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TranscriptomicsGenomic Profile of Primary Colorectal Cancers and associated Liver Metastases
Comparison of genomic alterations of primary colorectal cancers with liver metastases of the same patient Keywords: array CGH, colorectal cancer, colon cancer, liver metastasis 21 primary colorectal cancers and 21 matched liver metastases hybridized against sex-matched control pools
ORGANISM(S): Homo sapiens 
2010-07-07 | E-GEOD-10179 | biostudies-arrayexpress
TranscriptomicsExpression Profile of Primary Colorectal Cancers and associated Liver Metastases
Comparison of expression profiles of primary colorectal cancers with liver metastases of the same patient. Additionally, expression data of normal colon and liver tissue. Abstract of publication will be included upon publication Keywords: expression profiling, colorectal cancer, colon cancer, liver...
ORGANISM(S): Homo sapiens 
2010-07-07 | E-GEOD-14297 | biostudies-arrayexpress
TranscriptomicsWnt secretion protein Evi/Gpr177 promotes glioma tumorigenesis
Silencing of Evi and beta-catenin in U87MG cells
ORGANISM(S): Homo sapiens 
2012-06-29 | E-MTAB-776 | biostudies-arrayexpress
TranscriptomicsMethylation profiling in pediatric medulloblastoma
Whole-genome screening of CpG Island methylation status by array-based profiling of absolute methylation status (array-PAMS). Methylation-specifically digested DNA (Cy3) was hybridized against methylation-sensitively digested DNA (Cy5) from the same sample. CGI methylation in 20 pediatric medullobla...
ORGANISM(S): Homo sapiens 
2010-06-30 | E-GEOD-4857 | biostudies-arrayexpress
TranscriptomicsArray-CGH screening of medulloblastoma
DNA copy-number profiling of 80 primary medulloblastomas of different histologies Keywords: Genetic modification Comparison of tumor DNA (medulloblastoma) versus control DNA (pool of lymphocyte DNA from 10 healthy donors). Whole-genome screening for DNA copy-number aberrations using array-based comp...
ORGANISM(S): Homo sapiens 
2007-08-01 | E-GEOD-8634 | biostudies-arrayexpress
TranscriptomicsArray-CGH screening of pediatric T-lymphoblastic leukemias (n=73)
DNA copy-number profiling of 73 T-ALLs Keywords: Genetic modification Comparison of tumor DNA (tumor) versus control DNA (pool of lymphocyte DNA from 10 healthy donors). Whole-genome screening for DNA copy-number aberrations using array-based comparative genomic hybridization (aCGH). Tumor DNA label...
ORGANISM(S): Homo sapiens 
2007-08-25 | E-GEOD-8738 | biostudies-arrayexpress
MetabolomicsUntargeted metabolomics workshop report: quality control considerations from sample preparation to data analysis

The Metabolomics workshop on experimental and data analysis training for untargeted metabolomics was hosted by the Proteomics Society of India in December 2019. The Workshop included six tutorial lectures and hands-on data analysis training sessions presented by seven speakers. The tutorials and ...

2020-12-17 | MTBLS1301 | MetaboLights
TranscriptomicsMicroarray-based DNA methylation profiling of medulloblastoma and normal cerebellum samples
Robust molecular subgrouping and copy-number profiling of medulloblastoma from small amounts of archival tumor material. Validation of patterns identified by whole-genome bisulphite sequencing in a larger cohort. DNA methylation profiles of 276 primary medulloblastoma and 8 normal cerebellum control...
ORGANISM(S): Homo sapiens 
2014-02-28 | E-GEOD-54880 | biostudies-arrayexpress
TranscriptomicsGenome-Wide Expression Profiling of human tumor-infiltrating microglia/macrophages
Microglia isolated from glioma patients gain anti-tumor activities upon poly (I:C) stimulation. Expression profiles of human tumor-infiltrating microglia/macrophages before (untreated) and after treatment with poly (I:C) for 48h (induced). Tumor-infiltrating microglia/macrophages were isolated from ...
ORGANISM(S): Homo sapiens 
2011-12-31 | E-GEOD-25289 | biostudies-arrayexpress
TranscriptomicsGenome-wide analysis of the function of Tlx in regulating mouse brain glioma gene expression
Analysis of the function of Tlx in regulating brain tumor stem cells (BTSCs) at the gene expression level. Based on our knowledge, we know that Tlx is specifically expressed in the neural stem cells in mouse brain. It also functionally regulates neurogenesis during the postnatal stages. The hypothes...
ORGANISM(S): Mus musculus 
2013-04-17 | E-GEOD-46125 | biostudies-arrayexpress
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