Protozoa - OmicsDI

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Genomics (2980)
Unknown (1942)
Transcriptomics (105)
Proteomics (97)
Metabolomics (39)
Other (5)
Models (2)
Clinical (2)

Organisms

Homo sapiens (18)
Plasmodium falciparum (10)
Toxoplasma gondii (8)
Mus musculus (8)
Leishmania major (6)
Trypanosoma cruzi (5)
Trypanosoma brucei (4)
Leishmania infantum (4)
Anopheles gambiae (4)
Leishmania donovani (4)
Plasmodium falciparum 3D7 (4)
Gallus gallus (4)
Leishmania tarentolae (3)
Plasmodium berghei (3)
Ichthyophthirius multifiliis (2)
Schistosoma japonicum (2)
Trypanosoma brucei brucei (2)
Sterkiella histriomuscorum (2)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (2)
Chlorella sorokiniana (1)
Trichinella spiralis (1)
Cryptosporidium parvum (1)
Theileria parva (1)
Trichomonas vaginalis (1)
Eimeria tenella (1)
Plasmodium yoelii (1)
Biomphalaria glabrata (1)
Daphnia magna (1)
Chlamydomonas reinhardtii (1)
Entamoeba histolytica (1)

Organisms

Plasmodium falciparum (567)
Plasmodium vivax (238)
Toxoplasma gondii (181)
Dictyostelium discoideum (91)
Trypanosoma brucei brucei (77)
Plasmodium falciparum 3D7 (75)
Trypanosoma brucei (71)
Trypanosoma cruzi (71)
Leishmania major (60)
Entamoeba histolytica (52)
Plasmodium berghei (52)
Cryptosporidium parvum (45)
Leishmania donovani (40)
Leishmania tropica (38)
Giardia duodenalis (34)
Plasmodium berghei ANKA (27)
Cryptosporidium hominis (25)
Toxoplasma gondii RH (25)
Plasmodium falciparum NF54 (22)
Acanthamoeba castellanii (22)
Leishmania infantum (21)
Babesia microti (18)
Plasmodium falciparum Dd2 (17)
Plasmodium yoelii (17)
Cyclospora cayetanensis (16)
Trichomonas vaginalis (16)
Babesia bovis (13)
Badhamia polycephala (12)
Theileria parva (11)
bovine gut metagenome (11)

Repository

ENA (2965)
biostudies-arrayexpress (85)
pride (40)
MetaboLights (39)
MassIVE (34)
geo (31)
jPOST (11)
iProX (8)
EGA (5)
EVA (4)
PanoramaPublic (3)
BioModels (1)
FAIRDOMHub (1)
PAXDB (1)

Tissue

Cell culture (12)
Rumen (3)
Cell suspension culture (2)
Anatomical entity (1)
Tachyzoite (1)
Foreskin fibroblast cell line (1)
Extracellular exosome (1)
Blood serum (1)
Feces (1)
Leaf (1)
Permanent cell line cell (1)
B cell (1)

Disease

Giardiasis (2)
Disease free (2)
Colorectal Neoplasms, Hereditary Nonpolyposis (1)
Colorectal Neoplasms (1)
Parasitic protozoa infectious disease (1)
Visceral leishmaniasis (1)
Leishmaniasis (1)

Technology Type

Mass Spectrometry (40)
Mass spectrometry (34)
Shotgun proteomics (28)
Gel-based experiment (6)
Mass spectrometry assay (5)
SWATH MS (5)
Data-dependent acquisition (2)
Bottom-up proteomics (2)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (10)
NextSeq 2000 (8)
Illumina NovaSeq 6000 (8)
LTQ (8)
Liquid Chromatography MS - positive - reverse phase (8)
Q Exactive Plus (7)
Orbitrap Fusion Lumos (6)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (6)
Illumina HiSeq 4000 (4)
- (3)
Orbitrap Fusion (3)
Illumina NovaSeq X (2)
Illumina HiSeq 2000 (2)
LTQ Orbitrap Velos (2)
Orbitrap Eclipse (2)
Chromium Controller (1)
AB SOLiD 4 System (1)
GridION (1)
N/A (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
Illumina (1)
Oritrap Q Exactive HF (1)
Pegasus 4D GCxGC-TOF MS (Leco) (1)
6520A Quadrupole Time-of-Flight LC/MS (1)
LTQ Orbitrap Elite (1)
TimsTOF Pro (1)
Q Exactive (1)
LTQ Orbitrap (1)

Publication Date

2025 (28)
2024 (23)
2022 (22)
2026 (19)
2023 (19)
2011 (16)
2019 (15)
2020 (14)
2018 (14)
2010 (14)
2016 (10)
2021 (10)
2017 (8)
2012 (7)
2013 (6)
2005 (6)
2008 (5)
2015 (4)
2009 (4)
2014 (3)
2007 (1)
2002 (1)
2006 (1)

