Rahman S S - OmicsDI

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Unknown (5183)
Proteomics (48)
Genomics (30)
Transcriptomics (29)
Metabolomics (5)
Models (1)
Genomic (1)

Organisms

Homo sapiens (52)
Mus musculus (16)
Caenorhabditis elegans (7)
Staphylococcus aureus (3)
Entamoeba histolytica (2)
Arabidopsis thaliana (2)
Rattus norvegicus (2)
Toxoplasma gondii GT1 (2)
Burkholderia cenocepacia (1)
bacterium (1)
Macaca mulatta (1)
Aspergillus fumigatus (1)
Bos indicus (1)
Architeuthis dux (1)
Babesia divergens (1)
Brassica napus (1)
Camelus dromedarius (1)
Klebsiella pneumoniae subsp. pneumoniae A (1)
Mycobacterium tuberculosis H37Rv_2009 (1)
Sus scrofa domesticus (1)

Organisms

Rossellomorea marisflavi (1)
Entamoeba histolytica (1)
Salmonella enterica subsp. enterica serovar Typhi (1)

Repository

pride (40)
biostudies-arrayexpress (30)
EGA (23)
MassIVE (5)
MetaboLights (5)
ENA (5)
BioModels (1)
dbGaP (1)
EVA (1)
iProX (1)
jPOST (1)
PAXDB (1)

Tissue

Cell culture (9)
Blood plasma (5)
Brain (4)
Blood (2)
Blood serum (2)
Neutrophil (2)
Astrocyte (1)
B cell (1)
Cell suspension culture (1)
Embryonic stem cell (1)
Epithelial cell (1)
Epithelial cell of cervix (1)
Kidney (1)
Leaf (1)
Liver (1)
Lung (1)
Mantle (1)
Oviduct epithelium (1)
Pancreas (1)
Permanent cell line cell (1)
Plant cell (1)
Root (1)
Saliva (1)
Skeletal muscle (1)

Disease

Not applicable (1)
Hepatocellular carcinoma (1)
Brain cancer (1)
Brain glioblastoma multiforme (1)
Cervix carcinoma (1)
Colon cancer (1)
Duchenne muscular dystrophy (1)
Glioblastoma (1)
Immune system disease (1)
Inflammation (1)
Non-alcoholic steatohepatitis (1)
Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (40)
Shotgun proteomics (18)
Bottom-up proteomics (11)
Illumina 15K (8)
Mass spectrometry (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-dependent acquisition (3)
Gel-based experiment (3)
Data-independent acquisition (2)
SWATH MS (2)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
SRM/MRM (1)

Instrument Platform

Illumina HiSeq 4000 (2)
LTQ Velos (2)
Q Exactive (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Perkin Elmer, USA (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap (1)
LTQ Orbitrap XL (1)
LTQ XL (1)
TripleTOF 5600 (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Xevo G2 QTOF (Waters) (1)

Publication Date

2015 (10)
2025 (10)
2026 (8)
2022 (8)
2023 (5)
2019 (5)
2020 (5)
2024 (4)
2012 (4)
2010 (4)
2009 (4)
2021 (4)
2013 (3)
2018 (3)
2017 (2)
2008 (2)
2011 (1)
2016 (1)
2014 (1)

UNIPROT ID/AC

1433B_MOUSE (1)
1433E_MOUSE (1)
1433F_MOUSE (1)
1433G_MOUSE (1)
1433T_MOUSE (1)
1433Z_MOUSE (1)
2A5A_MOUSE (1)
2A5E_MOUSE (1)
2A5G_MOUSE (1)
2AAA_MOUSE (1)
2ABA_MOUSE (1)
3HIDH_MOUSE (1)
4F2_MOUSE (1)
6PGD_MOUSE (1)
6PGL_MOUSE (1)
AAK1_MOUSE (1)
AATC_MOUSE (1)
AATM_MOUSE (1)
ABCB7_MOUSE (1)
ABCE1_MOUSE (1)
ABD12_MOUSE (1)
ABHD6_MOUSE (1)
ABI1_MOUSE (1)
ABLM1_MOUSE (1)
ABLM2_MOUSE (1)
ABR_MOUSE (1)
ACACA_MOUSE (1)
ACAD9_MOUSE (1)
ACADL_MOUSE (1)
ACADM_MOUSE (1)

