Proteomes - OmicsDI

Show results for

Proteomics (6804)
Unknown (4190)
Transcriptomics (568)
Genomics (299)
Other (180)
Multiomics (87)
Metabolomics (65)
Models (2)
Genomic (2)
Methylation profiling (1)

Organisms

Homo sapiens (1456)
Mus musculus (338)
Arabidopsis thaliana (59)
Saccharomyces cerevisiae (49)
Escherichia coli (39)
Rattus norvegicus (30)
Caenorhabditis elegans (18)
Drosophila melanogaster (17)
Daphnia pulex (9)
Danio rerio (9)
Schizosaccharomyces pombe (8)
Zea mays (6)
Sus scrofa (5)
Bacillus subtilis subsp. subtilis str. 168 (5)
Corynebacterium glutamicum (4)
Xenopus laevis (4)
Haloarcula hispanica (3)
Thermotoga maritima MSB8 (3)
Rhodopirellula baltica (3)
Medicago truncatula (3)
Streptococcus pneumoniae (3)
Streptomyces coelicolor (3)
Fusarium fujikuroi (2)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (2)
Salmonella enterica (2)
Macaca mulatta (2)
Brassica napus (2)
Macaca fascicularis (2)
Bacillus anthracis (2)
Mycobacterium tuberculosis (1)

Organisms

Homo sapiens (60)
Mus musculus (32)
Drosophila melanogaster (4)
Rattus norvegicus (4)
Schizosaccharomyces pombe (3)
Saccharomyces cerevisiae (3)
Gossypium hybrid cultivar (2)
Mycoplasmoides pneumoniae (2)
Sus scrofa (2)
Escherichia coli (2)
Plasmodium falciparum (2)
Ophelina (1)
Polybia occidentalis (1)
Crotalinae (1)
Andalucia godoyi (1)
Araucaria angustifolia (1)
Ophrys (1)
Streptomyces sp. SirexAA-E (1)
Phaeoacremonium minimum (1)
Anabaena sp. 90 (1)
Anguilla anguilla (1)
Aspergillus aff. fumigatus (1)
Trichoplusia ni (1)
Micrurus (1)
Listeria monocytogenes N53-1 (1)
Listeria monocytogenes La111 (1)
Embryophyta (1)
Streptomyces coelicolor (1)
Escherichia coli str. K-12 substr. MG1655 (1)
invertebrate gut metagenome (1)

Repository

pride (2885)
MassIVE (1617)
jPOST (1061)
biostudies-arrayexpress (502)
PeptideAtlas (406)
PAXDB (387)
iProX (337)
ENA (241)
GPMDB (163)
geo (124)
PanoramaPublic (85)
MetaboLights (61)
EGA (37)
LINCS (6)
GNPS (4)
ExpressionAtlas (2)
dbGaP (2)
NODE (2)
BioModels (1)
EVA (1)
FAIRDOMHub (1)

Tissue

Cell culture (494)
Brain (181)
Epithelial cell (153)
Others (107)
Blood plasma (105)
Digestive System (104)
Plant cell (98)
Liver (96)
Leaf (83)
Blood (80)
Permanent cell line cell (65)
Whole body (61)
Kidney (59)
Lung (57)
Cell suspension culture (50)
Heart (49)
Pancreas (19)
Male Reproductive System (14)
Female Reproductive System (13)
Liver (8)
Heart (6)
Lung (4)
Kidney (4)
Spleen (3)
Pancreas (3)
Breast (3)
Brain (3)
Adrenal Gland (2)
Urine (1)
Plasma Non-glyco (1)

Disease

Not Available (163)
Disease free (71)
Breast cancer (57)
Colon cancer (49)
Alzheimer's disease (26)
Rectum adenocarcinoma (21)
Colon adenocarcinoma (21)
Glioblastoma (19)
Melanoma (17)
Wounds and Injuries (17)
Malignant neoplasm of ovary (16)
Acute leukemia (16)
Type 2 diabetes mellitus (13)
Non-small cell lung carcinoma (12)
Cardiovascular system disease (12)
Plasmodium falciparum malaria (11)
Prostate adenocarcinoma (11)
Cervix carcinoma (11)
Lung cancer (10)
Amyotrophic lateral sclerosis (10)
Toxoplasmosis (9)
Pulmonary tuberculosis (8)
Brain cancer (8)
Hepatocellular carcinoma (7)
COVID-19 (7)
Multiple sclerosis (6)
Colorectal cancer (3)
Adenovirus infected (1)
Normal (1)
Breast Carcinoma (1)

