Proteome composition

Show results for

Proteomics (2218)
Unknown (1486)
Transcriptomics (178)
Genomics (128)
Metabolomics (42)
Other (28)
Models (4)
Methylation profiling (2)
Multiomics (2)
Clinical (1)

Organisms

Homo sapiens (165)
Mus musculus (63)
Caenorhabditis elegans (55)
Saccharomyces cerevisiae (18)
Arabidopsis thaliana (15)
Escherichia coli (6)
Schizosaccharomyces pombe (4)
Zea mays (3)
Oncorhynchus mykiss (3)
Drosophila melanogaster (3)
Fusarium fujikuroi (2)
Thermotoga maritima MSB8 (2)
Salmonella enterica (2)
Macaca mulatta (2)
Xenopus laevis (2)
Bacillus anthracis (2)
Actinoplanes sp. SE50/110 (2)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (2)
Agaricus bisporus (1)
Mnemiopsis leidyi (1)
Haloarcula hispanica (1)
Saccharomyces cerevisiae BY4741 (1)
Rhodococcus opacus (1)
Lactococcus lactis subsp. lactis Il1403 (1)
Thermoplasma acidophilum DSM 1728 (1)
Ixodes scapularis (1)
Leishmania donovani (1)
Treponema denticola (1)
Daphnia pulex (1)
Monodelphis domestica (1)

Organisms

Homo sapiens (26)
Mus musculus (25)
Saccharomyces cerevisiae (4)
Caenorhabditis elegans (3)
Rattus norvegicus (2)
Limnospira indica PCC 8005 (1)
Lactiplantibacillus plantarum WCFS1 (1)
Priapulus caudatus (1)
Crotalus simus (1)
Achlya hypogyna (1)
Alligator sinensis (1)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (1)
Hypsibius dujardini (1)
Caulobacter vibrioides (1)
Hermetia illucens (1)
Trioza (1)
pig gut metagenome (1)
Perna viridis (1)
Apis mellifera (1)
Schizosaccharomyces pombe (1)
Drosophila melanogaster (1)
human gut metagenome (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Plasmodium falciparum (1)
Toxoplasma gondii (1)

Repository

pride (1785)
MassIVE (177)
biostudies-arrayexpress (140)
PeptideAtlas (126)
ENA (114)
geo (64)
iProX (48)
jPOST (43)
MetaboLights (41)
PAXDB (28)
GPMDB (17)
PanoramaPublic (9)
BioModels (4)
EGA (4)
GNPS (1)

Tissue

Cell culture (256)
Brain (113)
Epithelial cell (87)
Blood plasma (56)
Plant cell (52)
Liver (44)
Fibroblast (39)
Blood (33)
Leaf (32)
Saliva (32)
Lung (31)
Heart (30)
Others (29)
Cell suspension culture (28)
Permanent cell line cell (28)
Kidney (26)
Blood serum (24)
Skin (22)
Plasma Non-glyco (12)
Digestive System (8)
Male Reproductive System (8)
Female Reproductive System (7)
Liver (3)
Spleen (3)
Brain (2)
Adrenal Gland (1)
Kidney (1)
Lung (1)
Pancreas (1)
Urine (1)

Disease

Disease free (55)
Breast cancer (24)
Not Available (17)
Colon cancer (15)
Wounds and Injuries (14)
Alzheimer's disease (12)
Cervix carcinoma (9)
Cardiovascular system disease (7)
Infertility (7)
Malignant neoplasm of ovary (7)
Obesity (6)
Acute leukemia (5)
Chronic lymphocytic leukemia (5)
Cystic fibrosis (5)
Influenza (5)
Brain cancer (4)
Lung adenocarcinoma (4)
Plasmodium falciparum malaria (4)
Bacterial infectious disease (3)
Huntington Disease (3)
Liver cancer (3)
Lymphoma (3)
Pancreatic ductal adenocarcinoma (3)
Prostate adenocarcinoma (3)
Type 2 diabetes mellitus (3)
Bardet-Biedl syndrome 1 (2)
Chlamydia trachomatis infectious disease (2)
Crohn's disease (2)
Human immunodeficiency virus infectious disease (2)
Malignant neoplasm of colon (1)

