Rao S S - OmicsDI

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Unknown (6595)
Transcriptomics (146)
Proteomics (113)
Genomics (42)
Metabolomics (14)
Models (3)

Organisms

Homo sapiens (96)
Aerococcus urinae NBRC 15544 = CCUG 36881 (90)
Alteromonadales (90)
Mus musculus (53)
Drosophila melanogaster (4)
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Macaca mulatta (3)
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Arabidopsis thaliana (3)
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Saccharomyces cerevisiae (2)
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Pristionchus pacificus (1)
Heterodera avenae (1)
Cyclopterus lumpus (1)
Pan troglodytes (1)
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Mycobacterium tuberculosis H37Rv (1)
Canis lupus familiaris (1)
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Danio rerio (1)
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Gallus gallus (1)
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Staphylococcus aureus subsp. aureus RN4220 (1)

Organisms

Mus musculus (3)
Homo sapiens (2)
Caenorhabditis elegans (1)

Repository

biostudies-arrayexpress (170)
pride (90)
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iProX (11)
ENA (6)
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Tissue

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Technology Type

Mass Spectrometry (90)
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Instrument Platform

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GC-MS (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2014 (36)
2016 (28)
2010 (26)
2021 (22)
2025 (20)
2015 (20)
2012 (16)
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2023 (15)
2013 (15)
2019 (14)
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2011 (10)
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2008 (9)
2018 (8)
2017 (7)
2007 (3)
2009 (2)
2005 (1)

CHEBI ID

CHEBI:84651 (2)
CHEBI:88544 (2)
CHEBI:64522 (2)
CHEBI:77086 (2)
CHEBI:84644 (2)
CHEBI:73061 (2)
CHEBI:84424 (2)
CHEBI:1879 (2)
CHEBI:52381 (2)
CHEBI:58180 (2)
CHEBI:1 (2)
CHEBI:53027 (2)
CHEBI:53026 (2)
CHEBI:52385 (2)
CHEBI:52384 (2)
CHEBI:52389 (2)
CHEBI:52615 (2)
CHEBI:52388 (2)
CHEBI:49050 (2)
CHEBI:53040 (2)
CHEBI:52975 (2)
CHEBI:53039 (2)
CHEBI:53035 (2)
CHEBI:53048 (2)
CHEBI:53038 (2)
CHEBI:17309 (2)
CHEBI:53044 (2)
CHEBI:53034 (2)
CHEBI:60449 (2)
CHEBI:50611 (2)

Metabolite Name

Adenosine (4)
Guanosine (4)
Creatinine (4)
Hypoxanthine (4)
Glycine (3)
Uracil (3)
Betaine (3)
Nicotinamide (3)
Choline (3)
L-Proline (3)
Xanthine (3)
Creatine (3)
L-Methionine (3)
Inosine (3)
3-Hydroxyisovalerylcarnitine (2)
Glutamylleucine (2)
Beta-Alanine (2)
N6,N6,N6-Trimethyl-L-lysine (2)
Norvaline (2)
Glutamate (2)
Aspartate (2)
Quercetin (2)
Gamma-aminobutyric acid (2)
Phosphate (2)
Propionylcarnitine (2)
Thymine (2)
Allocystathionine (2)
5'-Methylthioadenosine (2)
1-Aminocyclopropanecarboxylic acid (2)
3-Indolepropionic acid (2)

IsPrivate

False (3)

Submitter Keywords

FROG (3)

First Public Date

2025 (3)
2021 (1)
2020 (1)
2017 (1)

Modelling Approach

Constraint-based model (3)

Modification

Not available (1)

Study type

Transcription profiling by array (89)
ChIP-seq (19)
RNA-seq of coding RNA (18)
ChIP-chip by tiling array (7)
Hi-C (6)
Other (6)
Methylation profiling by high throughput sequencing (5)
Transcription profiling by tiling array (3)
Comparative genomic hybridization by array (3)
Methylation profiling by array (3)
RNA-seq of non coding RNA (3)
Unknown experiment type (2)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
Transcription profiling by RT-PCR (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2022 (788)
2025 (727)
2023 (708)
2021 (671)
2024 (654)
2020 (533)
2019 (401)
2018 (382)
2017 (304)
2016 (275)
2015 (259)
2014 (218)
2013 (169)
2012 (131)
2011 (112)
2010 (110)
2026 (104)
2009 (61)
2008 (58)
2006 (27)
2007 (25)
2004 (12)
2005 (11)
2003 (7)
2001 (6)
2002 (5)
1997 (4)
2000 (1)
1999 (1)
1998 (1)