Technology Type

Mass Spectrometry (2885)
Shotgun proteomics (1663)
Bottom-up proteomics (627)
Data-dependent acquisition (344)
Affinity purification coupled with mass spectrometry proteomics (208)
Data-independent acquisition (201)
Gel-based experiment (156)
SWATH MS (143)
Top-down proteomics (75)
Mass spectrometry (50)
DiaPASEF (28)
HDMSE (27)
SRM/MRM (23)
Chemical cross-linking coupled with mass spectrometry proteomics (19)
All-ion fragmentation (12)
MSE (11)
Mass spectrometry assay (9)
Affinity proteomics (7)
Immunopeptidomics (7)
Proteogenomics (4)
Mass spectrometry (3)
NMR spectroscopy (3)
Metaproteomics (3)
Mass spectrometry imaging (3)
ILLUMINA, Illumina HiSeq 2000 (1)
SWATH-MS (1)
Glycoproteomics (1)

Instrument Platform

Illumina HiSeq 2000 (18)
Illumina HiSeq 2500 (9)
Illumina NovaSeq 6000 (8)
NextSeq 500 (8)
Illumina MiSeq (7)
Illumina HiSeq 4000 (7)
NextSeq 2000 (4)
AB SOLiD 4 System (3)
Illumina Genome Analyzer IIx (3)
Illumina Genome Analyzer II (3)
Illumina HiSeq 1000 (3)
Not applicable (2)
Scanning hardware (2)
NextSeq 550 (2)
Coulter Automated Workstation Biomek i7 Hybrid (1)
RNeasy 96-well plate kit (1)
C1000 Touch PCR thermal cycler (Bio-Rad) (1)
Qubit 4.0 and TapeStation (1)
Element AVITI (1)
GenePix4000B (1)
MacBook Pro 64Gb RAM; 16-core (1)
Qubit 2.0 Fluorometer; Agilent TapeStation 4200 (1)
SureScan Microarray Scanner (Agilent Technologies) (1)
10X Genomics Chromium (1)
GenePix 4000B Microarray Scanner (1)
Truseq RNA v2 (1)
HiSeq 1500 (1)
Infors HT Multitron shaker (1)
Genetix aQuire (1)
MagNA Lyser (1)

Publication Date

2024 (1137)
2023 (721)
2022 (654)
2020 (610)
2025 (576)
2021 (545)
2014 (492)
2026 (407)
2019 (398)
2018 (337)
2016 (321)
2017 (281)
2015 (213)
2013 (149)
2011 (71)
2010 (70)
2012 (68)
2008 (44)
2009 (32)
2007 (14)
2006 (13)
2005 (8)
2003 (1)

UNIPROT ID/AC

TPIS_HUMAN (83)
HS90B_HUMAN (82)
G6PI_HUMAN (82)
G3P_HUMAN (82)
PEBP1_HUMAN (82)
IF5A1_HUMAN (82)
I6X8D2 (1)
P9WPB3 (1)
Q79FX8 (1)
P0CH91 (1)
Q79FX6 (1)
P9WPB1 (1)
P9WQD9 (1)
P9WQD7 (1)
P9WGR1 (1)
O53580 (1)
P9WNG3 (1)
I6Y778 (1)
P9WGR9 (1)
P9WGT3 (1)
P9WNG5 (1)
P9WNZ3 (1)
P9WNZ7 (1)
P9WPB5 (1)
P9WQD3 (1)
P9WQH7 (1)
O53578 (1)
P9WQH9 (1)
P96890 (1)
P95029 (1)