Technology Type

Mass Spectrometry (1785)
Shotgun proteomics (1028)
Bottom-up proteomics (354)
Data-dependent acquisition (185)
Affinity purification coupled with mass spectrometry proteomics (134)
Gel-based experiment (134)
SWATH MS (78)
Data-independent acquisition (76)
Top-down proteomics (54)
Mass spectrometry (33)
Chemical cross-linking coupled with mass spectrometry proteomics (19)
HDMSE (14)
SRM/MRM (11)
All-ion fragmentation (10)
Metaproteomics (9)
MSE (8)
NMR spectroscopy (6)
DiaPASEF (5)
Mass spectrometry imaging (5)
Mass spectrometry assay (3)
Affinity proteomics (3)
Immunopeptidomics (2)

Instrument Platform

LTQ Orbitrap Velos (76)
LTQ Orbitrap Elite (52)
Q Exactive (31)
TripleTOF 5600 (23)
Orbitrap Fusion Lumos (22)
Instrument (17)
Q Exactive HF (14)
Orbitrap Exploris 480 (11)
Orbitrap Fusion (11)
Q Exactive HF-X (9)
Q Exactive Plus (9)
TimsTOF Pro (7)
Orbitrap Eclipse (5)
TimsTOF Pro 2 (5)
Illumina HiSeq 2500 (4)
LTQ Orbitrap XL (4)
NextSeq 500 (3)
LTQ XL ETD (3)
Illumina MiSeq (2)
Illumina HiSeq 2000 (2)
LTQ (2)
Agilent 2100 Bioanalyzer (1)
ScanArray 4000 [PerkinElmer] (1)
Bioanalyser (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 1000 (1)
HS4800 hybridization station (1)
Illumina HiSeq 1500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)

Publication Date

2025 (294)
2024 (261)
2022 (251)
2023 (250)
2021 (236)
2026 (192)
2020 (166)
2019 (153)
2015 (127)
2018 (110)
2014 (101)
2017 (96)
2016 (90)
2013 (42)
2012 (20)
2010 (13)
2008 (9)
2011 (8)
2009 (7)
2007 (3)
2006 (1)
2005 (1)

UNIPROT ID/AC

1433A_SOYBN (6)
1433B_SOYBN (6)
1433C_SOYBN (6)
1433D_SOYBN (6)
3847.GLYMA01G25116.1 (6)
3847.GLYMA01G33803.1 (6)
3847.GLYMA02G01060.2 (6)
3847.GLYMA02G01170.1 (6)
3847.GLYMA02G04090.1 (6)
3847.GLYMA02G07430.1 (6)
3847.GLYMA02G24818.1 (6)
3847.GLYMA02G40806.1 (6)
3847.GLYMA03G00640.1 (6)
3847.GLYMA03G05481.1 (6)
3847.GLYMA03G06350.3 (6)
3847.GLYMA03G11580.1 (6)
3847.GLYMA03G13810.1 (6)
3847.GLYMA03G15040.1 (6)
3847.GLYMA03G17290.1 (6)
3847.GLYMA03G24710.1 (6)
3847.GLYMA03G25541.1 (6)
3847.GLYMA03G29801.1 (6)
3847.GLYMA03G35860.1 (6)
3847.GLYMA03G36580.1 (6)
3847.GLYMA03G40130.1 (6)
3847.GLYMA04G07370.1 (6)
3847.GLYMA04G13531.1 (6)
3847.GLYMA04G16130.1 (6)
3847.GLYMA04G19010.1 (6)
3847.GLYMA04G20640.1 (6)

ENSEMBL ID

ENSG00000170477 (68)
ENSG00000229353 (48)
ENSG00000147251 (23)
ENSG00000247315 (14)
ENSG00000176092 (3)
ENSG00000204131 (3)

CHEBI ID

CHEBI:15428 (14)
CHEBI:27897 (14)
CHEBI:24898 (12)
CHEBI:15741 (12)
CHEBI:27266 (12)
CHEBI:16449 (12)
CHEBI:16704 (12)
CHEBI:18012 (12)
CHEBI:17368 (12)
CHEBI:18237 (11)
CHEBI:28300 (11)
CHEBI:25017 (11)
CHEBI:15891 (11)
CHEBI:28044 (10)
CHEBI:17568 (10)
CHEBI:30769 (10)
CHEBI:17992 (9)
CHEBI:18186 (9)
CHEBI:16811 (9)
CHEBI:16708 (9)
CHEBI:17562 (9)
CHEBI:16750 (9)
CHEBI:30746 (9)
CHEBI:17154 (9)
CHEBI:15940 (9)
CHEBI:15971 (9)
CHEBI:17306 (9)
CHEBI:30915 (9)
CHEBI:16919 (9)
CHEBI:15354 (9)

