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Unknown
(29578)
Transcriptomics
(1747)
Genomics
(1071)
Proteomics
(536)
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Other
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Models
(11)
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(9)
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(4)
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(2)
Organisms
Homo sapiens
(1105)
Mus musculus
(558)
Drosophila melanogaster
(68)
Rattus norvegicus
(50)
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(48)
Arabidopsis thaliana
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synthetic construct
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(3)
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(3)
Methanobrevibacter smithii ATCC 35061
(3)
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(3)
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(2)
Trichoderma reesei QM6a
(2)
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(2)
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(1)
Oryctolagus cuniculus
(1)
Organisms
Homo sapiens
(130)
Mus musculus
(120)
Methanococcus voltae PS
(13)
Rattus norvegicus
(9)
Vitis vinifera
(7)
Danio rerio
(7)
plastic metagenome
(4)
Populus deltoides
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(4)
gut metagenome
(4)
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(4)
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unidentified
(4)
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(3)
zooplankton metagenome
(3)
Drosophila melanogaster
(3)
Staphylococcus aureus
(3)
Cucumis sativus
(3)
soil metagenome
(3)
Methanobrevibacter smithii ATCC 35061
(2)
Azospira oryzae PS
(2)
Aphis gossypii
(2)
Pseudomonas syringae pv. actinidiae
(2)
Cereibacter sphaeroides
(2)
Solanum lycopersicum
(2)
Bacteria
(2)
marine metagenome
(2)
Gossypium hirsutum
(2)
Solanum tuberosum
(2)
root metagenome
(2)
Repository
biostudies-arrayexpress
(1733)
ENA
(750)
pride
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geo
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MetabolomicsWorkbench
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MetaboLights
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MassIVE
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(33)
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(30)
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(4)
GPMDB
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dbGaP
(2)
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EVA
(1)
NODE
(1)
PeptideAtlas
(1)
Tissue
Blood
(63)
Cultured cells
(32)
Liver
(17)
Eye tissue
(15)
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(13)
Muscle
(13)
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(10)
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(4)
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(2)
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(2)
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(2)
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(1)
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(1)
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(1)
Epididymal fat
(1)
Disease
Normal
(10)
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(10)
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(4)
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(4)
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(3)
Central nervous system cancer
(2)
Acute myeloid leukemia
(2)
Alzheimer's disease
(2)
Bacterial infectious disease
(1)
Astrocytomas
(1)
Alopecia
(1)
Breast Carcinoma
(1)
Burkitt's lymphoma
(1)
N/A (culture-derived)
(1)
2h after infection with wildtype Streptococcus pyogenes
(1)
Benign Prostatic Hyperplasia
(1)
Ductal breast cancer
(1)
Colorectal cancer
(1)
Tuberculosis
(1)
Melanoma
(1)
Bordetella pertussis inoculated
(1)
Cardiac hypertrophy
(1)
Cancer
(1)
Breast carcinoma
(1)
Multiple myeloma
(1)
Metastatic colorectal cancer mCRC
(1)
Lymphoma
(1)
Carcinoma
(1)
Colorectal Cancer
(1)
Stomach and colorectal cancer
(1)
Technology Type
Mass Spectrometry
(585)
ESI
(222)
Shotgun proteomics
(182)
Mass spectrometry
(107)
Bottom-up proteomics
(85)
Data-dependent acquisition
(39)
Affinity purification coupled with mass spectrometry proteomics
(30)
Mass spectrometry assay
(29)
Gel-based experiment
(24)
Data-independent acquisition
(21)
Top-down proteomics
(15)
Illumina HiSeq 2000
(13)
EI
(13)
SWATH MS
(9)
Illumina 15K
(8)
Illumina Genome Analyzer II
(7)
Chemical cross-linking coupled with mass spectrometry proteomics
(6)
SRM/MRM
(6)
All-ion fragmentation
(5)
MSE
(4)
HDMSE
(3)
Illumina HiSeq 2000, Illumina Genome Analyzer II
(2)
Illumina Genome Analyzer II, Illumina HiSeq 2000
(2)
Other
(2)
DiaPASEF
(2)
ILLUMINA, Illumina HiSeq 2500
(1)
Illumina HiSeq 2500
(1)
Illumina HumanExome-12v1_A-GenCall, zCall, GenoSNP, - Illuminus
(1)
Illumina HiSeq 2000, Illumina Genome Analyzer II, ILLUMINA
(1)
Multiple
(1)
Instrument Platform
Illumina NovaSeq 6000
(25)
NextSeq 500
(21)
Illumina HiSeq 2000
(20)
Illumina HiSeq 2500
(17)
Illumina HiSeq 4000
(13)
Illumina Genome Analyzer IIx
(6)
AB SOLiD 4 System
(4)
Illumina Genome Analyzer II
(4)
NextSeq 2000
(4)
Illumina HiSeq 3000
(3)
Illumina HiScanSQ
(2)
10x Genomics Chromium Controller
(2)
Illumina HiSeq 1000
(2)
Illumina MiSeq
(2)
NextSeq 550
(2)
KAPA EvoPrep Kit
(1)
Nanodrop 2000c spectrophotometer
(1)
Sequel II
(1)
Nanopore sequencing
(1)
Wollenberger tongs
(1)
PromethION
(1)
OpenArray NT cycler
(1)
PCR Applied Biosystems
(1)
Qubit
(1)
FACS Aria II
(1)
Solexa 2G Genome Analyzer
(1)
GeneChip Fluidics Station 450
(1)
GeneChip Scanner 3000
(1)
Agilent Hybridization Oven.
