2023
(18)
2014
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2013
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2021
(17)
2020
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2011
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2018
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UNIPROT ID/AC
A0A0V2FFD6
(2)
A0A0V2FFH3
(2)
P0CAW2
(2)
P0CAW8
(2)
P0CAU4
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Q45976
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(1)
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(1)
Q9AA62
(1)
A0A0H3C8Q4
(1)
A0A0H3C5M8
(1)
A0A0H3C966
(1)
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(1)
P30279
(1)
Q8WWL7
(1)
O96020
(1)
P46527
(1)
P24941
(1)
P14635
(1)
P06493
(1)
Q12834
(1)
P06400
(1)
P20248
(1)
P24864
(1)
P24385
(1)
P12830
(1)
CHEBI ID
CHEBI:15756
(10)
CHEBI:16359
(9)
CHEBI:52022
(8)
CHEBI:16755
(8)
CHEBI:16525
(8)
CHEBI:17754
(8)
CHEBI:32816
(8)
CHEBI:17596
(8)
CHEBI:28865
(8)
CHEBI:9347
(7)
CHEBI:46961
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CHEBI:16325
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CHEBI:16708
(7)
CHEBI:16750
(7)
CHEBI:71466
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CHEBI:30746
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CHEBI:17154
(7)
CHEBI:7916
(7)
CHEBI:15891
(7)
CHEBI:28834
(7)
CHEBI:80774
(7)
CHEBI:15971
(7)
CHEBI:16015
(7)
CHEBI:17368
(7)
CHEBI:18089
(7)
CHEBI:17687
(7)
CHEBI:28997
(6)
CHEBI:17992
(6)
CHEBI:17172
(6)
Metabolite Name
Taurine
(12)
Riboflavin
(10)
Choline
(9)
Thymine
(8)
Piperidine
(8)
L-Histidine
(8)
Deoxyinosine
(8)
Xanthine
(8)
Creatine
(8)
L-Valine
(8)
L-Phenylalanine
(8)
Hypoxanthine
(8)
Phytosphingosine
(7)
Biliverdin
(7)
Oxypurinol
(7)
Suberic acid
(7)
Azelaic acid
(7)
Guanosine
(7)
Thymidine
(7)
Biotin
(7)
Stearamide
(7)
L-Tyrosine
(7)
4-(2-Aminophenyl)-2,4-dioxobutanoic acid
(6)
L-Pyridosine
(6)
Oryzalide B
(6)
5-(2'-Carboxyethyl)-4,6-Dihydroxypicolinate
(6)
3-Methyldioxyindole
(6)
Riesling acetal
(6)
3-ketosphinganine
(6)
Linoleamide
(6)
First Public Date
2024
(205)
2025
(202)
2023
(148)
2020
(141)
2013
(128)
2021
(115)
2019
(114)
2026
(113)
2022
(109)
2017
(96)
2018
(92)
2016
(73)
2014
(67)
2015
(65)
2012
(15)
2011
(4)
2010
(2)
Modelling Approach
Ordinary differential equation model
(3)
Lab affiliation
North Carolina State University
(3)
University of Washington Department of Genome Sciences
(2)
1 School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia. 2 Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010, Australia
(1)
1UNSW Water Research Centre, School of Civil and Environmental Engineering, University of New South Wales, Sydney, NSW 2052, Australia
(1)
Assistant Professor Department of Molecular and Experimental Medicine TSRI - California Campus USA
(1)
Biogroup - Group of Environmental Biotechnology Department of Chemical Engineering . Universidade de Santiago de Compostela
(1)
CSIRO Agriculture and Food, 306 Carmody Rd, St Lucia QLD 4067, Australia
(1)
Department Molekulare Systembiologie Helmholtz-Zentrum für Umweltforschung GmbH - UFZ Permoserstraße 15 04318 Leipzig
(1)
Department of Biochemistry and Synthetic Metabolism, Max Planck Institute for terrestrial Microbiology, Marburg, Germany
(1)
Department of Biology, AG Stengel, University of Konstanz,Germany
(1)
Department of Medical Biochemistry and Cell Biology University of Gothenburg Sweden
(1)
Depatment Biology I
(1)
Faculty of Biology - Microbiology, University of Freiburg,79104 Freiburg, Germany
(1)
Faculty of Life Sciences,Bar-Ilan University, Israel
(1)
Faculty of Medicine, University of Ottawa
(1)
Fundacion Instituto de Investigaciones Sanitarias de Santiago de Compostela
(1)
Group Leader, Department of Molecular Microbiology
(1)
Helmholtz Institute for RNA-based Infection Research (HIRI), Helmholtz Centre for Infection Research (HZI), D-97080 Würzburg, Germany RNA Biology Group, Institute for Molecular Infection Biology (IMIB), University of Würzburg, D-97080 Würzburg, Germany
