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TranscriptomicsGenomic analyses of Loc1, Puf6, and Khd1 binding patterns and transcriptional effects
We performed ChIP-chip of Loc1, Puf6, and Khd1 in order to determine the genetic loci they bind. We repeated these experiments with lighter fixation in the presence and absence of RNase to determine whether these associations are via DNA or RNA (analysis shows that they associate with the loci via ...
ORGANISM(S): Saccharomyces cerevisiae 
2014-01-01 | E-GEOD-34245 | biostudies-arrayexpress
ProteomicsPuf6 ushers correct rRNA compaction during ribosome assembly
Chemical cross-linking coupled to mass spectrometry was used to study the complex between the nucleolar factor, Puf6, and the yeast 60S ribosome. Disuccinimidyl suberate (DSS) was used as the cross-linking reagent.
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2021-06-28 | PXD024131 | Pride
Chemical cross-linking  dss  structural proteomics  ribosome  ribosomal assembly 
GenomicsPuf6 primes nuclear export of 60S pre-ribosomes at low temperature
Puf6 primes nuclear export of 60S pre-ribosomes at low temperature
PRJNA730580 | ENA
TranscriptomicsGenome-wide analyses of Loc1, Puf6, and Khd1
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Saccharomyces cerevisiae 
2014-01-01 | E-GEOD-34534 | biostudies-arrayexpress
OtherPuf6 primes nuclear export of 60S pre-ribosomes at low temperature
Puf6 contributes to biogenesis of the large subunit in yeast. UV-crosslinking (CRAC) was used to determine binding sites of Puf6 on RNA.
ORGANISM(S): Saccharomyces cerevisiae 
2021-06-25 | GSE174587 | GEO
UnknownPuf6 primes 60S pre-ribosome nuclear export at low temperature.
Not available
S-EPMC8338941 | biostudies-literature
UnknownCo-transcriptional recruitment of Puf6 by She2 couples translational repression to mRNA localization.
Not available
S-EPMC4117797 | biostudies-literature
TranscriptomicsGenomic analyses of Loc1, Puf6, and Khd1 binding patterns and transcriptional effects
We performed ChIP-chip of Loc1, Puf6, and Khd1 in order to determine the genetic loci they bind. We repeated these experiments with lighter fixation in the presence and absence of RNase to determine whether these associations are via DNA or RNA (analysis shows that they associate with the loci via t...
ORGANISM(S): Saccharomyces cerevisiae 
2014-01-01 | GSE34245 | GEO
UnknownThe Pumilio-domain protein PUF6 contributes to SIDER2 retroposon-mediated mRNA decay in Leishmania.
Not available
S-EPMC5689007 | biostudies-literature
GenomicsSaccharomyces cerevisiae
Genomic analyses of Loc1, Puf6, and Khd1 binding patterns and transcriptional effects
PRJNA156543 | ENA
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