Metabolite Name

Creatine (7)
Tryptophan (7)
Hypoxanthine (6)
Glutamine (6)
Valine (6)
Succinic acid (6)
Thymidine (6)
Creatinine (6)
Hippuric acid (6)
Leucine (5)
Glycine (5)
Uridine (5)
Tryptophan (5)
Taurine (5)
Saccharopine (5)
Lysine (5)
Guanosine (5)
Asparagine (5)
Phenylalanine (5)
Threonine (5)
Methionine (5)
Glucose (5)
Alanine (5)
Valine (5)
Isoleucine (5)
Leucine (5)
Glycine (5)
Spermidine (5)
Uracil (5)
Deoxyuridine (5)

First Public Date

2025 (18)
2026 (16)
2024 (15)
2022 (12)
2023 (10)
2020 (8)
2019 (7)
2018 (6)
2014 (6)
2021 (4)
2017 (4)
2015 (3)
2016 (2)
2013 (2)
2012 (1)

Modelling Approach

Constraint-based model (4)

Study status

Recruiting (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (24)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (10)
Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (10)
Department of Ecology & Evolutionary Biology, University of California, Los Angeles, CA (8)
Wageningen University (7)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (6)
ETH Zurich (6)
Forest Products Laboratory, Institute for Microbial and Biochemical Sciences, USDA (6)
Associate Professor of Genetics Stanford University USA (5)
Center for Reproductive Evolution, Biology Department, Syracuse University (5)
Department of Microbiology and Immunology, University of Melbourne, Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia (5)
MDC (5)
1Clinic of Operative Dentistry, Periodontology and Preventive Dentistry, University Hospital, Saarland University, Kirrberger Strasse building 73, 66421 Homburg/Saar, Germany (4)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (4)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth St, Melbourne 3000, Australia (4)
Department of Molecular Microbiology, Washington University School of Medicine, St Louis, MO 63110, USA. (4)
EDyP (4)
Head of the Curie Institute Mass Spectrometry Platform (4)
Infection Program, Monash Biomedicine Discovery Institute, Department of Microbiology, Monash University, VIC 3800, Australia (4)
The Forsyth Institute (4)
UMR 7367 CNRS-UL IMoPA Biopôle de l'Université de Lorraine Campus Brabois-Santé 9 avenue de la forêt de Haye 54505 Vandoeuvre-les-Nancy FRANCE (4)
1School of Natural Sciences, Macquarie University, Sydney, NSW, Australia 2Institute for Glyco-core Research (iGCORE), Nagoya University, Aichi, Japan (3)
BGI Research (3)
Baker Heart and Diabetes Institute (3)
Chemical and Biological Engineering, The Hong Kong University of Science and Technology (HKUST) (3)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (3)
Department of Synthetic Chemistry & Biological Chemistry, Graduate School of Engineering, Kyoto Univ. Katsura, Kyoto 615-8510, JAPAN (3)
Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, 08028 Barcelona, Spain Institució Catalana de Recerca i Estudis Avançats (ICREA), 08010 Barcelona, Spain (3)
Keck MS & Proteomics Resource Yale School of Medicine (3)
MRC Toxicology Unit, University of Cambridge (3)

IsPrivate

False (4)

Submitter Keywords

FROG (1)

Classification

protozoa (2)

Modification

57.021464 (5)
-17.026549 (4)
15.994915 (4)
4x(15)N labeled L-arginine (4)
2x(15)N labeled L-lysine (3)
42.010565 (3)
-18.010565 (2)
79.966331 (2)
N6 (2)
+3amu) (1)
0.984 (1)
10.008269 (1)
144.105918 (1)
15.99491 (1)
203.0794 (1)
42.01056 (1)
45.029395 (1)
4x(2)H labeled dimethylated residue (1)
57.02146 (1)
6.020129 (1)
6x(2)H labeled dimethylated L-arginine (1)
71.037114 (1)
79.96633 (1)
Methionine (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (63)
RNA-seq of coding RNA (57)
Unknown experiment type (4)
Transcription profiling by tiling array (2)
ChIP-seq (2)
DNA-seq (2)
RNA-seq of non coding RNA (2)
RNA-seq of non coding RNA from single cells (1)
MicroRNA profiling by high-throughput sequencing (1)
ChIP-chip by tiling array (1)
Translation profiling (1)
High-throughput sequencing (1)
Proteomic profiling by array (1)
Methylation profiling by high throughput sequencing (1)
Observational (1)