UNIPROT ID/AC

B9PPX8_TOXGV (1)
V4ZGI5_TOXGV (1)
A0A0F7UVN4_TOXGV (1)
A0A0F7UZR3_TOXGV (1)
B9PN16_TOXGV (1)
V5BD96_TOXGV (1)
B6KBN3_TOXGV (1)
A0A125YFQ5_TOXGV (1)
B6KTY8_TOXGV (1)
B6KH93_TOXGV (1)
A0A125YTD3_TOXGV (1)
A0A0F7UZH2_TOXGV (1)
B6KHM9_TOXGV (1)
B9Q0H1_TOXGV (1)
B6KNZ3_TOXGV (1)
B9PPN2_TOXGV (1)
V5B5J6_TOXGV (1)
A0A125YPJ6_TOXGV (1)
A0A125YX76_TOXGV (1)
B9Q857_TOXGV (1)
V4Z6D5_TOXGV (1)
B9PJR5_TOXGV (1)
B9PNL1_TOXGV (1)
B9QEX1_TOXGV (1)
B9PNS0_TOXGV (1)
V4YX16_TOXGV (1)
B9Q5H6_TOXGV (1)
B9QHE3_TOXGV (1)
B9Q6N4_TOXGV (1)
V4Z8F6_TOXGV (1)

CHEBI ID

CHEBI:15428 (12)
CHEBI:16737 (12)
CHEBI:16235 (10)
CHEBI:73024 (10)
CHEBI:15891 (10)
CHEBI:16708 (9)
CHEBI:17929 (9)
CHEBI:17203 (9)
CHEBI:18050 (9)
CHEBI:16015 (9)
CHEBI:30769 (9)
CHEBI:15978 (8)
CHEBI:32816 (8)
CHEBI:17794 (5)
CHEBI:15422 (5)
CHEBI:16761 (5)
CHEBI:16084 (1)
CHEBI:35780 (1)
CHEBI:29052 (1)
CHEBI:28013 (1)
CHEBI:17754 (1)
CHEBI:15361 (1)
CHEBI:17835 (1)
CHEBI:16001 (1)
CHEBI:17665 (1)
CHEBI:16908 (1)
CHEBI:15846 (1)
CHEBI:16108 (1)
CHEBI:18021 (1)
CHEBI:17234 (1)

Metabolite Name

L-Glutamine (10)
Creatinine (10)
AMP (8)
L-Proline (8)
Taurine (8)
Adenine (8)
Hypoxanthine (8)
L-Alanine (7)
L-Arginine (7)
L-Threonine (7)
Guanine (7)
L-Tryptophan (7)
L-Glutamate (7)
Cytidine (7)
Xanthine (7)
Glycine (6)
2-C-Methyl-D-erythritol 4-phosphate (6)
CMP (6)
Carnosine (6)
L-Ornithine (6)
2-Ethylhexyl phthalate (5)
Sn-glycero-3-Phosphocholine (5)
N-Formimino-L-glutamate (5)
L-Aspartate (5)
L-Citrulline (5)
N-Acetyl-D-glucosamine (5)
L-Cystine (5)
D-Glucose (5)
Diacetyl (5)
Uracil (5)

First Public Date

2013 (528)
2014 (521)
2025 (215)
2024 (214)
2021 (178)
2022 (177)
2020 (174)
2023 (171)
2018 (165)
2026 (160)
2017 (120)
2019 (117)
2015 (117)
2016 (107)
2010 (1)

Modelling Approach

Ordinary differential equation model (1)

Study status

Active, not recruiting (1)
Recruiting (1)

