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Proteomics (64422)
Unknown (39465)
Genomics (3309)
Transcriptomics (1730)
Metabolomics (448)
Other (342)
Multiomics (207)
Models (83)
Methylation profiling (26)
Genomic (10)
Clinical (6)

Organisms

Homo sapiens (8396)
Mus musculus (2754)
Rattus norvegicus (271)
Escherichia coli (261)
Arabidopsis thaliana (256)
Saccharomyces cerevisiae (168)
Drosophila melanogaster (129)
Staphylococcus aureus (96)
Gallus gallus (92)
Oryza sativa (74)
synthetic construct (51)
Zea mays (51)
Sus scrofa (44)
Danio rerio (39)
unidentified (22)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (13)
Chlamydomonas reinhardtii (13)
Klebsiella pneumoniae (11)
Solanum tuberosum (6)
Rhodospirillum rubrum (6)
Xenopus laevis (5)
Burkholderia cenocepacia H111 (4)
Campylobacter jejuni (4)
Geobacter sulfurreducens PCA (3)
Dictyostelium discoideum (3)
Methanothermobacter thermautotrophicus (1)
Methanothermobacter marburgensis str. Marburg (1)
Methanothermobacter thermautotrophicus str. Delta H (1)
Eukaryota (1)
Mammalia (1)

Organisms

Homo sapiens (1117)
Mus musculus (560)
Rattus norvegicus (31)
Arabidopsis thaliana (16)
Macaca mulatta (15)
Caenorhabditis elegans (14)
Staphylococcus aureus (14)
Saccharomyces cerevisiae (14)
Drosophila melanogaster (13)
Sus scrofa (11)
Escherichia coli (11)
Bos taurus (10)
Danio rerio (9)
Gallus gallus (8)
Zea mays (6)
Schizosaccharomyces pombe (5)
Ovis aries (5)
Bacillus cereus (5)
Campylobacter jejuni subsp. jejuni (4)
Xenopus laevis (4)
Mesocricetus auratus (4)
Oryza sativa (4)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (3)
Rhodospirillum rubrum (3)
Escherichia coli str. K-12 substr. MG1655 (3)
Cricetulus griseus (3)
Synechocystis sp. PCC 6803 (3)
Chlamydomonas reinhardtii (3)
Hordeum vulgare (3)
Tetrahymena thermophila (3)

Repository

pride (39981)
MassIVE (9499)
iProX (7355)
jPOST (3083)
ENA (2832)
PeptideAtlas (2294)
geo (2241)
PAXDB (960)
biostudies-arrayexpress (696)
PanoramaPublic (464)
MetaboLights (322)
GPMDB (180)
EGA (136)
GNPS (126)
BioModels (83)
NODE (63)
LINCS (26)
ExpressionAtlas (18)
dbGaP (10)
EVA (4)

Tissue

Brain (2093)
Liver (1223)
Blood plasma (1108)
Blood (893)
Kidney (769)
Heart (744)
Lung (686)
Blood serum (587)
Colon (489)
Skin (420)
Embryo (331)
Cell line (10)
Breast (7)
Pancreas (3)
Spleen (3)
Right cardiac atrium (2)
Prostate (2)
Tissues (2)
Biliary system (1)
Diaphragm (1)
Sinoatrial node (1)
Rectum (1)
Skeletal muscle tissue (1)
Heart left ventricle (1)
Left cardiac atrium (1)
Huh7 cell (1)
Pancreatic cancer (1)
Peritoneal dialysis effluent-derived extracellular vesicles (1)
Plasma (1)
Serum (1)

Disease

Breast cancer (839)
Alzheimer's disease (236)
Not Available (180)
COVID-19 (134)
Amyotrophic lateral sclerosis (82)
Pancreatic ductal adenocarcinoma (80)
Hepatocellular carcinoma (80)
Lung adenocarcinoma (80)
Normal (7)
Triple-receptor negative breast cancer (5)
Colorectal Neoplasms (3)
Colon adenocarcinoma (2)
Colorectal cancer (2)
Obsolete hepatitis B virus related hepatocellular carcinoma (2)
Colon carcinoma (1)
Semantic dementia (1)
Papillary thyroid carcinoma (1)
Follicular thyroid adenoma (1)
Rectal mucinous adenocarcinoma (1)
Rectal adenocarcinoma (1)
Colon mucinous adenocarcinoma (1)
Cancer (1)
Follicular thyroid carcinoma (1)
Colon cancer metastasis (1)
Pancreatic adenocarcinoma (1)
Locally advanced rectal cancer (1)
IgG negative for EV71 and CA21 (1)
Normoglycaemic (1)
Cervical cancer (1)
Pathologically (histologically or cytologically) confirmed diagnosis of solid tumor (breast, lung, colorectal and head and neck) (1)