Lab affiliation

Proteomics & Metabolomics Facility, Center for Open Research Resources & Equipment University of Connecticut Storrs, CT 06269 (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China. (2)
THSTI - National Chair and Head, Drug Discovery Research Centre Translational Health Science and Technology Institute, Faridabad, INDIA (2)
UCSF (2)
1Department of Ophthalmology, Stem Cell Ocular Regenerative Medicine Center, Wilmer Eye Institute, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. (1)
Baylor College of Medicine Houston, Texas (1)
Brain Tumor Center, Division of Experimental Hematology and Cancer Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH 45229, USA (1)
CARL J. HERZOG PROFESSOR OF DERMATOLOGY STANFORD UNIVERSITY SCHOOL OF MEDICINE, STANFORD, CA 94305 (1)
COld Spring Harbor Laboratory (1)
CSIR-CCMB (1)
Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK (1)
Cancer Research UK University of Cambridge Li Ka Shing Centre Robinson Way Cambridge, CB2 0RE (1)
Cell Cycle Unit, Children's Medical Research Institute, 214 Hawkesbury Road, Westmead, NSW 2145, Australia (1)
Cell and Chemical Biology Leiden University Medical Center the Netherlands (1)
Celleluar and Molecular Pharmacology, UCSF (1)
Center for Cell and Gene Therapy Department of Neurosurgery Baylor College of Medicine Houston, Texas, USA (1)
Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA (1)
Chief, Division of Immunology, Boston Children’s Hospital Professor of Pediatrics and Medicine (1)
Chinese Academy of Sciences Shanghai Institute of Materia Medica (1)
Chinese-German Joint Laboratory for Natural Product Research, College of Biological Science and Engi-neering, Shaanxi University of Technology, Hanzhong 723000, Shaanxi, China (1)
College of Pharmacy, Anhui University of Chinese Medicine, Hefei 230012, China. (1)
Department of Animal Sciences, Faculty of BIOVIT, Norwegian University of Life Sciences, Ås, Norway (1)
Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, China (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland Faculty of Science, University of Zurich, Zurich, Switzerland (1)
Department of Biophysics, National Institute of Mental Health and Neurosciences (NIMHANS). India. (1)
Department of Cell- and Developmental Biology, Center for Anatomy and Cell Biology, Medical University of Vienna, Vienna, Austria (1)
Department of Cellular and Genetic Medicine, School of Basic Medical Sciences, Fudan University, Shanghai (1)
Department of Chemical & Systems Biology Stanford University USA (1)
Department of Chemical & Systems Biology, Stanford University, USA (1)

Tags

xref:PubMed:41135527 (3)
xref:PubMed:32968144 (1)
xref:PubMed:28867287 (1)
xref:PubMed:39931328 (1)
xref:PubMed:34163069 (1)

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The S. cerevisiae histone demethylase Jhd1 fine-tunes the distribution of H3K36me2

Histone methylation plays important roles in the regulation of chromatin dynamics and transcription. Steady state levels of histone lysine methylation are regulated by a balance between enzymes that catalyze either the addition or removal of methyl groups. Using an activity-based biochemical approac...

ORGANISM(S): Saccharomyces cerevisiae

2010-06-11 | E-GEOD-7627 | biostudies-arrayexpress

Cryptic Transcription in a set2âˆ† in Saccharomyces cerevisiae

In cells lacking the histone methyltransferase Set2, initiation of RNA polymerase II transcription occurs inappropriately within the protein-coding regions of genes, rather than being restricted to the proximal promoter. Here, we mapped the transcripts produced in an S. cerevisiae strain lacking Set...

ORGANISM(S): Saccharomyces cerevisiae

2010-05-17 | E-GEOD-13310 | biostudies-arrayexpress

Engineered Pichia pastoris for enhanced production of S-adenosylmethionine.

Not available

S-EPMC3750815 | biostudies-literature

DPP9's Enzymatic Activity and Not Its Binding to CARD8 Inhibits Inflammasome Activation.

Not available

S-EPMC6862324 | biostudies-literature

Molecular epidemiology of novel swine origin influenza virus (S-OIV) from Gwalior, India, 2009.

Not available

S-EPMC3126775 | biostudies-literature

Salmonella and S. aureus Escape From the Clearance of Macrophages via Controlling TFEB.