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TranscriptomicsWhole-genome Haplotype Reconstruction using Proximity-ligation and Shotgun Sequencing
Rapid advances in high-throughput DNA sequencing technologies are accelerating the pace of research into personalized medicine. While methods for variant discovery and genotyping from whole genome sequencing (WGS) datasets have been well established, linking variants together into a single haplotype...
ORGANISM(S): Homo sapiens 
2013-11-03 | E-GEOD-48592 | biostudies-arrayexpress
TranscriptomicsIn vivo proximity labeling and sequencing (IPL-seq) for SNRPN70 in 293T-Rex
This proof-of-principle experiment was designed to demonstrate the feasibility of proximity labeling for RNAM-bM-^@M-^Sprotein interactions IPL-seq on 293T-Rex expressing MSA-SNRPN70 (sample) or NFH-SNRPN70 (control)
ORGANISM(S): Homo sapiens 
2014-10-24 | E-GEOD-55370 | biostudies-arrayexpress
GenomicsOff-the-shelf proximity labeling
Off-the-shelf proximity labeling
PRJNA716256 | ENA
GenomicsBioluminescence-activated proximity labeling for spatial multi-omics
Bioluminescence-activated proximity labeling for spatial multi-omics
PRJNA1154663 | ENA
GenomicsRNA proximity labeling in log phase Caulobacter crescentus NA1000
RNA proximity labeling in log phase Caulobacter crescentus NA1000
PRJNA1266958 | ENA
GenomicsProximity of oligodendrocytes remodels astrocytes' transcriptome
Proximity of oligodendrocytes remodels astrocytes' transcriptome
PRJNA429458 | ENA
ProteomicsProximity proteomics reveals UCH-L1 as an essentialregulator of NLRP3-mediated IL-1β production in humanmacrophages and microglia
Activation of the NACHT, LRR family pyrin domain containing 3 (NLRP3) inflammasome complex is an essential innate immune signalling mechanism. To reveal how NLRP3 inflammasome assembly and activation are controlled, in particular by components of the ubiquitin system, proximity labelling, affinity p...
ORGANISM(S): Homo sapiens (Human) 
2024-04-24 | PXD045862 | Pride
Affinity purification-mass spectrometry Apex2 proximity labelling Nlrp3 inflammasome 
ProteomicsEmploying Expression-Matched Controls Enables High Confidence Proximity-Based Interactome Classification (Dataset 5)
Proximity labeling approaches have been widely utilized to define protein interactomes. Due to the inherent promiscuity of proximity labeling using TurboID-based approaches, identification and adoption of appropriate labeling controls is a pivotal step to mitigate background interference and enhance...
ORGANISM(S): Homo sapiens (Human) 
2025-07-14 | PXD061564 | Pride
Proximity labeling proteomics Turboid expression Control Background protein Interacting protein identification 
ProteomicsEmploying Expression-Matched Controls Enables High Confidence Proximity-Based Interactome Classification (Dataset 6)
Proximity labeling approaches have been widely utilized to define protein interactomes. Due to the inherent promiscuity of proximity labeling using TurboID-based approaches, identification and adoption of appropriate labeling controls is a pivotal step to mitigate background interference and enhance...
ORGANISM(S): Homo sapiens (Human) 
2025-07-14 | PXD061540 | Pride
Proximity labeling proteomics Turboid expression Control Background protein Interacting protein identification 
ProteomicsEmploying Expression-Matched Controls Enables High Confidence Proximity-Based Interactome Classification (Dataset 4)
Proximity labeling approaches have been widely utilized to define protein interactomes. Due to the inherent promiscuity of proximity labeling using TurboID-based approaches, identification and adoption of appropriate labeling controls is a pivotal step to mitigate background interference and enhance...
ORGANISM(S): Homo sapiens (Human) 
2025-07-14 | PXD061566 | Pride
Proximity labeling proteomics Turboid expression Control Background protein Interacting protein identification 
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