Pyrus - OmicsDI

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Genomics (526)
Unknown (467)
Transcriptomics (165)
Metabolomics (18)
Proteomics (14)
Methylation profiling (2)

Organisms

Drosophila melanogaster (211)
Malus domestica (25)
Pyrus pyrifolia (18)
Pyrus communis (13)
Drosophila simulans (7)
Pyrus x bretschneideri (7)
Drosophila yakuba (6)
Erwinia amylovora (6)
Mus musculus (6)
Drosophila pseudoobscura (4)
Homo sapiens (4)
Solanum lycopersicum (3)
Rattus norvegicus (2)
Pyrus hybrid cultivar (2)
Prunus persica (2)
Cucumis melo (2)
unclassified Malus (1)
Bacteroides xylanisolvens (1)
Drosophila mettleri (1)
Acromyrmex echinatior (1)
Amphimedon queenslandica (1)
Rosa hybrid cultivar (1)
Pachycladon exile (1)
Drosophila ananassae (1)
Drosophila virilis (1)
Nicotiana benthamiana (1)
Bos taurus (1)
Escherichia coli (1)
Sus scrofa (1)
Pyrus betulifolia (1)

Organisms

Pyrus pyrifolia (69)
Pyrus x bretschneideri (65)
Pyrus communis (45)
Pyrus betulifolia (21)
Pyrus (21)
Pyrus ussuriensis (10)
Pyrus sinkiangensis (8)
Pyrus hybrid cultivar (5)
Pyrus calleryana (5)
Pyrus pyrifolia var. culta (5)
Pyrus hopeiensis (4)
Pyrus sp. MRB-2025 (3)
Pyrus sp. DS-2025 (3)
Pyrus trilocularis (2)
Pyrus ussuriensis x Pyrus communis (2)
Pyrus sp. (2)
Pyrus georgica (2)
Venturia pyrina ICMP 11032 (1)
Pyrus boissieriana (1)
Pyrus hybrid rootstock (1)
Pyrus sp. GL-2026 (1)
Pyrus x bretschneideri x Pyrus pyrifolia (1)
Pyrus hondoensis (1)
Malus domestica x Pyrus x bretschneideri (1)
Maleae (1)
Pyrus armeniacifolia (1)
Dickeya fangzhongdai (1)
Sorbus aucuparia subsp. pohuashanensis (1)
Stemphylium vesicarium (1)
Rahnella aceris (1)

Repository

ENA (365)
biostudies-arrayexpress (295)
geo (32)
MetaboLights (16)
MassIVE (6)
iProX (4)
pride (4)
EVA (1)
GNPS (1)
MetabolomicsWorkbench (1)

Tissue

Plant (1)
Abscission zone (1)
Style (1)
Whole body (1)

Disease

Normal (2)

Technology Type

Mass spectrometry (10)
Mass spectrometry assay (6)
Mass Spectrometry (5)
Shotgun proteomics (3)
NMR spectroscopy (1)
ESI (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 3000 (8)
Illumina HiSeq 4000 (5)
Liquid Chromatography MS - positive - reverse phase (5)
Illumina NovaSeq 6000 (4)
Illumina HiSeq 2000 (4)
Liquid Chromatography MS - positive - reverse-phase (4)
Liquid Chromatography MS - negative - reverse phase (4)
NextSeq 500 (3)
Liquid Chromatography MS - negative - reverse-phase (3)
Illumina MiSeq (2)
NextSeq 550 (2)
Illumina HiSeq 2500 (2)
Q-Tof ultima (2)
Liquid Chromatography MS - negative - hilic (2)
Sony MA-900 cell sorter (1)
10X Genomics Chromium Controller (1)
NextSeq500 (1)
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Illumina Genome Analyzer IIx (1)
Illumina NovaSeq X (1)
Illumina (1)
LCMS-IT-TOF (1)
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MicrOTOF-Q III (1)
Orbitrap Fusion (1)
Q Exactive Plus (1)
Waters xevo (1)
LECO Pegasus 4D GCxGC-TOF-MS (1)
LTQ XL (Thermo Scientific) (1)

Publication Date

2011 (75)
2010 (63)
2013 (49)
2022 (22)
2012 (20)
2014 (19)
2020 (14)
2015 (12)
2016 (11)
2021 (10)
2023 (9)
2017 (9)
2018 (8)
2009 (8)
2026 (7)
2024 (6)
2025 (5)
2019 (4)
2008 (2)
2007 (2)
2006 (1)
2005 (1)

CHEBI ID

CHEBI:70976 (3)
CHEBI:18089 (3)
CHEBI:28299 (2)
CHEBI:75632 (2)
CHEBI:75643 (2)
CHEBI:28885 (2)
CHEBI:168901 (2)
CHEBI:168647 (2)
CHEBI:165782 (2)
CHEBI:87586 (2)
CHEBI:168687 (2)
CHEBI:81140 (2)
CHEBI:70478 (2)
CHEBI:15421 (2)
CHEBI:168278 (2)
CHEBI:168210 (2)
CHEBI:77168 (2)
CHEBI:79190 (2)
CHEBI:136629 (2)
CHEBI:168104 (2)
CHEBI:87335 (2)
CHEBI:168175 (2)
CHEBI:168589 (2)
CHEBI:167579 (2)
CHEBI:168243 (2)
CHEBI:87542 (2)
CHEBI:62898 (2)
CHEBI:37417 (2)
CHEBI:166521 (2)
CHEBI:138775 (2)

