Qi J J - OmicsDI

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Unknown (11090)
Proteomics (744)
Transcriptomics (144)
Metabolomics (136)
Genomics (56)
Genomic (2)
Other (2)
Multiomics (1)

Organisms

Homo sapiens (248)
Mus musculus (111)
Arabidopsis thaliana (13)
Rattus norvegicus (12)
Zea mays (6)
Apis mellifera (3)
Drosophila melanogaster (3)
Plasmodium yoelii yoelii 17XNL (3)
Neisseria meningitidis (2)
Saccharomyces cerevisiae (2)
Oryza sativa (2)
Rattus rattus (2)
Coccinella septempunctata (1)
Lonicera japonica (1)
Larix kaempferi (1)
Brassica oleracea (1)
Bean pod mottle virus (1)
Schistosoma japonicum (1)
Trichophyton rubrum (1)
Gossypium hirsutum (1)
Volvox carteri (1)
Fusobacterium nucleatum (1)
Chlamydomonas reinhardtii (1)
Oryza sativa Indica Group (1)
Streptococcus pneumoniae (1)
Oryza sativa Japonica Group (1)
Triticum aestivum (1)
Danio rerio (1)
108887 (1)
502593 (1)

Organisms

Arabidopsis thaliana (2)
Chlamydomonas reinhardtii (1)

Repository

pride (472)
biostudies-arrayexpress (154)
iProX (148)
MetaboLights (134)
PeptideAtlas (97)
EGA (43)
MassIVE (23)
jPOST (4)
ENA (3)
dbGaP (2)
GNPS (2)
GPMDB (2)

Tissue

Cell culture (114)
Digestive System (95)
Brain (32)
Epithelial cell (30)
Leaf (19)
Blood plasma (17)
Liver (16)
Permanent cell line cell (15)
Plant cell (15)
Blood cell (14)
Blood (13)
Multipotent stem cell (12)
Blood serum (11)
Bone marrow (11)
Fibroblast (10)
Lung (10)
Primary cell (8)
Blood platelet (7)
Testis (7)
Urine (7)
Cell suspension culture (6)
Macrophage (6)
Skeletal muscle (6)
Stem cell (6)
Photosynthetic cell (5)
Skin (5)
T cell (5)
Whole body (5)
B cell (4)
Male Reproductive System (2)

Disease

Disease free (13)
Colon cancer (7)
Acute leukemia (5)
Breast cancer (5)
Prostate adenocarcinoma (5)
Pancreatic ductal adenocarcinoma (4)
Brain cancer (3)
COVID-19 (3)
Cardiovascular system disease (3)
Lung adenocarcinoma (3)
Osteoarthritis (3)
Schizophrenia (3)
Type 2 diabetes mellitus (3)
Not Available (2)
Asthma (2)
Brain disease (2)
Cholangiocarcinoma (2)
Hepatocellular carcinoma (2)
Liver cancer (2)
Lymphoma (2)
Melanoma (2)
Obesity (2)
Oropharynx cancer (2)
Paranoid schizophrenia (2)
Urinary bladder cancer (2)
Hepatomegaly (1)
Alpha-1 antitrypsin deficiency (1)
Normal (1)
Alzheimer's disease (1)
Conn's syndrome (1)

Technology Type

Mass Spectrometry (472)
Shotgun proteomics (302)
Mass spectrometry (123)
Bottom-up proteomics (58)
HDMSE (46)
Affinity purification coupled with mass spectrometry proteomics (37)
Data-dependent acquisition (20)
Top-down proteomics (20)
Gel-based experiment (18)
MSE (14)
Data-independent acquisition (13)
Mass spectrometry assay (12)
SWATH MS (11)
SRM/MRM (8)
All-ion fragmentation (7)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
DiaPASEF (3)
Illumina HiSeq 2000 (2)
Immunopeptidomics (2)
Illumina HiSeq 2500, Illumina MiSeq, NextSeq 500, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (1)
Affinity proteomics (1)
Mass spectrometry imaging (1)
Metaproteomics (1)
RNA mass spectrometry (1)

Instrument Platform

LTQ Orbitrap Velos (108)
Liquid Chromatography MS - negative - reverse phase (78)
Liquid Chromatography MS - positive - reverse phase (77)
Liquid Chromatography MS - positive - hilic (12)
Gas Chromatography MS - positive (8)
Liquid Chromatography MS - negative - hilic (8)
Illumina HiSeq 2000 (5)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (5)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (5)
Q Exactive (4)
Liquid Chromatography MS - negative (4)
Liquid Chromatography MS - positive (4)
Liquid Chromatography MS - positive - reverse-phase (4)
Liquid Chromatography MS - negative - reverse-phase (4)
Orbitrap Fusion Lumos (3)
Xevo G2 QTOF (Waters) (3)
Xevo QTof MS (Waters) (3)
Liquid Chromatography MS - alternating - hilic (3)
Q Exactive HF (2)
TripleTOF 6600 (2)
Instrument (2)
Gas Chromatography MS - (2)
Liquid Chromatography Tandem MS (LC-MS/MS) (2)
G2565BA DNA microarray scanner [Agilent] (1)
BGISEQ-500 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap (1)
Orbitrap Fusion (1)
Q Exactive Plus (1)
Synapt G2-S HDMS (1)