Technology Type

Mass Spectrometry (39981)
Shotgun proteomics (21068)
Bottom-up proteomics (7466)
Affinity purification coupled with mass spectrometry proteomics (4521)
Data-dependent acquisition (3872)
SRM/MRM (527)
Mass spectrometry (250)
Mass spectrometry assay (56)
Illumina (35)
Illumina HiSeq 2500 (ILLUMINA) (21)
NMR spectroscopy (20)
Mass spectrometry (18)
P100 (7)
Fluorescence intensity (5)
Illumina HiSeq 2000 (4)
SWATH-MS (4)
Microwestern (3)
Shotgun-MS (3)
ILLUMINA, Illumina HiSeq 2500, Illumina HiSeq 2500 (ILLUMINA) (2)
RPPA (2)
Illumina HumanMethylation450K, Illumina HiSeq 2500, Illumina InfiniumCoreExome-24v1-1_A, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500, Illumina HumanMethylation450K, Illumina InfiniumCoreExome-24v1-1_A (1)
Illumina, unknown (1)
Illumina HiSeq 2000, Illumina HiSeq 2500 (ILLUMINA), ILLUMINA, Illumina HiSeq 2500 (1)
ILLUMINA, Illumina HiSeq 2000, Illumina HiSeq 2500 (ILLUMINA) (1)
Illumina HiSeq 2500 (ILLUMINA), Illumina HiSeq 2000, Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (ILLUMINA), Illumina HiSeq 2000 (1)
ILLUMINA, Illumina HiSeq 2000 (1)
AB SOLiD System 3.0 (1)
NMR spectroscopy assay (1)

Instrument Platform

Illumina HiSeq 2000 (18)
Illumina HiSeq 2500 (14)
Illumina NovaSeq 6000 (12)
NextSeq 500 (10)
Illumina HiSeq 4000 (8)
NextSeq 2000 (5)
Illumina Genome Analyzer IIx (3)
Illumina Genome Analyzer II (3)
Illumina HiSeq X (2)
NextSeq 550 (2)
TruSeq stranded Total RNA kit (1)
Coulter Automated Workstation Biomek i7 Hybrid (1)
RNeasy 96-well plate kit (1)
BD Rhapsody Sequence Analysis Pipeline (1)
Aurora Cytek Cs 5L (1)
BD Rhapsody (1)
Linux (1)
MGISEQ-2000RS (1)
Chromium Controller (1)
GenePix4000B (1)
GenePix 4000 (1)
GenePix 4100A (Molecular Device) (1)
InnoScan 900 (1)
Genetix aQuire (1)
Affymetrix Gene Atlas System (1)
Affymetrix GeneChip(R) HT Scanner (1)
Affymetrix GeneChip Scanner 3000 7G (1)
Agilent 2100 Bioanalyzer (1)
AB SOLiD 4 System (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)

Publication Date

2025 (9181)
2024 (7909)
2023 (7616)
2022 (6949)
2021 (5681)
2026 (4658)
2020 (4459)
2019 (3536)
2018 (2851)
2017 (2100)
2016 (1887)
2015 (1476)
2014 (1276)
2013 (712)
2012 (420)
2011 (288)
2010 (212)
2009 (140)
2008 (103)
2006 (61)
2007 (46)
2005 (30)
2002 (9)
2004 (9)
2003 (7)
2001 (1)

UNIPROT ID/AC

KPYM_HUMAN (246)
1433E_HUMAN (245)
1433G_HUMAN (245)
1433Z_HUMAN (245)
ALDOA_HUMAN (245)
CALR_HUMAN (245)
EF1A1_HUMAN (245)
ENOA_HUMAN (245)
G6PI_HUMAN (245)
GDIB_HUMAN (245)
HS90A_HUMAN (245)
HSP7C_HUMAN (245)
HSPB1_HUMAN (245)
MYH9_HUMAN (245)
PPIA_HUMAN (245)
PRDX2_HUMAN (245)
TKT_HUMAN (245)
UBA1_HUMAN (245)
1433T_HUMAN (244)
6PGD_HUMAN (244)
EF2_HUMAN (244)
G3P_HUMAN (244)
GANAB_HUMAN (244)
HS90B_HUMAN (244)
PGAM1_HUMAN (244)
PRDX1_HUMAN (244)
TBA1C_HUMAN (244)
Q5EG47 (1)
P35569 (1)
P06213 (1)

