Raja M M - OmicsDI

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Unknown (859)
Transcriptomics (54)
Proteomics (54)
Genomics (20)
Metabolomics (6)
Models (1)
Multiomics (1)

Organisms

Homo sapiens (56)
Mus musculus (34)
Drosophila melanogaster (5)
Rattus norvegicus (4)
Thermus thermophilus HB8 (3)
Plasmodium falciparum (2)
Sus scrofa (2)
Carica papaya (1)
Plasmodium vivax (1)
Pan troglodytes (1)
Streptomyces coelicolor (1)
Oryza sativa (1)
Populus tremula x Populus alba (1)
Saccharomyces cerevisiae (1)
Candida albicans (1)
Arabidopsis thaliana (1)
cellular organisms (1)
Mycobacterium tuberculosis H37Ra (1)
Triticum aestivum (1)

Organisms

Drosophila melanogaster (1)

Repository

biostudies-arrayexpress (72)
pride (39)
MassIVE (9)
MetaboLights (5)
jPOST (4)
Cell Collective (1)
geo (1)
GNPS (1)
PanoramaPublic (1)
PeptideAtlas (1)
ENA (1)

Tissue

Cell culture (7)
Epithelial cell (5)
Kidney (5)
Brain (4)
Lung (4)
Oral epithelium (4)
Keratinocyte (3)
Neutrophil (3)
Blood (2)
Early embryonic cell (2)
Fibroblast (2)
Pluripotent stem cell (2)
Blood cell (1)
Cerebral cortex (1)
Colon (1)
Cortical interneuron (1)
Diploid cell (1)
Epithelial cell of proximal tubule (1)
Epithelium of bronchiole (1)
Epithelium of gall bladder (1)
HEK-293ET cell (1)
HaCaT cell (1)
Head and neck squamous cell carcinoma cell line (1)
Keratinized cell of the oral mucosa (1)
Malignant cell (1)
Midbrain dopaminergic neuron differentiation (1)
OKF-6 cell (1)
Ovary (1)
Plant cell (1)
Protein kinase regulator activity (1)

Disease

Parkinson's disease (10)
Malignant neoplasm of ovary (2)
Non-small cell lung carcinoma (2)
Amyotrophic lateral sclerosis (1)
Coronavirus infectious disease (1)
Disease free (1)
Head and neck squamous cell carcinoma (1)
Lysosomal storage disease (1)
Melanoma (1)
Neck carcinoma (1)
Oral cavity cancer (1)
Osteoporosis (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (39)
Shotgun proteomics (27)
Bottom-up proteomics (6)
Mass spectrometry (5)
Data-independent acquisition (5)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-dependent acquisition (3)
SRM/MRM (3)
SWATH MS (2)
NMR spectroscopy (1)
DiaPASEF (1)
Gel-based experiment (1)

Instrument Platform

NextSeq 500 (4)
LTQ Orbitrap Elite (4)
LTQ Orbitrap Velos (3)
Illumina NovaSeq 6000 (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
Illumina HiSeq 2500 (1)
Q Exactive Plus (1)
LTQ Orbitrap (1)
Orbitrap Eclipse (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Q Exactive HF (1)
Gas Chromatography MS (1)
Liquid Chromatography MS - POS - reverse phase MS - NEG - reverse phase (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2012 (16)
2014 (11)
2010 (10)
2016 (9)
2022 (9)
2025 (8)
2023 (8)
2021 (7)
2019 (7)
2018 (7)
2015 (7)
2011 (6)
2013 (5)
2017 (5)
2020 (4)
2009 (3)
2008 (3)
2024 (3)
2007 (2)
2005 (1)
2026 (1)

UNIPROT ID/AC

A0ELI5 (1)
A0JNY3 (1)
A0JNY7 (1)
A0JNZ1 (1)
A0MNP4 (1)
A0PJG4 (1)
A1A4T4 (1)
A1A553 (1)
A1A596 (1)
A1A5B6 (1)
A1E5T5 (1)
A1ILG8 (1)
A1L0U3 (1)
A1L0U6 (1)
A1L0V6 (1)
A1L311 (1)
A1L314 (1)
A1L341 (1)
A1L347 (1)
A1L366 (1)
A1L3B6 (1)
A1L3B8 (1)
A2A432 (1)
A2A468 (1)
A2A4P0 (1)
A2A547 (1)
A2A5N2 (1)
A2A5R2 (1)
A2A5V4 (1)
A2A5W4 (1)