ENSEMBL ID

ENSG00000170477 (258)
ENSG00000229353 (134)
ENSG00000147251 (75)
ENSECAP00000007368 (49)
ENSECAG00000021580 (49)
ENSECAG00000014414 (49)
ENSECAG00000009556 (49)
ENSECAG00000006095 (49)
ENSECAG00000004960 (49)
ENSECAP00000013223 (48)
ENSECAP00000003495 (48)
ENSECAG00000021499 (48)
ENSECAG00000019927 (48)
ENSECAG00000011847 (48)
ENSECAG00000009752 (48)
ENSECAG00000004973 (48)
ENSECAG00000001810 (48)
ENSECAG00000014858 (47)
ENSECAG00000010481 (46)
ENSECAG00000000207 (46)
ENSECAP00000007504 (44)
ENSECAG00000000548 (44)
ENSG00000247315 (43)
ENSECAG00000024571 (42)
ENSECAG00000016475 (42)
ENSECAG00000012096 (42)
ENSECAG00000004201 (42)
ENSECAG00000019900 (40)
ENSECAG00000021882 (39)
ENSECAG00000015581 (39)

CHEBI ID

CHEBI:22036 (1)
CHEBI:12742 (1)
CHEBI:33442 (1)
CHEBI:45607 (1)
CHEBI:12757 (1)
CHEBI:12760 (1)
CHEBI:13394 (1)
CHEBI:10833 (1)
CHEBI:57540 (1)
CHEBI:13393 (1)
CHEBI:10786 (1)
CHEBI:527887 (1)
CHEBI:21901 (1)
CHEBI:44214 (1)
CHEBI:44215 (1)
CHEBI:7422 (1)
CHEBI:44281 (1)
CHEBI:29867 (1)
CHEBI:7423 (1)
CHEBI:44216 (1)
CHEBI:13396 (1)
CHEBI:57945 (1)
CHEBI:13395 (1)
CHEBI:21902 (1)
CHEBI:13419 (1)
CHEBI:13365 (1)
CHEBI:42857 (1)
CHEBI:44819 (1)
CHEBI:29356 (1)
CHEBI:44701 (1)

Metabolite Name

Glycine (11)
Serine (10)
Lysine (10)
Valine (10)
Leucine (10)
Fumarate (9)
Cysteine (9)
Arginine (9)
Histidine (9)
Phenylalanine (9)
Tyrosine (9)
Threonine (9)
Glutamine (9)
Alanine (9)
Isoleucine (9)
Spermidine (9)
Xanthosine (8)
Tryptophan (8)
Taurine (8)
Proline (8)
Glutamate (8)
Cytidine (8)
Cystathionine (8)
Carnitine (8)
Aspartate (8)
Asparagine (8)
3-phosphoglycerate (8)
Glucose (8)
7-methylguanine (8)
Uracil (8)

First Public Date

2024 (32)
2026 (31)
2023 (27)
2021 (20)
2018 (20)
2025 (18)
2014 (16)
2020 (14)
2019 (14)
2022 (13)
2017 (13)
2016 (7)
2015 (7)
2013 (6)
2012 (3)

Modelling Approach

Constraint-based model (1)

Lab affiliation

Vanderbilt University (22)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (17)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (15)
School of Life Sciences, University of Warwick (9)
School of Life Sciences, Central China Normal University, Wuhan, Hubei province, China (9)
EDyP (9)
USDA-ARS (9)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (9)
Head of the Curie Institute Mass Spectrometry Platform (9)
Department of Ecology & Evolutionary Biology, University of California, Los Angeles, CA (8)
Proteomics facility, Central Science Laboratory, University of Tasmania (8)
University Hospital Cologne (8)
Professor, Deputy Head of Centre Novo Nordisk Foundation Center for Protein Research University of Copenhagen Copenhagen, DENMARK (7)
North Carolina State University (7)
Merck (6)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (6)
Department of Molecular Microbiology, Washington University School of Medicine, St Louis, MO 63110, USA. (5)
1VIB-UGent Center for Medical Biotechnology, VIB, 9052 Ghent, Belgium 2Department of Biomolecular Medicine, Ghent University, 9052 Ghent, Belgium (5)
Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, 28220 Majadahonda, Madrid, Spain (5)
Departamento de Bioquímica y Biología Molecular. Edificio Severo Ochoa, planta 1, ala Este. Campus de Rabanales. Universidad de Córdoba. 14071-Córdoba. Spain. (5)
State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan,Hubei 430062, China (5)
Institute of Cancer Research, London (5)
Globe Institute, University of Copenhagen, Denmark (5)
Department of Molecular and Cellular Neurobiology, Center for Neurogenomics & Cognitive Research, Neuroscience Campus Amsterdam, VU University, Amsterdam, The Netherlands (5)
Department of Biology, IISER Pune (5)
University of Edinburgh (5)
Proteomics (5)
Molecular Pharmacology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA (4)
Shenzhen Second People’s Hospital, The First Affiliated Hospital of Shenzhen University, Shenzhen, China (4)
Professor, Microbiology, Immunology, and Pathology Mycobacteria Research Laboratories Scientific Director, Rocky Mountain Regional Biocontainment Laboratory Editor-in-chief, BMC Mycobacteria (4)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (1)