ENSEMBL ID

ENSG00000170477 (899)
ENSG00000229353 (348)
ENSG00000147251 (261)
ENSG00000247315 (188)
ENSG00000204131 (104)
ENSBTAG00000006045 (71)
ENSBTAG00000012586 (68)
ENSBTAG00000033217 (59)
ENSMUSP00000141097 (59)
ENSBTAG00000020527 (57)
ENSBTAG00000001601 (56)
ENSBTAG00000003758 (56)
ENSBTAG00000010799 (51)
ENSECAG00000004960 (51)
ENSECAG00000009556 (51)
ENSECAG00000014414 (51)
ENSECAG00000021580 (51)
ENSECAG00000001810 (50)
ENSECAG00000004973 (50)
ENSECAG00000011847 (50)
ENSECAG00000019927 (50)
ENSECAG00000021499 (50)
ENSECAP00000007368 (50)
ENSECAP00000013223 (50)
ENSECAG00000006095 (49)
ENSECAG00000009752 (49)
ENSECAG00000014858 (49)
ENSECAP00000003495 (49)
ENSBTAG00000002507 (48)
ENSECAG00000000207 (48)

CHEBI ID

CHEBI:15741 (126)
CHEBI:18012 (123)
CHEBI:17509 (113)
CHEBI:17154 (106)
CHEBI:15971 (103)
CHEBI:16467 (101)
CHEBI:16828 (100)
CHEBI:17203 (97)
CHEBI:18019 (95)
CHEBI:17497 (88)
CHEBI:15927 (70)
CHEBI:18022 (70)
CHEBI:29154 (70)
CHEBI:7125 (70)
CHEBI:11851 (70)
CHEBI:18421 (70)
CHEBI:18191 (70)
CHEBI:17158 (70)
CHEBI:17720 (70)
CHEBI:18407 (70)
CHEBI:29033 (70)
CHEBI:15811 (70)
CHEBI:29103 (70)
CHEBI:18372 (70)
CHEBI:37737 (70)
CHEBI:16132 (70)
CHEBI:29101 (70)
CHEBI:15380 (70)
CHEBI:16240 (70)
CHEBI:17808 (70)

Metabolite Name

Creatine (42)
Adenosine (39)
Citric acid (38)
Adenine (37)
Choline (34)
Uridine (34)
Hypoxanthine (34)
Phenylalanine (32)
Uracil (31)
Betaine (31)
Creatinine (31)
L-Tyrosine (31)
L-Phenylalanine (31)
Succinic acid (30)
Methionine (29)
Xanthine (29)
Valine (28)
Leucine (27)
Guanine (27)
Uric acid (27)
Inosine (27)
Glycine (26)
Proline (26)
Azelaic acid (26)
Cytosine (25)
Alanine (25)
Guanosine (25)
Pyroglutamic acid (24)
Taurine (24)
Sucrose (24)

First Public Date

2025 (476)
2026 (443)
2024 (387)
2023 (254)
2021 (226)
2022 (196)
2014 (171)
2020 (140)
2019 (125)
2018 (90)
2017 (88)
2015 (87)
2016 (85)
2013 (60)
2012 (2)
2011 (1)
2010 (1)

Modelling Approach

Ordinary differential equation model (8)
Constraint-based model (7)

Study status

Recruiting (4)
Terminated (1)
Completed (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (137)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (126)
EDyP (98)
Head of the Curie Institute Mass Spectrometry Platform (78)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (77)
Proteomics (69)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (69)
Wageningen University (68)
Pacific Northwest National Laboratory (63)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (60)
Departments of Chemical and Biological Engineering, Chemistry, and Molecular Biosciences, the Chemistry of Life Processes Institute, and the Proteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States (60)
The University of Melbourne (55)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (54)
University of Edinburgh (54)
Head of Proteomics (50)
University of Victoria (46)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (45)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (45)
Cellzome (42)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (37)
Utrecht University (36)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (34)
University of Oxford (34)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (33)
Cornell University (33)
University Hospital Cologne (33)
Vanderbilt University (33)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (31)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (31)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (29)

Keyword

Phase-II-Study (1)
Second-line-treatment (1)
Multi-omics study (1)
Vectibix (1)
LV (1)
Open-label (1)
Inflammatory Bowel Disease (1)
Randomized (1)
Anti-VEGF monoclonal antibody (1)
RhuMAb-VEGF (1)
Adrucil (1)
Efudex (1)
Folinic Acid (1)
5-FU (1)
Avastin (1)
Colorectal (1)
CPT-11 (1)
FOLFIRI (1)
Metastatic (1)
KRAS (1)
Adenoma (1)
Panitumumab (1)
Irinotecan (1)
Capecitabine (1)
Leucovorin (1)
Bevacizumab (1)
Fluorouracil (1)
Oxaliplatin (1)