ENSEMBL ID

ENSMUSG00000021039 (1)
ENSMUSG00000090272 (1)
ENSMUSG00000096833 (1)
ENSMUSP00000106991 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141542 (1)

CHEBI ID

CHEBI:26271 (3)
CHEBI:6650 (3)
CHEBI:15428 (2)
CHEBI:15729 (2)
CHEBI:16449 (2)
CHEBI:16857 (2)
CHEBI:17295 (2)
CHEBI:17992 (2)
CHEBI:18012 (2)
CHEBI:25017 (2)
CHEBI:27897 (2)
CHEBI:28621 (2)
CHEBI:30769 (2)
CHEBI:30915 (2)
CHEBI:32816 (2)
CHEBI:61993 (2)
CHEBI:78320 (2)
CHEBI:1283 (1)
CHEBI:12936 (1)
CHEBI:134206 (1)
CHEBI:136555 (1)
CHEBI:137501 (1)
CHEBI:137945 (1)
CHEBI:137977 (1)
CHEBI:14314 (1)
CHEBI:14336 (1)
CHEBI:15349 (1)
CHEBI:15354 (1)
CHEBI:15366 (1)
CHEBI:15440 (1)

Metabolite Name

Alanine (2)
Leucine (2)
Maltotriose (2)
Proline (2)
Triethanolamine (2)
(+)-Catechin (1)
(4E)-2-Oxohexenoicacid (1)
(7R)-7-(4-Carboxybutanamido)cephalosporanate (1)
(R)-4-Dehydropantoate (1)
(S)-4-Amino-5-oxopentanoate (1)
(S)-methylmalonate semialdehyde (1)
1,5-anhydro-D-mannitol (1)
1-Aminocyclopropane-1-carboxylate (1)
1-Caffeoylquinic Acid (1)
1-Methylpyrrolinium (1)
1-Palmitoyl-sn-glycero-3-Phosphocholine (1)
1-Pyrroline (1)
1-Pyrroline-2-carboxylic acid (1)
1-Pyrroline-4-hydroxy-2-carboxylate (1)
1-phenylpropane-1_2-dione (1)
2-Methyl-6-oxohepta-2_4-dienal (1)
2-Methylpropanaloxime (1)
2-Methylserine (1)
2-Oxoglutaric acid (1)
2-Phenylethanol (1)
2-coumarate (1)
3-(1-Pyrazolyl)-alanine (1)
3-(Pyrazol-1-yl)-L-alanine (1)
3-Dehydroxycarnitine (1)
3-Glycerophosphate (1)

First Public Date

2013 (1)

Study type

Transcription profiling by array (35)
ChIP-seq (16)
RNA-seq of coding RNA (6)
Unknown experiment type (4)
Comparative genomic hybridization by array (4)
RNA-seq of non coding RNA (2)
Human - One-color microarray (1)
Transcription profiling by RT-PCR (1)
DNA-seq (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (124)
2021 (112)
2025 (101)
2024 (98)
2023 (87)
2019 (53)
2018 (53)
2020 (50)
2015 (43)
2016 (37)
2014 (37)
2012 (28)
2017 (25)
2026 (19)
2013 (16)
2010 (14)
2011 (10)
2009 (8)
2008 (6)
2007 (4)
2005 (3)
2006 (1)
2003 (1)
2001 (1)

