Radicals - OmicsDI

Show results for

Unknown (6501)
Transcriptomics (602)
Genomics (112)
Proteomics (105)
Metabolomics (81)
Other (7)
Models (5)
Methylation profiling (2)
Genomic (1)
Clinical (1)

Organisms

Homo sapiens (177)
Mus musculus (137)
Arabidopsis thaliana (101)
Saccharomyces cerevisiae (18)
Rattus norvegicus (16)
Oryza sativa (10)
Drosophila melanogaster (10)
Escherichia coli (8)
Danio rerio (7)
Caenorhabditis elegans (7)
Bacillus cereus (7)
Zea mays (6)
Candida albicans (6)
Triticum aestivum (5)
Thermus thermophilus HB8 (4)
Vitis vinifera (4)
Streptococcus pneumoniae (4)
Salmo salar (4)
Glycine max (3)
Oryza sativa Japonica Group (3)
Burkholderia cenocepacia (3)
Synechocystis sp. PCC 6803 (3)
cellular organisms (2)
Phaseolus vulgaris (2)
Bradyrhizobium japonicum (2)
Gossypium hirsutum (2)
Macaca mulatta (2)
Chlamydomonas reinhardtii (2)
Schizosaccharomyces pombe (2)
Armoracia rusticana (1)

Organisms

Homo sapiens (15)
Mus musculus (15)
Bacillus cereus (3)
Saccharomyces cerevisiae (3)
Staphylococcus aureus (3)
Lactiplantibacillus plantarum (2)
Gallus gallus (2)
Escherichia coli (2)
Streptococcus pneumoniae R6 (1)
Pinus sylvestris (1)
Clostridioides difficile 630 (1)
Arthrobacter (1)
Shigella flexneri (1)
Nicotiana benthamiana (1)
Salmo salar (1)
Exaiptasia diaphana (1)
Xenopus tropicalis (1)
Mycobacterium tuberculosis H37Rv (1)
Candida albicans (1)
Synechocystis sp. PCC 6803 (1)
Caenorhabditis elegans (1)
Listeria monocytogenes (1)
Sus scrofa (1)
Drosophila melanogaster (1)
Rattus norvegicus (1)
Zea mays (1)
Arabidopsis thaliana (1)
mouse gut metagenome (1)

Repository

biostudies-arrayexpress (563)
ENA (93)
MetaboLights (80)
geo (52)
MassIVE (43)
pride (33)
iProX (15)
jPOST (11)
EGA (7)
GPMDB (6)
BioModels (5)
PanoramaPublic (4)
dbGaP (1)
EVA (1)
GNPS (1)

Tissue

Cell culture (5)
Epithelial cell (3)
Liver (3)
Nectar (1)
Nectary (1)
Fibroblast of cardiac tissue (1)
Embryonic fibroblast (1)
Embryonic stem cell (1)
Urine (1)
Brain (1)
Blood plasma (1)
Root (1)
Leaf (1)
Hippocampal neuron (1)
Hepatocyte (1)
Permanent cell line cell (1)
Kidney (1)
T cell (1)

Disease

Not Available (6)
Down syndrome (1)
XCGD (1)
Uninfected 11dpi (1)
Ischaemia reperfusion injury (1)
No lesions (1)
Challenged with Pieris rapae larvae (1)
Chronic granulomatous disease (1)
Acute promyelocytic leukemia (1)
Normal (1)
Colorectal Neoplasms (1)
Calcium oxalate nephrolithiasis (1)
Lung carcinoma (1)
Alzheimer's disease (1)
Liver cancer (1)
Disease free (1)

Technology Type

Mass spectrometry (54)
Mass Spectrometry (33)
Mass spectrometry assay (22)
Shotgun proteomics (17)
Bottom-up proteomics (8)
Data-dependent acquisition (6)
NMR spectroscopy (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Glycoproteomics (1)
MSE (1)
SWATH MS (1)
Data-independent acquisition (1)
Gel-based experiment (1)
Top-down proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (9)
Illumina HiSeq 4000 (8)
NextSeq 500 (7)
Illumina HiSeq 2500 (6)
Illumina HiSeq 3000 (4)
GenePix Professional 4200A [Axon Instruments] (3)
ScanArray scanning hardware (2)
Illumina Genome Analyzer IIx (2)
Scanning hardware (2)
DNBSEQ-G400 (2)
Illumina HiSeq 2000 (2)
Maxwell® AS2000 instrument (1)
Qiagen RNAeasy, Bioanalyzer QubitFluorometer, Agilent 2100, RNA Pico 6000 chip (1)
Zephyr G3 NGS workstation (1)
MiRNeasy Micro kit (1)
Radial JawTM (1)
TBS380 (1)
Nanodrop2000 (1)
Covaris, NEBNext Ultra II DNA library prep kit (1)
(Make:PerkinElmer,Model:ScanArray 4000XL) (1)
Nimblegen (1)
Dell PowerEdge R820 (1)
ScanArray 4000 [PerkinElmer] (1)
Unix (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
NA (1)
NextSeq 2000 (1)
Illumina HiSeq 1000 (1)
BGISEQ-500 (1)
Illumina HiSeq 1500 (1)

Publication Date

2010 (81)
2015 (72)
2014 (70)
2013 (63)
2012 (54)
2008 (52)
2025 (46)
2011 (46)
2024 (45)
2016 (43)
2026 (34)
2009 (30)
2022 (27)
2020 (22)
2007 (20)
2021 (19)
2019 (19)
2018 (18)
2023 (14)
2017 (11)
2005 (5)
2004 (4)
2006 (3)