Metabolite Name

Phloretin (4)
Procyanidin B2 (3)
Procyanidin B1 (3)
Myricitrin (3)
(S)-9-Hydroxy-10-undecenoic acid (3)
Isovitexin (3)
Xi-7-Octen-2-ol (3)
Succinyladenosine (3)
Sphingosine (3)
Phytosphingosine (3)
Undecanedioic acid (3)
Jasmonic acid (3)
Tauroursodeoxycholic acid (3)
Oleamide (3)
Adenosine (3)
N-Acetyl-L-phenylalanine (3)
Azelaic acid (3)
Zearalenone (3)
Glycerophosphocholine (3)
Okanin 4'-(6''-p-coumarylglucoside) (2)
(E)-3-Nonen-1-ol (2)
1alpha,25-dihydroxy-20-epivitamin D2 / 1alpha,25-dihydroxy-20-epiergocalciferol (2)
Stoloniferone E (2)
Hexyl butyrate (2)
Hexyl octanoate (2)
6-Hydroxytricetin 6,4',5'-trimethyl eter 3'-rhamnoside (2)
Genistein 4'-O-glucoside (2)
Phloridzin (2)
Myricetin 3-alpha-L-arabinofuranoside (2)
Epigallocatechin 3-O-p-coumarate (2)

First Public Date

2025 (55)
2024 (50)
2023 (34)
2026 (30)
2022 (29)
2019 (26)
2020 (23)
2021 (22)
2015 (22)
2018 (19)
2016 (18)
2014 (14)
2013 (12)
2017 (11)

Classification

bacteria (3)

Study type

ChIP-seq (153)
Transcription profiling by array (60)
RNA-seq of coding RNA (38)
ChIP-chip by tiling array (10)
RNA-seq of non coding RNA (9)
Comparative genomic hybridization by array (5)
DNA-seq (4)
Animal - High-throughput sequencing (3)
Unknown experiment type (2)
ChIP-chip by array (2)
Hi-C (2)
Animal - One-color microarray (1)
Genotyping by array (1)
MicroRNA profiling by high throughput sequencing (1)
4C (1)
Other (1)
CUT&RUN (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2011 (76)
2022 (75)
2021 (63)
2010 (63)
2013 (55)
2024 (48)
2020 (48)
2023 (43)
2025 (43)
2019 (39)
2018 (39)
2014 (35)
2016 (31)
2017 (30)
2015 (25)
2012 (22)
2026 (10)
2009 (9)
2007 (3)
2008 (2)
2006 (1)
2005 (1)
1998 (1)

Lab affiliation

College of Horticulture, Nanjing Agricultural University, China (1)
James Cook University (1)
Key Laboratory of Horticultural Crop Germplasm Innovation and Utilization(Co-construction by Ministry and Province)，Institute of Horticulture，Anhui Academy of Agricultural Sciences，Hefei 230031, China (1)
La Trobe University (1)

Tags

pathogen (3)
pathogen:bacterium (3)
xref:PubMed:34802418 (1)
xref:PubMed:32257235 (1)
xref:PubMed:37107575 (1)
xref:PubMed:35216299 (1)
xref:PubMed:31368610 (1)
xref:PubMed:32220242 (1)
xref:PubMed:35741739 (1)
xref:PubMed:34066340 (1)
xref:PubMed:37954154 (1)
xref:PubMed:28620410 (1)
xref:PubMed:24965097 (1)
xref:PubMed:30900943 (1)
xref:PubMed:30854209 (1)
xref:PubMed:23149293 (1)

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Pyrus communis: 'Ercolini' cultivar vs. 'Rocha' cultivar

Transcriptional profiling of pear tree comparing a resistant/tolerant cultivar with a susceptible cultivar to the Stemphylium vesicarium fungus Rocha' pear is an economically important portuguese Pyrus communis L. cultivar very susceptible to the Stemphylium vesicarium pathogenic fungus, the brown s...

ORGANISM(S): Pyrus communis

2011-07-02 | E-GEOD-30353 | biostudies-arrayexpress

Pyrus Genome sequencing

PRJNA843887 | ENA

Pyrus Raw sequence reads

PRJNA746045 | ENA

Pyrus Raw sequence reads

PRJNA745477 | ENA

Pyrus Raw sequence reads

PRJNA829646 | ENA

Pan-genome of Pyrus (PRJCA021450)

PRJDB38336 | ENA

Pyrus Raw sequence reads

PRJNA302710 | ENA

Pyrus betulifolia cultivar:Pyrus betulaefolia

Pyrus betulifolia cultivar:Pyrus betulaefolia Raw sequence reads

PRJNA761485 | ENA

Pyrus Raw sequence reads

PRJNA1083251 | ENA

Pyrus sp. overview

PRJNA1254840 | ENA

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