IsPrivate

False (83)

Model Flag

Non Kinetic (68)

Submitter Keywords

FROG (3)

Classification

bacteria (81)
protozoa (13)
fungi (11)
viruses (5)
helminths (2)

Modification

Not available (317)
15.994915 (228)
57.021464 (205)
4x(15)N labeled L-arginine (97)
2x(15)N labeled L-lysine (92)
42.010565 (92)
-17.026549 (64)
N6 (62)
4-tetrahydrothiazine-3-carboxylic acid (57)
N6-dimethyl-L-lysine (41)
0.984016 (36)
79.966331 (31)
-18.010565 (30)
45.029395 (18)
4 (17)
58.005479 (16)
6.020129 (16)
4x(2)H labeled dimethylated residue (15)
10.008269 (12)
+3amu) (11)
56.026215 (11)
15.99491 (9)
31.989829 (9)
45.987721 (9)
57.02146 (9)
144.102062 (8)
59.036279 (8)
27.994915 (7)
6x(2)H labeled dimethylated L-arginine (7)
71.037114 (7)

Study type

Transcription profiling by array (273)
Proteomic profiling by array (193)
RNA-seq of coding RNA (116)
ChIP-seq (23)
Antigen profiling (16)
Other (8)
Proteomic profiling by mass spectrometer (7)
Animal - One-color microarray (6)
RNA-seq of coding RNA from single cells (6)
RNA-seq of non coding RNA (6)
Methylation profiling by array (5)
RNA-seq of total RNA (4)
Unknown experiment type (3)
Cell line - High-throughput sequencing (3)
Transcription profiling by tiling array (3)
DNA-seq (3)
Cell line - One-color microarray (2)
High-throughput sequencing (2)
Animal - High-throughput sequencing (2)
Transcription profiling by RT-PCR (2)
Spatial transcriptomics by high-throughput sequencing (2)
Transcription profiling by SAGE (1)
Cell line - Single-cell sequencing (1)
Human - Methylation microarray (1)
ChIP-chip by tiling array (1)
CLIP-Seq (1)
Genotyping by array (1)
MicroRNA profiling by high throughput sequencing (1)
Comparative genomic hybridization by array (1)
RIP-seq (1)

Release Date

2025 (4195)
2022 (4084)
2023 (3784)
2021 (3777)
2024 (3584)
2020 (2997)
2019 (2478)
2018 (2158)
2017 (2021)
2016 (1942)
2015 (1751)
2014 (1540)
2013 (1165)
2012 (929)
2011 (782)
2010 (731)
2026 (605)
2009 (605)
2008 (377)
2007 (231)
2006 (136)
2005 (115)
2004 (68)
2003 (52)
2002 (25)
2001 (14)
2000 (4)

Location

China (2)
India (1)
Germany (1)
United States (1)
Australia (1)

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Global Proteomics Indicates Subcellular-Specific Anti-Ferroptotic Responses to Ionizing Radiation.

Not available

S-EPMC11780130 | biostudies-literature

Heart-muscle expression ratios in pig obtained by 454-sequencing, iTRAQ-based proteomics and cDNA microarrays

The recent development within high-throughput technologies for expression profiling has allowed for parallel analysis of transcriptomes and proteomes in biological systems such as comparative analysis of transcript and protein levels of tissue regulated genes. Until now, such studies of have only in...

ORGANISM(S): Sus scrofa

2009-01-22 | E-GEOD-10122 | biostudies-arrayexpress

Visualize: a free and open source multifunction tool for proteomics data analysis.

Not available

S-EPMC3816356 | biostudies-literature

mRNA-Seq expression and MS3 proteomics profiling of human post-mortem BA9 brain tissue for Parkinson Disease and neurologically normal individuals

Parkinson disease (PD) is a neurodegenerative disease characterized by the accumulation of alpha-synuclein (SNCA) and other proteins in aggregates termed â€œLewy Bodiesâ€ within neurons. PD has both genetic and environmental risk factors, and while processes leading to aberrant protein aggregation ...

ORGANISM(S): Homo sapiens

2016-01-15 | E-GEOD-68719 | biostudies-arrayexpress

ProteinInferencer: Confident protein identification and multiple experiment comparison for large scale proteomics projects.

Not available

S-EPMC4630118 | biostudies-literature

Dissecting sexual dimorphism in aortic valve stenosis by proteomics.

Not available

S-EPMC12502187 | biostudies-literature

Exploring the potential of public proteomics data.

Not available

S-EPMC4738454 | biostudies-literature

Urine proteomics identifies biomarkers for diabetic kidney disease at different stages.