Publication Date

2022 (128)
2014 (118)
2024 (100)
2021 (100)
2023 (83)
2020 (76)
2025 (74)
2026 (63)
2019 (62)
2018 (38)
2017 (30)
2016 (24)
2013 (22)
2015 (21)
2011 (20)
2010 (20)
2009 (19)
2012 (8)
2008 (7)
2007 (5)
2006 (2)
2004 (2)
2005 (1)

UNIPROT ID/AC

A0A024RC46 (97)
A0A087WTX5 (97)
A0A087WVW2 (97)
A0A087WXI0 (97)
A0A087WYL9 (97)
A0A087X130 (97)
A0A087X1V9 (97)
A0A0A0MS07 (97)
A0A0A0MS51 (97)
A0A0B4J1V0 (97)
A0A0C4DG89 (97)
A0AVT1 (97)
A0FGR8 (97)
A0FGR8-2 (97)
A0FGR8-6 (97)
A0M8Q6 (97)
A0N5G5 (97)
A1L0T0 (97)
A2BFH1 (97)
A2IPI2 (97)
A2IPI5 (97)
A2NB46 (97)
A2NKM6 (97)
A2NUT2 (97)
A2NXP9 (97)
A4F255 (97)
A5A3E0 (97)
A6NHL2 (97)
A6NNZ2 (97)
A8MTJ3 (97)

ENSEMBL ID

ENSG00000170477 (97)
ENSG00000229353 (49)
ENSG00000147251 (19)
ENSG00000247315 (3)
ENSG00000176092 (2)
ENSG00000214897 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:17368 (40)
CHEBI:16704 (38)
CHEBI:16566 (36)
CHEBI:16015 (36)
CHEBI:16750 (35)
CHEBI:17154 (35)
CHEBI:15891 (35)
CHEBI:15971 (35)
CHEBI:16919 (35)
CHEBI:17596 (35)
CHEBI:17895 (34)
CHEBI:17568 (33)
CHEBI:17295 (33)
CHEBI:16393 (32)
CHEBI:16467 (32)
CHEBI:30769 (32)
CHEBI:17351 (31)
CHEBI:17015 (30)
CHEBI:17203 (30)
CHEBI:18211 (30)
CHEBI:16359 (30)
CHEBI:15354 (30)
CHEBI:17748 (29)
CHEBI:55328 (29)
CHEBI:16414 (29)
CHEBI:15756 (29)
CHEBI:16235 (28)
CHEBI:15318 (28)
CHEBI:16828 (28)
CHEBI:17509 (27)

Metabolite Name

Hypoxanthine (26)
Uridine (24)
Taurine (23)
L-Arginine (22)
Citric acid (22)
Thymidine (22)
Cholic acid (21)
L-Histidine (20)
Sphinganine (20)
Xanthine (20)
L-Valine (20)
Inosine (20)
L-Proline (19)
L-Tyrosine (19)
Uracil (18)
Sphingosine (18)
Arachidonic acid (18)
Guanine (18)
Palmitic acid (18)
Guanosine (18)
Benzaldehyde (17)
Choline (17)
Deoxycholic acid (17)
L-Glutamine (17)
Adenine (17)
Uric acid (17)
Creatine (17)
Citrulline (16)
Oleic acid (16)
Linoleic acid (16)

First Public Date

2013 (3)

Modification

-17.026549 (2)
-18.010565 (2)
15.994915 (2)
42.010565 (2)
57.021464 (2)
2x(15)N labeled L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)
6x(2)H labeled dimethylated L-arginine (1)

Study type

Transcription profiling by array (88)
RNA-seq of coding RNA (29)
RNA-seq of non coding RNA (16)
ChIP-seq (7)
Unknown experiment type (3)
Comparative genomic hybridization by array (3)
Methylation profiling by high throughput sequencing (3)
Transcription profiling by RT-PCR (2)
GRO-seq (1)
RNA-seq of non coding RNA from single cells (1)
ChIP-chip by array (1)

Release Date

2025 (1706)
2022 (1553)
2024 (1355)
2023 (1341)
2021 (1149)
2020 (859)
2019 (615)
2018 (453)
2017 (445)
2016 (379)
2015 (301)
2014 (251)
2026 (245)
2013 (147)
2012 (120)
2011 (84)
2010 (77)
2009 (54)
2008 (43)
2007 (25)
2006 (17)
2004 (11)
2005 (5)
2003 (4)
1999 (2)
2002 (1)
2001 (1)
1998 (1)