(1)
Agilent G2565BA scanner.
(1)
Publication Date
2013
(246)
2014
(226)
2010
(219)
2012
(206)
2015
(194)
2011
(184)
2025
(165)
2016
(151)
2022
(124)
2024
(121)
2026
(107)
2021
(95)
2008
(95)
2023
(92)
2009
(86)
2020
(84)
2018
(60)
2019
(56)
2017
(52)
2007
(44)
2005
(17)
2006
(15)
2004
(7)
2027
(2)
UNIPROT ID/AC
1433A_SOYBN
(2)
P04003
(1)
Q15485
(1)
O00187
(1)
P01024
(1)
P06681
(1)
P0C0L4
(1)
P0C0L5
(1)
P02741
(1)
P03952
(1)
P07204
(1)
P00488
(1)
P05160
(1)
P00747
(1)
P02679
(1)
P02671
(1)
P02675
(1)
P00748
(1)
P03951
(1)
P07225
(1)
P04070
(1)
P01008
(1)
P10646
(1)
P12259
(1)
P00451
(1)
P00740
(1)
P00742
(1)
P08709
(1)
P13726
(1)
P00734
(1)
ENSEMBL ID
ENSMUSG00000027651
(1)
ENSMUSP00000141097
(1)
CHEBI ID
CHEBI:18237
(25)
CHEBI:30769
(25)
CHEBI:6650
(23)
CHEBI:28044
(23)
CHEBI:17822
(21)
CHEBI:15741
(21)
CHEBI:16811
(20)
CHEBI:18257
(20)
CHEBI:16335
(20)
CHEBI:29016
(20)
CHEBI:15756
(20)
CHEBI:33508
(19)
CHEBI:26271
(19)
CHEBI:22660
(19)
CHEBI:25017
(19)
CHEBI:7916
(19)
CHEBI:16704
(19)
CHEBI:18132
(12)
CHEBI:506227
(11)
CHEBI:15354
(11)
CHEBI:29108
(2)
CHEBI:72738
(1)
CHEBI:10033
(1)
CHEBI:28304
(1)
CHEBI:28384
(1)
CHEBI:17489
(1)
CHEBI:17553
(1)
CHEBI:16038
(1)
CHEBI:49183
(1)
CHEBI:16000
(1)
Metabolite Name
Uridine
(14)
Ornithine
(11)
Adenine
(11)
Creatine
(11)
Azelaic acid
(10)
Cytidine
(10)
Xanthine
(10)
Hypoxanthine
(10)
UDP-glucuronate
(9)
Methionine
(9)
Taurine
(9)
Xanthosine
(9)
Serine
(9)
Phenylalanine
(9)
Glucose
(9)
Citrate
(9)
Inosine
(9)
Glutamate
(8)
Cholesterol
(8)
Citric acid
(8)
Arginine
(8)
Adenosine
(8)
Succinate
(8)
Proline
(8)
L-Glutamine
(8)
Tryptophan
(8)
UDP-glucose
(7)
Malate
(7)
Histidine
(7)
Leucine
(7)
First Public Date
2025
(148)
2026
(123)
2024
(90)
2014
(67)
2023
(65)
2022
(63)
2021
(47)
2020
(36)
2018
(29)
2019
(25)
2017
(19)
2013
(15)
2015
(14)
2016
(9)
Modelling Approach
Ordinary differential equation model
(5)
Study status
Completed
(5)
Active, not recruiting
(2)
Not provided
(1)
Recruiting
(1)
Lab affiliation
Department of Neurology and Neurological Sciences, Stanford University, Stanford, CA, USA
(6)
Molecular Genetics, RPTU Kaiserslautern, Germany
(5)
University of Victoria
(5)
Proteomics, Leibniz-Institut für analytische Wissenschaften -ISAS - e.V., Germany
(4)
Center of Human and Molecular Biology (ZHMB), Saarland University School of Medicine, Homburg, Germany
(3)
EDyP
(3)
Federal University of Goias
(3)
Moffitt Cancer Center Tampa, FL, USA
(3)
Bioanalytics, Leibnizinstitut für analytische Wissenschaften-ISAS-e.V., Germany
(2)
Brigham Young University
(2)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France
(2)
CSIR-CCMB
(2)
CSIR-CCMB, Hyderabad, India
(2)
Department of Biochemistry, University of Washington, Seattle, WA, USA
(2)
Department of Chemistry, Stanford University
(2)
Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio, USA
(2)
Department of Pharmaceutics, School of Pharmaceutical Sciences of Wenzhou Medical University
(2)
Division of Gastroenterology and Hepatology, School of Medicine, University of Colorado Anschutz Medical Campus,Colorado, USA
(2)
Immunology Research Center, National Health Research Institutes
(2)
Molecular Plant Biology, University of Turku
