Rab-gtpase - OmicsDI

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Unknown (622)
Transcriptomics (263)
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Organisms

Homo sapiens (99)
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Musa acuminata (1)

Organisms

Homo sapiens (6)
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Repository

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Disease

Parkinson's disease (4)
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Technology Type

Mass Spectrometry (32)
Shotgun proteomics (18)
Affinity purification coupled with mass spectrometry proteomics (7)
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Instrument Platform

Illumina NovaSeq 6000 (7)
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MS:1001581 (1)
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Publication Date

2012 (41)
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2007 (5)
2005 (4)
2018 (2)

UNIPROT ID/AC

O53978_MYCTU (1)
DNAJ2_MYCTU (1)
O50383_MYCTU (1)
I6Y498_MYCTU (1)
O53382_MYCTU (1)
Y2963_MYCTU (1)
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ECCC4_MYCTU (1)

CHEBI ID

CHEBI:26034 (1)
CHEBI:143106 (1)
CHEBI:81810 (1)
CHEBI:166563 (1)
CHEBI:139445 (1)
CHEBI:41094 (1)
CHEBI:167860 (1)
CHEBI:167740 (1)
CHEBI:31445 (1)
CHEBI:34187 (1)
CHEBI:183489 (1)
CHEBI:7027 (1)
CHEBI:193016 (1)
CHEBI:183418 (1)
CHEBI:183375 (1)
CHEBI:177535 (1)
CHEBI:67040 (1)
CHEBI:25682 (1)
CHEBI:52153 (1)
CHEBI:31747 (1)
CHEBI:177850 (1)
CHEBI:16523 (1)
CHEBI:27840 (1)
CHEBI:165632 (1)
CHEBI:16269 (1)
CHEBI:132583 (1)
CHEBI:17061 (1)
CHEBI:41308 (1)
CHEBI:17768 (1)
CHEBI:24266 (1)

Metabolite Name

Uridine 5'-diphosphoglucuronic acid (1)
L-Glutathione (reduced) (1)
N-Acetyl-1-aspartylglutamic acid (1)
Uridine 5'-diphosphogalactose (1)
Cyclic ADP-ribose (1)
L-Glutathione oxidized (1)
Guanosine monophosphate (GMP) (1)
AICA ribonucleotide (1)
2,5-di-tert-Butylhydroquinone (1)
Uridine monophosphate (UMP) (1)
Folic acid (1)
S-Lactoylglutathione (1)
UDP-N-acetylglucosamine (1)
Thymidine 5'-monophosphate (1)
Gluconic acid (1)
(+/-)12(13)-DiHOME (1)
D-Raffinose (1)
Pantothenic acid (1)
Adenosine 5'-monophosphate (1)
DL-Tryptophan (1)
Adenosine diphosphate (ADP) (1)
(+/-)9-HpODE (1)
Citric acid (1)
(15Z)-9,12,13-Trihydroxy-15-octadecenoic acid (1)
Dibutyl phthalate (1)
Adenosine (1)
Uridine 5'-diphosphate (UDP) (1)
Tetradecanedioic acid (1)
Palmitic acid (1)
N-Acetyl-L-phenylalanine (1)

IsPrivate

False (1)

First Public Date

2026 (3)
2025 (2)
2021 (2)
2020 (2)
2015 (2)
2023 (1)
2017 (1)
2014 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (183)
RNA-seq of coding RNA (32)
Comparative genomic hybridization by array (12)
ChIP-seq (7)
RNA-seq of non coding RNA (5)
RNA-seq of total RNA (4)
ChIP-chip by tiling array (3)
Other (3)
RNA-seq of coding RNA from single cells (3)
Methylation profiling by high throughput sequencing (3)
Transcription profiling by tiling array (2)
RIP-seq (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
ATAC-seq (1)
DNA-seq (1)
Methylation profiling by array (1)

Release Date

2012 (64)
2020 (59)
2010 (56)
2014 (54)
2013 (53)
2015 (51)
2024 (45)
2021 (45)
2016 (44)
2025 (43)
2018 (40)
2011 (40)
2017 (39)
2023 (37)
2008 (37)
2022 (36)
2019 (33)
2009 (29)
2007 (20)
2004 (18)
2026 (11)
2005 (9)
2006 (9)
2001 (6)
2003 (3)
2000 (3)
2002 (2)
1999 (2)
1998 (2)

