Proteogenomics - OmicsDI

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Proteomics (624)
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Organisms

Schizosaccharomyces pombe (380)
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Nostoc sp. PCC 7120 = FACHB-418 (1)
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cellular organisms (1)
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Organisms

Homo sapiens (48)
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Tistlia consotensis USBA 355 (1)
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hypersaline lake metagenome (1)
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Repository

pride (380)
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Tissue

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Disease

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Technology Type

Mass Spectrometry (380)
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MSE (1)
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HDMSE (1)

Instrument Platform

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Publication Date

2015 (101)
2014 (89)
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2018 (27)
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2017 (22)
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2012 (3)
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2005 (1)
2008 (1)
2010 (1)

UNIPROT ID/AC

TBCD4_HUMAN (30)
OXLA_HUMAN (30)
SSU72_HUMAN (30)
ML12A_HUMAN (30)
PP4R2_HUMAN (30)
K2C8_HUMAN (30)
S10A4_HUMAN (30)
HNRLL_HUMAN (30)
DYN2_HUMAN (30)
RIF1_HUMAN (30)
ODP2_HUMAN (30)
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TBA1C_HUMAN (30)
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CSDE1_HUMAN (30)
ITB1_HUMAN (30)
PDXK_HUMAN (30)
RPAP3_HUMAN (30)
ERF3A_HUMAN (30)
GRSF1_HUMAN (30)
G3BP2_HUMAN (30)
PDIA4_HUMAN (30)
DNJA2_HUMAN (30)
DUT_HUMAN (30)
ALDOA_HUMAN (30)
HDGF_HUMAN (30)
CSK22_HUMAN (30)

ENSEMBL ID

ENSG00000170477 (149)
ENSG00000229353 (125)
ENSG00000147251 (102)
ENSG00000204131 (83)
ENSG00000247315 (61)
ENSG00000176092 (35)
ENSG00000214897 (5)

First Public Date

2024 (20)
2023 (13)
2025 (11)
2022 (11)
2019 (10)
2017 (10)
2026 (7)
2014 (7)
2021 (5)
2020 (5)
2018 (5)
2016 (5)
2013 (4)
2015 (1)

Classification

bacteria (2)

Modification

15.994915 (6)
57.021464 (5)
42.010565 (3)
45.029395 (2)
-17.026549 (2)
2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
Not available (2)
27.994915 (1)
6.020129 (1)
10.008269 (1)
-18.010565 (1)
58.005479 (1)
+3amu) (1)

Study type

RNA-seq of coding RNA (7)
RNA-seq of non coding RNA from single cells (1)
Proteomic profiling by mass spectrometer (1)
ChIP-seq (1)
Transcription profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2023 (43)
2021 (36)
2025 (30)
2019 (28)
2024 (27)
2022 (27)
2020 (25)
2018 (20)
2017 (19)
2015 (16)
2016 (15)
2014 (15)
2009 (7)
2013 (6)
2012 (6)
2011 (5)
2010 (3)
2026 (2)
2008 (1)

Lab affiliation

CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (16)
College of Animal Sciences, Zhejiang University, Hangzhou, P. R. China (9)
Li2D (6)
CEA-Marcoule, DSV-Li2D, 30207 Bagnols-sur-Cèze, France (5)
Yazhouwan National Laboratory, Sanya 572024, China (3)
CEA-Marcoule, DSV-iBEB-SBTN-LBSP, 30207 Bagnols-sur-Cèze, France (3)
Institute of Integrative Biology, University of Liverpool (3)
University of Greifswald, Institute for Microbiology, Department for Microbial Proteomics (3)
Director of Women’s Health Research Women’s Service Line Inova Health System (3)
China Pharmaceutical University (3)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (3)
National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, China (2)
EMBL-EBI (2)
Science for Life Laboratory; Department of Oncology Pathology, Karolinska Institute, Stockholm, Sweden (2)
Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), IPHC, Université de Strasbourg, Strasbourg, France. (2)
Proteogenomics laboratory MELISA institute (2)
Lab. Neuro-oncologie en klinische en kanker proteomics Department of Neurology Erasmus MC (2)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
Quantitative proteomics University of Tuebingen Auf der Morgenstelle 15 72076 Tuebingen Germany (2)
Crops Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China. (2)
BioBix, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, Ghent, Belgium (2)
Molecular Pharmacology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY (2)
Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA USA (2)
Research Officer|Proteomics and Small Molecule Mass Spectrometry Laboratory | Central Analytical Research Facility (CARF)| Queensland University of Technology | Address: Level 6, P Block, Gardens Point Campus, 2 George St Brisbane QLD 4000 (2)
Nanjing Medical University (2)
Cancer proteomics, Oncology-Pathology department, Karolinska Institutet (2)
Southwest University (2)
The Gade Research Group for Infection and Immunity, Department of Clinical Science, University of Bergen, Norway (2)
State Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Nanjing Agricultural University, Nanjing, China (2)
UMR Institut Sophia Agrobiotech, INRAE 1355, CNRS and Université Côte d’Azur, 400, Route des Chappes, BP 167, 06903 Sophia Antipolis Cedex, France (2)

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Prokaryotic Proteogenomics

PRJNA66995 | ENA

Proteogenomics analysis of Blastobotrys adeninivorans TMCC 70007

ORGANISM(S): Blastobotrys Adeninivorans

PXD020445 |

Proteogenomics Study of Lung Cancer

PRJNA1192953 | ENA

RNA-seq of human tissues

RNA-seq was performed of tissue samples from human individuals representing different tissues in order to study the human tissue transcriptome. This submission contains 14 samples used in the paper A proteogenomics workflow integrating discovery, curation and validation reveals human novel protein c...

ORGANISM(S): Homo sapiens

2017-08-01 | E-MTAB-5782 | biostudies-arrayexpress

JUMPg: an Integrative Proteogenomics Pipeline Identifying Unannotated Proteins in Human Brain and Cancer Cells

Proteogenomics is an emerging approach to improve gene annotation and interpretation of proteomics data. Here we present JUMPg, an integrative proteogenomics pipeline including customized database construction, tag-based database search, peptide-spectrum match filtering, and data visualization. JUMP...

ORGANISM(S): Homo sapiens (Human)

2017-02-20 | PXD004010 | Pride

Proteogenomics reveals two distinct biological pilocytic astrocytoma subgroups

PRJNA865354 | ENA

HiRIEFII proteomics and proteogenomics of A431 cells and five histologically normal tissues

High Resolution Isoelectric Focusing (HiRIEF) LC-MS was used to analyze samples from the human A431 cell line and also samples of histologically normal tissues. The high analytical depth afforded by HiRIEF permitted proteogenomics on these two sample sets (A431 cells and normal tissues). The A431 d...

ORGANISM(S): Homo sapiens (Human)

2018-01-19 | PXD006291 | Pride

A431 Testis Kidney Liver Tonsil Human Placenta

International Cancer Proteogenomics Consortium (ICPC): Proteogenomics of East-Asian Breast Cancer

PRJNA909917 | ENA

International Cancer Proteogenomics Consortium (ICPC): Proteogenomics of East-Asian Breast Cancer

PRJNA909918 | ENA

The influence of transcript assembly on the proteogenomics discovery of microproteins

Proteogenomics methods have identified many non-annotated protein-coding genes in the human genome. Many of the newly discovered protein-coding genes encode peptides and small proteins, referred to collectively as microproteins. Microproteins are produced through ribosome translation of small open r...

ORGANISM(S): Homo sapiens

2017-12-20 | GSE92659 | GEO

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1138 Results

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