(2)
Pacific Northwest National Laboratory
(2)
Proteomics
(2)
University of North Carolina at Greensboro
(2)
1 Dept Neuroscience, Imaging and Clinical Sciences, “G. d’Annunzio” University Chieti-Pescara, Italy 2 Interuniversity Institute of Myology, Italy; lorenzo.marramiero@unich.it; es.difilippo@unich.it; tiziana@pietrangelo@unich.it; stefania.fulle@unich.it; rosa.mancinelli@unich.it 3 Functional Evaluation Laboratory, “G. d’Annunzio” University Chieti-Pescara, Italy
(1)
1. Cancer Signalling Research Group, School of Biomedical Sciences and Pharmacy, College of Health, Medicine and Wellbeing, University of Newcastle, Callaghan, NSW, AUSTRALIA 2. Precision Medicine Research Program, Hunter Medical Research Institute, New Lambton Heights, NSW, AUSTRALIA 3. Paediatric Program, Mark Hughes Foundation Centre for Brain Cancer Research, College of Health, Medicine, and Wellbeing, Callaghan, NSW, AUSTRALIA
(1)
1Center for Cardiovascular Regeneration, Department of Cardiovascular Sciences, Houston Methodist Research Institute. Houston Methodist, 6550 Fannin Street, Texas 77030, USA.
(1)
1School of Biomedical Sciences and Pharmacy, College of Health, Medicine and Wellbeing, University of Newcastle, NSW, 2308, Australia 2 Precision Medicine Research Program, Hunter Medical Research Institute, New Lambton Heights, NSW, 2305, Australia
(1)
Aging Institute of UPMC Department of Cell Biology University of Pittsburgh School of Medicine Bridgeside Point I Room 457 100 Technology Dr. Pittsburgh, PA 15219
(1)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Key Laboratory of Saline-alkali Vegetation Ecology Restoration in Oil Field, Ministry of Education, Harbin 150040, China
(1)
All India Institute of Medical Sciences, New Delhi, India
(1)
Tags
pathogen
(11)
xref:PubMed:40562930
(9)
pathogen:bacterium
(9)
xref:PubMed:41339717
(5)
xref:PubMed:40834858
(4)
xref:PubMed:40866704
(4)
xref:PubMed:29381239
(3)
xref:PubMed:39166492
(3)
xref:PubMed:42602118
(3)
xref:PubMed:25333715
(3)
xref:PubMed:36092919
(2)
xref:PubMed:16030219
(2)
xref:PubMed:34462274
(2)
xref:PubMed:32092251
(2)
xref:PubMed:35772013
(2)
xref:PubMed:35137163
(2)
xref:PubMed:36055199
(2)
xref:PubMed:34983631
(2)
xref:PubMed:32238941
(2)
xref:PubMed:30598105
(2)
xref:PubMed:41882354
(2)
xref:PubMed:39189770
(2)
xref:PubMed:37400539
(2)
xref:PubMed:41980770
(2)
xref:PubMed:39526566
(2)
xref:PubMed:41444368
(2)
xref:PubMed:20139965
(2)
xref:ArrayExpress:E-MTAB-2286
(1)
xref:ArrayExpress:E-MTAB-2234
(1)
xref:PubMed:34823256
(1)
Keyword
Oxaliplatin
(3)
Leucovorin
(2)
Bevacizumab
(2)
Fluorouracil
(2)
Levoleucovorin
(2)
PR1
(1)
Biomarkers (BRAF, IGF1P/MMp7,PI3K-PTEN)
(1)
OXALIPLATINO
(1)
Acido levo-folinico (L-Leucovorin)
(1)
5 Fluorouracile
(1)
Fluorouracilo
(1)
Bortezomib
(1)
AIDS-related peripheral/systemic lymphoma
(1)
AIDS-related primary CNS lymphoma
(1)
Primary central nervous system non-Hodgkin lymphoma
(1)
Small intestine lymphoma
(1)
Stage IV adult Burkitt lymphoma
(1)
Stage IV adult diffuse large cell lymphoma
(1)
Stage IV adult diffuse mixed cell lymphoma
(1)
Stage IV adult diffuse small cleaved cell lymphoma
(1)
Stage IV adult immunoblastic large cell lymphoma
(1)