Lab affiliation

University of Victoria (3)
Medical Research Council (MRC) Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, United Kingdom. (1)
Prof. Dr. Hadi Al-Hasani Direktor Institut für Klinische Biochemie und Pathobiochemie Deutsches Diabetes-Zentrum (DDZ) Leibniz-Zentrum für Diabetes-Forschung an der Heinrich-Heine-Universität Düsseldorf Auf´m Hennekamp 65 40225 Düsseldorf (1)
Prof. Dr. Hadi Al-Hasani Director: Institut für Klinische Biochemie und Pathobiochemie Deutsches Diabetes-Zentrum (DDZ) Leibniz-Zentrum für Diabetes-Forschung an der Heinrich-Heine-Universität Düsseldorf Auf´m Hennekamp 65 40225 Düsseldorf (1)
Medical Research Council Protein Phosphorylation and Ubiquitylation Unit, University of Dundee, Dundee, DD1 5EH, UK. (1)
Cullen Laboratory School of Biochemistry University of Bristol, UK (1)
Knight Cardiovascular Institute Oregon Health & Science University 3303 SW Bond Ave Portland, Oregon 97239, USA (1)
Laboratoire Reproduction et DÉveloppement des Plantes, ENS de Lyon (1)
Departments of Biological Chemistry and Pharmacology and Molecular Sciences, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA (1)
Institute of Clinical Chemistry, University Medical Center Goettingen, Goettingen/Germany (1)
MRC Centre for Molecular Bacteriology and Infection, Department of Life Sciences, Imperial College London, UK (1)
Cell Biology, MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK. (1)
Bavarian Center for Biomolecular Mass Spectrometry Technische Universität München Gregor-Mendel-Straße 4 85354 Freising DEUTSCHLAND / GERMANY (1)
Laboratory of Cell Biophysics Nencki Institute of Experimental Biology PAS Warsaw, Poland (1)
Proteomic and Metabonomic Laboratory, IRCCS-Fondazione Santa Lucia, Rome, Italy Via del Fosso di Fiorano 64/65, 00143, Rome, Italy +3906/501703215 (1)
Department of Physiology, The Johns Hopkins University School of Medicine (1)
Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver BC, Canada (1)
MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK (1)
Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Old Road Campus Headington OX3 7FZ, United Kingdom (1)
Department of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Universite de Sherbrooke Departement d'immunologie et de biologie cellulaire Sherbrooke, Quebec Canada (1)
Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA (1)
Department of Biology,Washington University in St. Louis (1)
1Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), 13125 Berlin, Germany. 2Freie Universität Berlin, Faculty of Biology, Chemistry, Pharmacy, 14195 Berlin, Germany (1)
BioOrganic Mass Spectrometry laboratory (LSMBO) Institut Plurisciplinaire Hubert Curien University of Strasbourg. France (1)
UCSF (1)
Max Planck Institute of Biochemistry (1)
Institute of Molecular Biology (IMB), Mainz, Germany (1)
UMASS Medical School, Department of Pathology (1)
School of Biochemistry, Biomedical Sciences Building, University Walk, University of Bristol, BS8 1TD, U.K. (1)

Tags

xref:PubMed:22083957 (2)
xref:PubMed:33826611 (1)
xref:PubMed:33357464 (1)
xref:PubMed:28939823 (1)
xref:PubMed:42032155 (1)
xref:PubMed:26178901 (1)
xref:PubMed:25713173 (1)

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RAB GTPase proximity interactome

RAB GTPases represent the most abundant family of small GTPases and regulate multiple aspects of membrane trafficking events, from cargo sorting to vesicle budding, transport, docking, and fusion. To control these processes, RABs are tightly regulated by guanine exchange factors (GEFs) and GTPase-ac...

ORGANISM(S): Homo sapiens (Human)

2025-12-02 | PXD057404 | Pride

Comparative proteomic identification of Rab GTPase interactors in Arabidopsis

Rab GTPases are key spatio-temporal regulators of endomembrane trafficking and endomembrane compartment identity across eukaryotes. This therefore makes them ideal targets for study of endomembrane compartment and trafficking pathway composition. In plants, few definitive interactors of Rab GTPases ...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2023-09-21 | PXD044263 | Pride

Arabidopsis Rab gtpase

A large Rab GTPase family in a small GTPase world.

Not available

S-EPMC5331893 | biostudies-literature

Phylogenetic reconstruction and evolution of the Rab GTPase gene family in Amoebozoa.

Not available

S-EPMC9707542 | biostudies-literature

NKX3-1, a Novel Transcriptional Factor of AR, Promotes Prostate Cancer Cell Survival via RAB3B GTPase-mediated protein trafficking

Androgen receptor (AR) orchestrates an intricate transcriptional regulatory network that governs prostate cancer initiation, development and progression. To understand this network in detail, we generated genome-wide maps of AR occupancy by ChIP-seq in LNCaP cells. We found NKX3-1, an androgen-depen...

ORGANISM(S): Homo sapiens

2011-11-16 | E-GEOD-28264 | biostudies-arrayexpress

Local RNA translation controls cell migration and Rab GTPase function

Numerous RNAs exhibit specific distribution patterns in mammalian cells. However, the functional and mechanistic consequences are relatively unknown. We investigate here the functional role of RNA localization at cellular protrusions of mesenchymal migrating cells, using as a model the RAB13 RNA, wh...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2020-08-01 | MSV000085883 | MassIVE

Arf1 orchestrates Rab GTPase conversion at the trans-Golgi network.

Not available

S-EPMC8351538 | biostudies-literature

Protein LidA from Legionella is a Rab GTPase supereffector.

Not available

S-EPMC3207706 | biostudies-literature

Evolution of Tre-2/Bub2/Cdc16 (TBC) Rab GTPase-activating proteins.

Not available

S-EPMC3655817 | biostudies-literature

Extensive in silico analysis of Mimivirus coded Rab GTPase homolog suggests a possible role in virion membrane biogenesis.