CHEBI ID

CHEBI:15428 (3)
CHEBI:15741 (3)
CHEBI:15756 (3)
CHEBI:16010 (3)
CHEBI:16449 (3)
CHEBI:16811 (3)
CHEBI:16958 (3)
CHEBI:17376 (3)
CHEBI:17754 (3)
CHEBI:17822 (3)
CHEBI:18186 (3)
CHEBI:18237 (3)
CHEBI:18257 (3)
CHEBI:22653 (3)
CHEBI:24898 (3)
CHEBI:25017 (3)
CHEBI:25094 (3)
CHEBI:26271 (3)
CHEBI:27266 (3)
CHEBI:28044 (3)
CHEBI:28300 (3)
CHEBI:29016 (3)
CHEBI:30769 (3)
CHEBI:30915 (3)
CHEBI:6650 (3)
CHEBI:78320 (3)
CHEBI:15354 (2)
CHEBI:15356 (2)
CHEBI:15676 (2)
CHEBI:15682 (2)

Metabolite Name

Betaine (2)
Carnitine (2)
Hypoxanthine (2)
Sucrose (2)
1,3-dimethylurate (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0) (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2) (1)
1-(1-enyl-stearoyl)-GPE (P-18:0) (1)
1-arachidonoyl-GPC (20:4n6) (1)
1-arachidonoyl-GPI (20:4) (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6) (1)
1-linoleoyl-GPC (18:2) (1)
1-linoleoyl-GPE (18:2) (1)
1-methylguanidine (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
1-methylxanthine (1)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2) (1)
1-oleoyl-GPC (18:1) (1)
1-oleoyl-GPI (18:1) (1)
1-palmitoyl-2-arachidonoyl-GPC (16:0/20:4) (1)
1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4) (1)
1-palmitoyl-2-arachidonoyl-GPI (16:0/20:4) (1)
1-palmitoyl-2-linoleoyl-GPC (16:0/18:2) (1)
1-palmitoyl-2-linoleoyl-GPE (16:0/18:2) (1)

First Public Date

2026 (2)
2019 (2)
2021 (1)

Modelling Approach

Computational model (1)