Lab affiliation

Institute of Bioinformatics , International Technology Park, Bangalore, India (2)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 USA (2)
9McKusick-Nathans Institute of Genetic Medicine, 10Departments of Biological Chemistry, and 11Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. (1)
CRUK Beatson Institute (1)
Department of Chemistry, University of Illinois Chicago, Chicago, USA (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA (1)
Faculty of Medical Sciences, Institute for Cell and Molecular Biosciences, Newcastle upon Tyne, UK (1)
Forschungsinstitut für Frauengesundheit Universitäts- Frauenklinik Uni Tübingen Germany (1)
Forschungsinstitut für Frauengesundheit Universitäts- Frauenklinik Universitätsklinikum Tübingen Germany (1)
Institute of Bioinformatics , International Technology Park, Bangalore, India. (1)
Institute of Bioinformatics, 7th floor, Discover Building, International Tech Park, Bangalore, India (1)
Institute of Bioinformatics, 7th floor, Discoverer building, International Tech Park, Bangalore 560 066, India (1)
Institute of Bioinformatics, Bangalore, Karnataka, India (1)
Institute of Bioinformatics, ITPB, Bangalore, India (1)
Institute of Bioinformatics, International Tech Park, Bangalore 560066, India (1)
Karolinska Institutet, Department of Medical Biochemistry and Biophysics, Division of Genome Biology, Science for Life Laboratory (1)
MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK. (1)
MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, United Kingdom DD1 5EH, UK (1)
MRC Protein Phosphorylation and Ubiquitylation Unit, Sir James Black Centre, Dow Street, School of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland, UK (1)
MRC Protein Phosphorylation and Ubiquitylation Unit, Sir James Black Centre, School of Life Sciences, University of Dundee, Dundee DD1 5EH, United Kingdom (1)
MRC Protein Phosphorylation and Ubiquitylation Unit, University of Dundee, DUNDEE, DD1 5EH, United Kingdom (1)
Max Delbrück Center for Molecular Medicine in the Helmholtz Association; Berlin Institute of Medical Systems Biology (BIMSB) (1)
McKusick-Nathans Institute of Genetic Medicine, Department of Biological Chemistry, Oncology and Pathology, Johns Hopkins University School of Medicine, Baltimore 21205, Maryland, USA (1)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland, 21205, USA (1)
Medical Research Council (MRC) Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, U.K. (1)
Medical Research Council (MRC) Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK (1)
Medical Research Council (MRC) Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, United Kingdom (1)
Medical Research Council (MRC) Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, United Kingdom. (1)
Medical Research Council (MRC) Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee DD1 5EH, UK. (1)
Medical Research Council (MRC) Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee; Dow Street, Dundee DD1 5EH, U.K. (1)

Tags

xref:PubMed:20620954 (1)

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Integrated multi-omic analysis of M. tuberculosis H37Ra redefines virulence attributes

M. tuberculosis H37Ra, an avirulent tubercle bacillus, is a commonly used model to investigate virulence attenuation in M. tuberculosis. Comparative high-throughput studies have earlier correlated its avirulence to the presence of specific mutations or absence of certain proteins. However, a recent ...

ORGANISM(S): Mycobacterium tuberculosis H37Ra

2018-10-22 | PXD008555 | Pride

Morin-VitaminE-β-CyclodextrinInclusionComplexLoadedChitosanNanoparticles (M-Vit.E-CD-CSNPs) Ameliorate Arsenic-Induced Hepatotoxicityina Murine Model.

Not available

S-EPMC9504860 | biostudies-literature

Post-ENSO 2024 mass bleaching and early signs of resilience in Pachyseris speciosa dominated reefs of Raja Ampat, Indonesia.

Not available

S-EPMC13473566 | biostudies-literature

Biological Knowledge of Thornback Ray (Raja clavata) from the Azores: Improving Scientific Information for the Effectiveness of Species-Specific Management Measures.

Not available

S-EPMC8301307 | biostudies-literature

Raja 42, a novel gamma lactam compound, is effective against Clostridioides difficile.

Not available

S-EPMC8423298 | biostudies-literature

Bistratamides M and N, Oxazole-Thiazole Containing Cyclic Hexapeptides Isolated from Lissoclinum bistratum Interaction of Zinc (II) with Bistratamide K.

Not available

S-EPMC5532651 | biostudies-literature

Translation and validation of the Bahasa Malaysia version of the Nasal Obstruction Symptom Evaluation scale (M-NOSE).

Not available

S-EPMC11298164 | biostudies-literature

Morphological and molecular characterization of Calicophoron raja (Nasmark, 1937) collected from wild Bovidae in South Africa.

Not available

S-EPMC9420427 | biostudies-literature

catena-Poly[[[triaqua-sulfatozinc(II)]-μ-3,3'-bis-(3-pyrid-yl)-1,1'-(m-phenyl-ene)diurea] methanol solvate monohydrate].

Not available

S-EPMC2983801 | biostudies-literature

[E-MTAB-214] ChiP-seq profiling of Drosophila melanogaster salivary glands to identify targets for NSL1 and MCRS2.

ChiP-seq profiling of Drosophila melanogaster salivary glands to identify targets for NSL1 and MCRS2. ArrayExpress Release Date: 2010-04-16 Publication Title: The Nonspecific Lethal Complex Is a Transcriptional Regulator in Drosophila Publication Author List: Raja SJ, Charapitsa I, Conrad T, Vaqueri...

ORGANISM(S): Drosophila melanogaster

2010-12-04 | GSE25709 | GEO

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994 Results

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Organisms

Organisms

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Tissue

Disease

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ENSEMBL ID

CHEBI ID

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