Lab affiliation

University Clinic for Poultry and Fish Medicine, University of Veterinary Medicine, Vienna, Austria (9)
Faculty of Biology, Technion (2)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (2)
LPCV/EDY-IRIG-CEA Grenoble 17 av des martyrs 38100 France (1)
Laboratorio de Microbiología, Departamento de Bioquímica y Biología Molecular, Facultad de Ciencias Químicas y Farmacéuticas, Universidad de Chile, Santiago, Chile. (1)
Universite Laval-CHU de Quebec Research Center (1)
University of California, Davis, CA, USA (1)
Drug Discovery and Evaluation Unit, Center for Research of Pathogenicity and Virulence of Parasites, BIOCEV, Charles University in Prague (1)
Population Health and Immunity Division, Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC, Australia Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Melbourne, VIC, Australia (1)
Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Tartu, Estonia (1)
Department of Parasitology, Institute of Biomedical Sciences, University of Sao Paulo (1)
Instituto de Biofísica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro, Brazil and UNIGRANRIO-Universidade do Grande Rio, Caxias, Rio de Janeiro-Brazil (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås, Norway (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432,Ås, Norway (1)
Carlos Chagas Institute, Fiocruz Parana, Brazil (1)
Laboratory of Toxinology, Oswaldo Cruz Foundation (FIOCRUZ), Rio de Janeiro, RJ, Brazil (1)
Department of Biochemistry, University of Cambridge, UK (1)
Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Haifa, Israel (1)
Unidad de Biomedicina Facultad de Estudios Superiores Iztacala Universidad Nacional Autónoma de México (1)
Université Paris Cité, CNRS, UMR7126 Epigenetics and Cell Fate, 75013 Paris, France (1)
Laboratory of Protein Chemistry - Proteomic Unit Department of Biochemistry, Institute of Chemistry,UFRJ Av. Athos da Silveira Ramos, 149, CT, Bl. A, 543, Cidade Universitária, 21941-909, Rio de Janeiro, RJ, Brazil Laboratory of Proteomics (LabProt) - LADETEC, Institute of Chemistry Av. Horácio Macedo, 1281, Polo de Química, Bl. C, Lab. 324, Cidade Universitária,21941-598, Rio de Janeiro, RJ, Brazil (1)
Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Paraná, PR, Brasil. Instituto Oswaldo Cruz, Rio de Janeiro, Brasil (1)
Functional Genomics Laboratory, Carlos Chagas Institute, Fiocruz, Curitiba, Parana, Brazil (1)
School of Health and Life Sciences, Teesside University, UK (1)
Centro de Investigación y Desarrollo en Inmunología y Enfermedades Infecciosas (CIDIE), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET)/Universidad Católica de Córdoba (UCC). Córdoba, Argentina. Facultad de Ciencias de la Salud, Universidad Católica de Córdoba (UCC). Córdoba, Argentina. (1)
Institute of Microbiology, Ernst-Moritz-Arndt University Greifswald, 17489 Greifswald, Germany (1)
Academia Sinica (1)
EDyP (1)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (1)
Proteomics Core Facility, Biozentrum, University of Basel, Switzerland (1)

Keyword

Intestinal helminths; protozoan infections; (1)
Colorectal cancer; chemotherapy; cancer pathogenesis; (1)

IsPrivate

False (1)

Classification

protozoa (2677)
fungi (2)
bacteria (2)

Modification

2x(15)N labeled L-lysine (1)

Study type

Transcription profiling by array (35)
RNA-seq of coding RNA (20)
RNA-seq of coding RNA from single cells (7)
Unknown experiment type (5)
DNA-seq (4)
Comparative genomic hybridization by array (3)
RNA-seq of total RNA (3)
RNA-seq of non coding RNA (3)
ChIP-chip by tiling array (2)
Observational patient registry (2)
RIP-chip by array (1)
Transcription profiling by tiling array (1)
Other (1)

Release Date

2022 (205)
2021 (180)
2023 (176)
2025 (159)
2020 (150)
2024 (146)
2019 (120)
2018 (117)
2017 (98)
2016 (84)
2015 (78)
2011 (64)
2013 (63)
2012 (62)
2014 (60)
2010 (56)
2009 (34)
2008 (31)
2026 (26)
2007 (23)
2005 (23)
2006 (22)
2004 (11)
2001 (10)
2003 (9)
2002 (7)
1998 (6)
2000 (4)
1999 (2)
1997 (1)

Location

France (1)

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uncultured rumen protozoa

Rumen protozoa community

PRJNA377917 | ENA

Protozoa in forest soils

Protozoa in forest soils Metagenome

PRJNA1322040 | ENA

Yellow River protozoa

Yellow River protozoa Raw sequence reads

PRJNA779859 | ENA

Systematic discovery of bacterial symbionts in rumen ciliate protozoa

Detection of bacterial symbionts associated to ruminal protozoa

PRJEB101973 | ENA

Free-living protozoa and Legionella spp. coexistence and bacterial diversity in drinking water systems in apartment houses and hotels

Protozoa 18S in Latvian water supply 2019-2021

PRJEB83583 | ENA

bovine gut metagenome strain:bacteria, protozoa and fungi

bovine gut metagenome strain:bacteria, protozoa and fungi Metagenome

PRJNA338105 | ENA

Pyrosequencing data for rumen bacteria, archaea, and protozoa. Raw sequence reads

3-NOP pyrosequencing data for rumen bacteria, archaea, and protozoa (Angus long-term)

PRJNA1150246 | ENA

Nonsense-mediated mRNA decay in Tetrahymena is EJC independent and requires a protozoa-specific nuclease

Nonsense-mediated mRNA decay (NMD) is essential for removing premature termination codon (PTC)-containing transcripts from cells. Studying the NMD pathway in model organisms can help to elucidate the NMD mechanism of humans and improves our understanding of how this biologically important process ha...

ORGANISM(S): Tetrahymena thermophila

2017-07-17 | GSE90899 | GEO

Rumen protozoa

PRJNA1005036 | ENA

bovine gut metagenome

Prokaryotes-Protozoa-Associated

PRJNA1284107 | ENA

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