Stage IV adult lymphoblastic lymphoma
(1)
Recurrent adult Burkitt lymphoma
(1)
Recurrent adult diffuse large cell lymphoma
(1)
Recurrent adult diffuse mixed cell lymphoma
(1)
Recurrent adult diffuse small cleaved cell lymphoma
(1)
Recurrent adult Hodgkin lymphoma
(1)
Recurrent adult immunoblastic large cell lymphoma
(1)
Recurrent adult lymphoblastic lymphoma
(1)
Recurrent cutaneous T-cell non-Hodgkin lymphoma
(1)
IsPrivate
False
(7)
Classification
bacteria
(9)
fungi
(1)
viruses
(1)
Modification
15.994915
(2)
2x(15)N labeled L-lysine
(2)
4x(15)N labeled L-arginine
(2)
57.021464
(2)
Not available
(2)
-17.026549
(1)
-18.010565
(1)
42.010565
(1)
Study type
Transcription profiling by array
(1004)
RNA-seq of coding RNA
(198)
ChIP-seq
(153)
Methylation profiling by array
(69)
Unknown experiment type
(39)
Comparative genomic hybridization by array
(36)
Other
(32)
RNA-seq of non coding RNA
(29)
ChIP-chip by tiling array
(26)
Transcription profiling by tiling array
(18)
ChIP-chip by array
(15)
Methylation profiling by high throughput sequencing
(15)
RNA-seq of coding RNA from single cells
(13)
MicroRNA profiling by array
(10)
RNA-seq of total RNA
(8)
RNAi profiling by array
(7)
Genotyping by array
(6)
DNA-seq
(6)
Animal - High-throughput sequencing
(5)
Transcription profiling by RT-PCR
(5)
RIP-seq
(5)
Transcription profiling by SAGE
(4)
High-throughput sequencing
(3)
Cell line - High-throughput sequencing
(3)
CUT&RUN
(3)
Baseline
(2)
Animal - One-color microarray
(2)
Bisulfite-seq
(2)
Transcription profiling by high throughput sequencing
(1)
MNase-seq
(1)
Release Date
2022
(3288)
2021
(2960)
2023
(2955)
2025
(2855)
2024
(2527)
2020
(2441)
2019
(1997)
2018
(1715)
2017
(1466)
2016
(1393)
2015
(1266)
2014
(1182)
2013
(938)
2012
(869)
2011
(711)
2010
(701)
2009
(451)
2008
(404)
2026
(375)
2007
(217)
2006
(144)
2005
(117)
2004
(83)
2003
(64)
2002
(50)
2000
(36)
2001
(31)
1998
(30)
1999
(28)
1997
(9)
Location
Italy
(2)
United States
(2)
India
(1)
China
(1)
Spain
(1)
Australia
(1)
Japan
(1)
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Methanococcus voltae PS strain:PS
Methanococcus voltae PS transcriptome - Low-3-PS
PRJNA1387552
|
ENA
Cite
Methanococcus voltae PS strain:PS
Methanococcus voltae PS transcriptome - H37-4-PS
PRJNA1387544
|
ENA
Cite
Methanococcus voltae PS strain:PS
Methanococcus voltae PS transcriptome - H25-2-PS
PRJNA1387545
|
ENA
Cite
Methanococcus voltae PS strain:PS
Methanococcus voltae PS transcriptome - Low-4-PS
PRJNA1387553
|
ENA
Cite
Methanococcus voltae PS strain:PS
Methanococcus voltae PS transcriptome - H37-2-PS
PRJNA1387540
|
ENA
Cite
Methanococcus voltae PS strain:PS
Methanococcus voltae PS transcriptome - H37-1-PS
PRJNA1387618
|
ENA
Cite
Methanococcus voltae PS strain:PS
Methanococcus voltae PS transcriptome - H25-1-PS
PRJNA1387537
|
ENA
Cite
Methanococcus voltae PS strain:PS
Methanococcus voltae PS transcriptome - H37-3-PS
PRJNA1387542
|
ENA
Cite
Methanococcus voltae PS strain:PS
Methanococcus voltae PS transcriptome - H25-3-PS
PRJNA1387546
|
ENA
Cite
Methanococcus voltae PS strain:PS
Methanococcus voltae PS transcriptome - H25-4-PS
PRJNA1387547
|
ENA
Cite
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