Classification

bacteria (9)
fungi (2)
protozoa (2)

Modification

Not available (13)
15.994915 (10)
4x(15)N labeled L-arginine (10)
2x(15)N labeled L-lysine (9)
57.021464 (7)
42.010565 (4)
56.026215 (3)
-17.026549 (3)
N6 (3)
59.036279 (2)
4'-dihydroxyphenylalanine (2)
58.005479 (2)
57.02146 (2)
15.99491 (2)
N6-dimethyl-L-lysine (2)
4-tetrahydrothiazine-3-carboxylic acid (2)
227.126991 (1)
9.030194 (1)
144.105918 (1)
6.020129 (1)
45.029395 (1)
-17.0266 (1)
43.00581 (1)
0.984016 (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
4x(2)H labeled dimethylated residue (1)

Study type

Transcription profiling by array (272)
RNA-seq of coding RNA (129)
Proteomic profiling by array (20)
Unknown experiment type (10)
RNA-seq of non coding RNA (9)
Transcription profiling by tiling array (7)
Other (6)
Antigen profiling (5)
Transcription profiling by SAGE (3)
Proteomic profiling by mass spectrometer (3)
RIP-seq (3)
ChIP-seq (3)
Methylation profiling by high throughput sequencing (3)
Translation profiling (2)
High-throughput sequencing (2)
Human - One-color microarray (2)
Comparative genomic hybridization by array (2)
DNA-seq (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of total RNA (2)
Cell line - Methylation microarray (1)
RNA-seq of non coding RNA from single cells (1)
RIP-chip by array (1)
Animal - One-color microarray (1)
MicroRNA profiling by high-throughput sequencing (1)
ChIP-chip by tiling array (1)
One-color microarray (1)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)

Release Date

2022 (411)
2023 (398)
2021 (379)
2025 (366)
2024 (343)
2020 (334)
2019 (281)
2018 (273)
2017 (253)
2016 (248)
2015 (238)
2014 (233)
2013 (170)
2012 (149)
2010 (135)
2011 (130)
2008 (82)
2009 (74)
2026 (55)
2007 (47)
2005 (30)
2006 (24)
2004 (16)
2003 (9)
2002 (6)
2000 (3)
2001 (1)

Previous page
1 / 1212
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 1212
Next page

Sort by:

Relevance

Page size

Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity of Mammalian Proteomes

The ability to sequence genomes has far outstripped approaches for deciphering the information they encode. Here we present a suite of techniques, based on ribosome profiling (the deep-sequencing of ribosome-protected mRNA fragments), to provide genome-wide maps of protein synthesis as well as a p...

ORGANISM(S): Mus musculus

2011-11-03 | E-GEOD-30839 | biostudies-arrayexpress

Metabolic switches and adaptations deduced from the proteomes of Streptomyces coelicolor wild type and phoP mutant grown in batch culture

Bacteria in the genus Streptomyces are soil dwelling oligotrophs and important producers of secondary metabolites. Previously we showed that global mRNA expression was subject to a series of metabolic and regulatory switches during the life time of a fermentor batch culture of S. coelicolor M145. He...

ORGANISM(S): Streptomyces coelicolor

2011-12-31 | E-GEOD-31068 | biostudies-arrayexpress

Shared and unique proteins in human, mouse and rat saliva proteomes: Footprints of functional adaptation.

Not available

S-EPMC4051352 | biostudies-literature

Is Five Percent Too Small? Analysis of the Overlaps between Disorder, Coiled Coil and Collagen Predictions in Complete Proteomes.

Not available

S-EPMC5302728 | biostudies-literature

Regional Specializations of the PAZ Proteomes Derived from Mouse Hippocampus, Olfactory Bulb and Cerebellum.

Not available

S-EPMC5217373 | biostudies-literature

Methylated eEF1A Selectively Decodes mRNA to Shape Cancer Proteomes