Release Date

2022 (154)
2025 (140)
2021 (133)
2020 (124)
2023 (121)
2024 (115)
2019 (104)
2015 (99)
2018 (97)
2016 (83)
2017 (79)
2013 (63)
2014 (62)
2012 (60)
2010 (41)
2011 (39)
2009 (27)
2026 (26)
2008 (23)
2007 (14)
2006 (10)
2005 (4)
2003 (3)
2004 (2)
2001 (2)
2002 (1)

Location

Germany (1)

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The Bardet-Biedl protein Bbs1 controls photoreceptor outer segment protein and lipid composition

Summary

Primary cilia are key sensory organelles whose dysfunction leads to ciliopathy disorders such as Bardet-Biedl syndrome (BBS). Retinal degeneration is common in ciliopathies, since the outer segments (OSs) of photoreceptors are highly specialized primary cilia. BBS...

2022-02-18 | MTBLS4013 | MetaboLights

Genome concentration limits cell growth and modulates proteome composition in Escherichia coli

PRJNA1087324 | ENA

Profiling proteome-scale antibody responses to M. tuberculosis

This SuperSeries is composed of the following subset Series: GSE30721: Profiling proteome-scale antibody responses to M. tuberculosis proteins in sera of macaques infected with M. tuberculosis GSE30722: Profiling proteome-scale antibody responses to M. tuberculosis proteins in TB suspect's sera Refe...

ORGANISM(S): Homo sapiens

2012-07-05 | E-GEOD-31368 | biostudies-arrayexpress

Genome concentration limits cell growth and modulates proteome composition in Escherichia coli

Defining the cellular factors that drive growth rate and proteome composition is essential for understanding and manipulating cellular systems. In bacteria, ribosome concentration is known to be a constraining factor of cell growth rate, while gene concentration is usually assumed not to be limiting...

ORGANISM(S): Caulobacter vibrioides Escherichia coli K-12

2024-09-01 | GSE261497 | GEO

mRNA composition of IRP2 mRNPs in mouse tissues

Affymetrix microarrays were used to determine the mRNA composition of mRNPs obtained by immunoprecipitation with IRP2 (iron regulatory protein 2). Reference Sanchez at al., 2007 Nat. Protoc. Affymetrix microarrays were used to determine the mRNA composition of mRNPs obtained by immunoprecipitation ...

ORGANISM(S): Mus musculus

2011-12-09 | E-GEOD-17097 | biostudies-arrayexpress

mRNA composition of IRP1 mRNPs in mouse tissues

Affymetrix microarrays were used to determine the mRNA composition of mRNPs obtained by immunoprecipitation with IRP1 (iron regulatory protein 1). Reference Sanchez at al., 2007 Nat. Protoc. Affymetrix microarrays were used to determine the mRNA composition of mRNPs obtained by immunoprecipitation ...

ORGANISM(S): Mus musculus

2011-12-09 | E-GEOD-17096 | biostudies-arrayexpress

Associations of the fecal microbial proteome composition and proneness to diet-induced obesity

PRJEB33328 | ENA

Azide-containing amino acid modulation of cellular transcriptome and proteome composition – implications on click chemistry based secretome analysis

PRJNA869659 | ENA

Azide-containing amino acid modulation of cellular transcriptome and proteome composition – implications on click chemistry based secretome analysis

The analysis of the secretome provides important information on cellular communication and on the recruitment and behavior of cells in specific tissues. Especially in the context of tumors, knowledge on the composition of the secretome plays an important role for diagnosis and therapy. Mass spectrom...

ORGANISM(S): Homo sapiens Mus musculus

2023-07-05 | GSE211231 | GEO

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts [PAR-CLIP]

Protein-RNA interactions are fundamental to core biological processes, such as mRNA splicing, localization, degradation and translation. We developed a photoreactive nucleotide-enhanced UV crosslinking and oligo(dT) purification approach to identify the mRNA-bound proteome using quantitative proteom...

ORGANISM(S): Homo sapiens

2012-06-01 | E-GEOD-38201 | biostudies-arrayexpress

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4088 Results

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OmicsDI is part of the ELIXIR infrastructure

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