Lab affiliation

Division of Cell Matrix Biology & Regenerative Medicine (L5) / Division of Cell Matrix Biology & Regenerative Medicine, University of Manchester (8)
Departamento de Bioquímica y Biología Molecular. Edificio Severo Ochoa, planta 1, ala Este. Campus de Rabanales. Universidad de Córdoba. 14071-Córdoba. Spain. (5)
Institute of Medical Microbiology, University of Zurich (5)
Keck MS & Proteomics Resource Yale School of Medicine (5)
University of Liverpool (5)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (4)
Liverpool John Moores University (4)
Proteomics Core Facility, Biozentrum, University of Basel, Switzerland (4)
Biozentrum, University of Basel, 4056 Basel, Switzerland (3)
Lab of Neuroproteomics, Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, SP, Brazil (3)
The Second Hospital of Dalian Medical University (3)
The University of Manchester (3)
1 Department of Otorhinolaryngology - Head and Neck Surgery, University of Helsinki and HUS Helsinki University Hospital, P.O.Box 263, FI-00029 HUS, Helsinki, Finland 2 Department of Biosciences and Nutrition, Karolinska Institutet, SE-171 76, Stockholm, Sweden. 3 Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki, Finland. (2)
Brain Injury Center, Renji Hospital, School of Medicine, Shanghai Jiao Tong University; Shanghai Institute of Head Trauma, Shanghai, China, 200127. (2)
Center for Biotechnology and Department of Botany, Federal University of Rio Grande do Sul, Porto Alegre, P.O. Box 15005, 91501-970, Brazil (2)
Chinese Academy of Sciences Shanghai Institute of Materia Medica (2)
College of Pharmacy, Jinan University, Guangzhou, China (2)
College of Resources and Environment, Fujian Agricultural and Forestry University (2)
Department of Biochemistry and Molecular Biology Indiana University School of Medicine Indianapolis, IN (2)
Department of Biomedicine, Aarhus University (2)
Department of Biomedicine, Aarhus University, Aarhus, Denmark (2)
Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 USA (2)
Department of Dental Medicine (DENTMED), OF, Karolinska Institutet (2)
Department of Genetics and Molecular Biology, Cinvestav-IPN (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Dept. of Biochemistry, Laboratory of Neuroproteomic, Biology Institute, Brazil (2)
Director, Centre for Proteome Research Department of Biochemistry & Systems Biology Institute of Systems, Molecular & Integrative Biology University of Liverpool Crown Street, Liverpool L69 7ZB +44 151 795 4424 (2)
Discovery Proteomics Facility University of Oxford (2)
Forensic Science Research Group, Faculty of Health and Life Sciences, Applied Sciences, Northumbria University, NE1 8ST, Newcastle Upon Tyne, UK (2)
InterPrET Center, Department of Biomedicine, Aarhus University, Aarhus DK-8000, Denmark (2)

Tags

xref:PubMed:17470535 (1)
xref:PubMed:18342361 (1)
xref:PubMed:16998468 (1)

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A multi-omics dataset of C57 BL/6J mice regulated function by feed with ε-polylysine

The proteomic and metabolomic differences in mice fed ε-polylysine were detected by high-throughput sequencing and screening. The effects of ε-polylysine on the proteome and metabolomics of C57 BL/6J mice were studied. DIA proteome sequencing and liquid chromatography-mass spectrometry (LC-MS) we...

2025-04-14 | MTBLS4273 | MetaboLights

Molecular epidemiology of avian leukosis virus subgroup J in layer flocks in China.

Not available

S-EPMC3295186 | biostudies-literature

Association between mitochondrial DNA haplogroups J and K, serum branched-chain amino acids and lowered capability for endurance exercise.

Not available

S-EPMC9137050 | biostudies-literature

Development and application of real-time PCR for detection of subgroup J avian leukosis virus.

Not available

S-EPMC3536253 | biostudies-literature

A recombinant avian leukosis virus subgroup j for directly monitoring viral infection and the selection of neutralizing antibodies.

Not available

S-EPMC4270768 | biostudies-literature

Avian leukosis virus subgroup J induces VEGF expression via NF-κB/PI3K-dependent IL-6 production.

Not available

S-EPMC5348319 | biostudies-literature

Small RNAs in Chlamydomonas reinhardtii

RNA populations in Chlamydomonas reinhardtii Keywords: Highly parallel pyrosequencing Small RNAs were prepared from Chlamydomonas reinhardtii total extracts,ligated to a 3' adaptor and a 5' acceptor sequentially, and then RT-PCR amplified. PCR products were reamplified using a pair of 454 cloning pr...

ORGANISM(S): Chlamydomonas reinhardtii

2007-05-15 | E-GEOD-7308 | biostudies-arrayexpress

Molecular characterization of avian leukosis virus subgroup J in Chinese local chickens between 2013 and 2018.

Not available

S-EPMC7647831 | biostudies-literature

N6-methyladenosine modification of the subgroup J avian leukosis viral RNAs attenuates host innate immunity via MDA5 signaling.

Not available

S-EPMC12043233 | biostudies-literature

A 205-nucleotide deletion in the 3' untranslated region of avian leukosis virus subgroup J, currently emergent in China, contributes to its pathogenicity.

Not available

S-EPMC3497689 | biostudies-literature