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TranscriptomicsHybrid_Poplar_H11-11_Leaves_Local_Stress_Response_DataSet3
We investigated the transcriptional response of hybrid poplar (Populus trichocarpa x deltoides) leaves to a variety of stress treatments (insect feeding by Malacosoma disstria larvae, mechanical wounding, wounding plus the application of insect oral secretions, and methyl jasmonate spray) over a 24 ...
ORGANISM(S): Populus trichocarpa x Populus deltoides 
2010-09-09 | E-GEOD-14081 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of rat proximal femoral growthplate after mid-shaft fracture
Mid-shaft fracture stimulates bone lengthening by increasing linear growth at the growthplate. This project studied changes in mRNA in the proximal growthplate after a mid-shaft fracture in a rat model. Experiment Overall Design: Study of rat proximal femoral growthplate after mid-shaft fracture in...
ORGANISM(S): Rattus norvegicus 
2008-06-12 | E-GEOD-3298 | biostudies-arrayexpress
TranscriptomicsHybrid_Poplar_H11-11_Leaves_Local_Stress_Response_DataSet2
We investigated the transcriptional response of hybrid poplar (Populus trichocarpa x deltoides) leaves to methyl jasmonate treatment over a 24 hour time course. Experiments were conducted using clonal trees under greenhouse conditions at the University of British Columbia. We used the 15.5K poplar...
ORGANISM(S): Populus trichocarpa x Populus deltoides 
2008-12-30 | E-GEOD-14039 | biostudies-arrayexpress
TranscriptomicsHybridPoplar_H11-11_Leaves_MalacosomaDisstria_Herbivory
From a set of 15 standard, normalized or full-length cDNA libraries, we generated 139 007 3'- or 5'-end sequenced ESTs, representing more than one-third of the c. 385 000 publicly available Populus ESTs. Clustering and assembly of 107 519 3'-end ESTs resulted in 14 451 contigs and 20 560 singletons,...
ORGANISM(S): Populus trichocarpa x Populus deltoides 
2008-04-22 | E-GEOD-9522 | biostudies-arrayexpress
TranscriptomicsHybrid_Poplar_H11-11_Leaves_Local_Stress_Response_DataSet1
We investigated the transcriptional response of hybrid poplar (Populus trichocarpa x deltoides) leaves to a variety of stress treatments (insect feeding by Malacosoma disstria larvae, mechanical wounding, and wounding plus the application of insect oral secretions) over a 24 hour time course. Exper...
ORGANISM(S): Populus trichocarpa x Populus deltoides 
2008-12-30 | E-GEOD-13767 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of femoral fracture healing in Rattus norvegicus subjects comparing intramedullary nailing, screw and plate fixation, and sham surgery
This is a study of femoral fracture healing in female rats 16 weeks old at fracture to compare intramedullary nailing, screw and plate fixation, and sham surgery. The sham surgery group received a surgical exposure of the femur, but no fracture, no plate, and no nail. Samples were collected at 1 d...
ORGANISM(S): Rattus norvegicus 
2007-11-03 | E-GEOD-1685 | biostudies-arrayexpress
TranscriptomicsGlobal monitoring of autumn gene expression within and among populations of Sitka spruce
Cold acclimation in conifers is a complex process, the timing and extent of which reflects local adaptation and varies widely along latitudinal gradients for many temperate and boreal tree species. In spite of their ecological and economic importance, little is known about the global changes in gene...
ORGANISM(S): Picea sitchensis 
2008-05-31 | E-GEOD-8370 | biostudies-arrayexpress
TranscriptomicsInterior Spruce_Bark_PissodesStrobi _Herbivory
We performed a transcriptome analysis of interior spruce (Picea glauca x engelmannii) bark response to weevil (Pissodes strobi) feeding using 21.8K spruce microarray (that contains 21.8 thousand unique transcripts). This microarray study revealed a large rearrangement of the interior spruce bark tra...
ORGANISM(S): Picea engelmannii x Picea glauca 
2012-12-01 | E-GEOD-23715 | biostudies-arrayexpress
TranscriptomicsLodgepole pine_Bark_Grosmannia clavigera_inoculation
Using 21K spruce microarray (that contains 21.8 thousand unique transcripts) we performed analysis of the transcriptome response of lodgepole pine (Pinus contorta) inoculated with the mountain pine beetle (Dendroctonus ponderosae) vectored fungal pathogen Grosmannia clavigera or treated with woundin...
ORGANISM(S): Pinus contorta 
2012-12-01 | E-GEOD-22924 | biostudies-arrayexpress
TranscriptomicsInterior spruce_Bark_Leptographium abietinum_inoculation
Using 21K spruce microarray (that contains 21.8 thousand unique transcripts) we performed analysis of the transcriptome response of interior spruce (Picea glauca x engelmannii) inoculated with the spruce beetle (Dendroctonus rufipennis) vectored blue stain fungal pathogen Leptographium abietinum or ...
ORGANISM(S): Picea engelmannii x Picea glauca 
2012-12-01 | E-GEOD-23678 | biostudies-arrayexpress
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