(1)
IIM-CSIC
(1)
Institut of Biochemistry and Molecular Biology, University of Southern Denmark
(1)
LMGM, Université de Toulouse, CNRS, UPS, CBI, Toulouse, France; TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France
(1)
Laboratory of Bacteriology, Hellenic Pasteur Institute, Athens, Greece
(1)
Laboratory of Molecular Biology of Bacterial Pathogens Cell and Molecular Microbiology Division Institute of Microbiology, v.v.i. The Czech Academy of Sciences
(1)
Max Planck Insitute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany
(1)
Max Planck Institute for terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany
(1)
Molecular Biology and Biotechnology, University of Sheffield, UK
(1)
Newcastle University Biosciences Institute Cookson Building Newcastle University NE2 4HH United Kingdom
(1)
Newcastle University Biosciences Institute Cookson Building Newcastle University NE2 4HH United Kingdom
(1)
Oceanography, University of Washington, USA
(1)
Onstott Lab, Department of Geosciences, Princeton University
(1)
Tags
pathogen
(49)
pathogen:bacterium
(48)
wastewater
(4)
xref:PubMed:41895287
(3)
xref:PubMed:36480504
(2)
xref:PubMed:29040502
(2)
xref:PubMed:38920383
(2)
xref:PubMed:38260642
(2)
xref:PubMed:40387328
(2)
xref:PubMed:33113346
(2)
xref:PubMed:21914891
(1)
xref:PubMed:33737919
(1)
xref:PubMed:26505308
(1)
xref:PubMed:27296968
(1)
xref:PubMed:34967415
(1)
xref:PubMed:29244728
(1)
xref:PubMed:23105063
(1)
xref:PubMed:29163474
(1)
xref:PubMed:30194317
(1)
xref:PubMed:38531971
(1)
xref:PubMed:24949739
(1)
xref:PubMed:28919886
(1)
xref:PubMed:19691500
(1)
xref:PubMed:39411446
(1)
xref:PubMed:23941329
(1)
xref:PubMed:21914892
(1)
xref:PubMed:17922758
(1)
xref:PubMed:39064618
(1)
xref:PubMed:32987006
(1)
xref:PubMed:22689232
(1)
IsPrivate
False
(4)
Model Flag
Non Kinetic
(1)
Classification
bacteria
(48)
viruses
(1)
Modification
Not available
(1)
Study type
Transcription profiling by array
(67)
RNA-seq of coding RNA
(15)
Other
(8)
Unknown experiment type
(6)
Comparative genomic hybridization by array
(5)
ChIP-chip by tiling array
(4)
High-throughput sequencing
(2)
ChIP-seq
(2)
RNA-seq of non coding RNA
(2)
DNA-seq
(1)
Genotyping by high throughput sequencing
(1)
Methylation profiling by high throughput sequencing
(1)
Release Date
2022
(1089)
2023
(918)
2021
(901)
2020
(722)
2024
(719)
2025
(642)
2019
(551)
2018
(498)
2017
(428)
2016
(359)
2015
(307)
2014
(238)
2013
(202)
2012
(180)
2011
(120)
2010
(91)
2005
(73)
2007
(67)
2004
(67)
2003
(65)
2002
(64)
2026
(60)
2009
(59)
2006
(57)
2008
(54)
2000
(51)
2001
(46)
1999
(38)
1998
(28)
1995
(1)
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uncultured Pseudomonadota bacterium strain:Proteobacteria | isolate:sputum
uncultured Pseudomonadota bacterium strain:Proteobacteria | isolate:sputum Targeted Locus (Loci)
PRJNA383710
|
ENA
Cite
Proteobacteria
Proteobacteria Genome sequencing and assembly
PRJNA1260950
|
ENA
Cite
Proteobacteria phage P14
Proteobacteria phage P14 Genome sequencing
PRJNA329426
|
ENA
Cite
Pseudomonas aeruginosa strain:Proteobacteria | isolate:RIVM-EMC2982_1 | breed:Gamma Proteobacteria | cultivar:Pseudomonas
Pseudomonas aeruginosa strain:Proteobacteria | isolate:RIVM-EMC2982_1 | breed:Gamma Proteobacteria | cultivar:Pseudomonas Genome sequencing and assembly
PRJNA339235
|
ENA
Cite
Proteobacteria bacterium 005FR1
Proteobacteria bacterium 005FR1 Genome sequencing and assembly
PRJNA573928
|
ENA
Cite
Proteobacteria bacterium CAG:139
Proteobacteria bacterium CAG:139 overview
PRJNA207166
|
ENA
Cite
Proteobacteria bacterium CAG:495
Proteobacteria bacterium CAG:495 overview
PRJNA207270
|
ENA
Cite
Proteobacteria
Proteobacteria Raw sequence reads
PRJNA326889
|
ENA
Cite
Proteobacteria,Anthophyta,Ascomycota
Proteobacteria,Anthophyta,Ascomycota Raw sequence reads
PRJNA664509
|
ENA
Cite
Proteobacteria bacterium JGI 0000113-E04
Proteobacteria bacterium JGI 0000113-E04
PRJNA177747
|
ENA
Cite
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