CHEBI ID

CHEBI:16335 (15)
CHEBI:16856 (14)
CHEBI:15891 (13)
CHEBI:30769 (13)
CHEBI:15354 (12)
CHEBI:16704 (12)
CHEBI:16750 (12)
CHEBI:16919 (12)
CHEBI:16811 (12)
CHEBI:16708 (12)
CHEBI:17203 (11)
CHEBI:17596 (11)
CHEBI:15428 (11)
CHEBI:6650 (11)
CHEBI:27266 (11)
CHEBI:17368 (11)
CHEBI:17154 (11)
CHEBI:16908 (7)
CHEBI:30763 (6)
CHEBI:24875 (3)
CHEBI:18248 (2)
CHEBI:18421 (2)
CHEBI:16240 (2)
CHEBI:61051 (1)
CHEBI:29191 (1)
CHEBI:18059 (1)
CHEBI:17879 (1)
CHEBI:16796 (1)
CHEBI:15379 (1)
CHEBI:15846 (1)

Metabolite Name

Adenosine (18)
Uracil (14)
L-Proline (14)
Betaine (13)
Guanosine (13)
Hypoxanthine (12)
Adenine (12)
L-Phenylalanine (12)
Cytidine (12)
Cytosine (11)
Creatinine (11)
L-Arginine (11)
L-Methionine (11)
L-Glutamine (11)
L-Leucine (11)
L-Tyrosine (10)
Linoleic acid (10)
Creatine (10)
Taurine (10)
Choline (10)
Inosine (10)
Uridine (10)
Xanthosine (9)
Methionine (9)
Choline (9)
Palmitic acid (9)
Glycine (9)
L-Histidine (9)
L-Valine (9)
Trigonelline (8)

First Public Date

2024 (17)
2014 (15)
2025 (14)
2020 (10)
2022 (8)
2026 (7)
2019 (7)
2023 (4)
2017 (4)
2018 (2)
2015 (2)
2021 (1)
2016 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (5)

Study status

Active, not recruiting (1)

Lab affiliation

Faculty of Biology Technion Haifa 32000 Israel (2)
Department of Chemistry, Washington University in St. Louis (2)
Assistant Member, Immunology Department St. Jude Children's Research Hospital Memphis, TN USA (1)
Rosalind Franklin Institute, Harwell Science and Innovation Campus, Oxford OX11 0FA, UK Department of Chemistry, University of Oxford, Oxford OX1 3TA, UK Department of Pharmacology, University of Oxford, Oxford OX1 3QT, UK (1)
Division of Microbiology and Immunology, Pathology Department, University of Utah School of Medicine, Salt Lake City, Utah (1)
Proteomics Care Facilty, Biozentrum, University of Basel, Switzerland (1)
University of Freiburg, Institute of Biology II, Schänzlestr. 1, 79104 Freiburg, Germany (1)
King's BHF Centre of Research Excellence, King's College London, London, UK (1)
Department of Biochemistry Biophysics and Molecular Biology, Iowa State University, Ames, IA, USA (1)
Institute of Microbiology, The Czech Academy of Scicences (1)
Professor of Chemistry, Immunology, Medicine Department of Chemistry, MSC 1134-196-525 Washington University in St. Louis One Brookings Drive St. Louis, Mo 63130 Phone: 314-935-4814; Fax: 314-935-7484 Dept: https://chemistry.wustl.edu/people/michael-l-gross Lab: https://mgrosslab.com/ (1)
Malaga University, Institute of Blue Biotechnology and Development (IBYDA), Department of Ecology and Geology, Malaga, Spain (1)
Guangzhou Eighth People’s Hospital Guangzhou Medical University, Guangzhou, China. (1)
Department of Chemistry, Southern University of Science and Technology (1)
Medical Proteomics Unit, Office for Research and Development, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand (1)
Food Science Research Institue (CIAL, CSIC-UAM) (1)
Institute of Microbiology, Czech Academy of Science, v.v.i. (1)
Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, 85764 Neuherberg, Germany (1)
TU Muenchen Center for Functional Protein Assemblies Department of Chemistry Chair for Organic Chemistry II (1)
Molecular Biology, Radboud Institute for Molecular Life Sciences (RIMLS), Nijmegen, the Netherlands (1)
EPFL SV SSV-GE AI 0149 (Bâtiment AI) Station 19 CH-1015 Lausanne (1)
Department of Pharmacology, Brain Korea 21 PLUS Project for Medical Sciences, Yonsei University College of Medicine, Seoul 03722, Korea (1)
University of Mississippi (1)
Institute of Chemical Technologies and Analytics, Technische Universität Wien, Getreidemarkt 9, 1060 Vienna, Austria; Research and Diagnostic Institute of Pathology, Medical University of Graz, Stiftingtalstraße 6, 8036, Graz, Austria (1)
AHF&RSS, Radiation Biology & Health Sciences Division, Bio-Sciences Group, Bhabha Atomic Research Centre, Mumbai 400 085, India. (1)
USDA-ARS (1)
Department of Chemistry and Biochemistry, University of Texas at Arlington, Arlington, TX, 76021 (1)
Sulfaging group Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V. Bunsen-Kirchhoff-Straße 11, 44139 Dortmund Germany (1)
Tianjin Medical University (1)
University of Wisconsin-Madison, Department of Chemistry (1)