Lab affiliation

Department of Neuro- and Sensory Physiology University Medical Center Göttingen Humboldtallee 23 37073 Göttingen (2)
Shiga University of Medical Science (2)
1 - College of Pharmacy, University of Sharjah, Sharjah 2 - Sharjah Institute for Medical Research, University of Sharjah, Sharjah (1)
1. Africa Health Research Institute, Durban, South Africa 2. 3Department of Microbiology, University of Alabama at Birmingham, Birmingham, AL, USA 3. Center for AIDS Research and Center for Free Radical Biology, University of Alabama at Birmingham, Birmingham, AL, USA (1)
Australian Proteome Analysis Facility, Macquarie University, Sydney NSW 2109, Australia (1)
Baylor College of Medicine, Houston, Texas (1)
Bioinformatics Solutions Inc., Waterloo, Ontario, Canada (1)
Cellular biology, Moreno lab, UGA, USA (1)
Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark. The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark. (1)
Center for Tropical and Emerging Global Diseases; Department of Cellular Biology, University of Georgia, Athens, Georgia, USA (1)
Centre for Proteome Research, Institute of Systems, Molecular and Integrative Biology, University of Liverpool; Liverpool, UK (1)
Department of Biological Sciences, University of Alberta (1)
Department of Biomedicine, University of Bergen, Norway (1)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (1)
Department of Molecular Medicine, The Scripps Research Institute (1)
Dept of Chemistry, University of Illinois at Urbana-Champaign (1)
Division of Infection Medicine, Department of Clinical Sciences, Lund, Lund University, Biomedical Center, Tornavägen 10, SE-22184 Lund, Sweden (1)
Genetics and Biochemistry Branch, NIDDK, National Institutes of Health, Bethesda, MD 20814, USA.  National Institute of Neurological Disorders and Stroke (NINDS), National Institutes of Health, Bethesda, MD, USA (1)
Harvard Medical School (1)
Hayley Sharpe, Signalling, Babraham Institute, Cambridge, UK (1)
Hubrecht Institute - Royal Academy of Arts and Sciences and University Medical Centre Utrecht, Utrecht, the Netherlands (1)
Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, United States (1)
Institute of Structural and Molecular Biology, Division of Biosciences, Darwin Building, University College London, Gower Street, London WC1E 6BT, United Kingdom (1)
John van Geest Cancer Research Centre, Nottingham Trent University (1)
Laboratorio de Referencia e Investigación en Parasitología, Centro Nacional de Microbiología, Instituto de Salud Carlos III (1)
Laboratory for Functional Genome Analysis Genzentrum Ludwig-Maximilians-Universität München Feodor-Lynen-Str. 25 D-81377 München Germany (1)
Molecular Signaling Laboratory, Dr. Panjwani Center forMolecular Medicine and Drug Research (PCMD), International Center for Chemical and Biological Sciences, University of Karachi, Karachi 75270, Pakistan (1)
Oxford Centre for Respiratory Medicine, Churchill Hospital, Oxford University Hospitals NHS Foundation Trust, Oxford, UK (1)
Pathology and Laboratory Medicine Kansas University Medical Center (1)
Professor, Gilula Chair in Chemical Biology, The Department of Chemistry, Skaggs Institute for Chemical Biology, The Scripps Research Institute 10550 North Torrey Pines Rd, La Jolla, CA 92037 (1)

IsPrivate

False (1)

Submitter Keywords

Ersilia (1)
Machine Learning Model (1)

Classification

protozoa (1)
bacteria (1)

Study type

Transcription profiling by array (14)
RNA-seq of coding RNA (7)
Transcription profiling by RT-PCR (3)
Transcription profiling by tiling array (2)
Other (2)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (686)
2023 (665)
2021 (653)
2024 (602)
2025 (593)
2020 (410)
2019 (296)
2018 (273)
2017 (204)
2015 (152)
2016 (143)
2014 (104)
2026 (99)
2012 (69)
2013 (67)
2010 (45)
2009 (44)
2011 (40)
2008 (29)
2007 (9)
2006 (8)
2003 (7)
2005 (6)
2004 (3)
2002 (2)
2000 (2)
2001 (1)
1998 (1)

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Entamoeba histolytica strain:Rahman

Entamoeba histolytica strain:Rahman Genome sequencing and assembly

PRJNA732351 | ENA

Bis(acetone 4-phenyl-thio-semi-carbazonato-κN,S)zinc(II).

Not available

S-EPMC2977486 | biostudies-literature

Bis(μ-4-hydr-oxy-2-oxidobenzaldehyde 4-ethyl-thio-semicarbazone)-κO,N,S:O;κO:O,N,S-bis-[chloridozinc(II)] dimethyl sulfoxide tris-olvate.

Not available

S-EPMC2977597 | biostudies-literature

Proteome of Staphylococcus aureus biofilm changes signifi-cantly with aging

Staphylococcus aureus is a notorious biofilm-producing pathogen that is frequently isolated from implantable medical device infections. As biofilm ages, it becomes more tolerant to antimicrobial treatment leading to treatment failure and necessitating the costly removal of infected devices. In this ...

ORGANISM(S): Staphylococcus aureus

2022-08-12 | PXD033499 | Pride