Rattus norvegicus - OmicsDI

Browse
Submit Data
Databases
API
Help

20534 Results

Show all Save search Copy query

Show results for

Transcriptomics (9189)
Genomics (8572)
Proteomics (1532)
Unknown (648)
Metabolomics (251)
Methylation profiling (223)
Other (109)
Multiomics (20)
Models (1)

Organisms

Rattus norvegicus (10038)
Mus musculus (1460)
Homo sapiens (1245)
synthetic construct (123)
Drosophila melanogaster (72)
Rattus rattus (70)
Danio rerio (64)
Caenorhabditis elegans (53)
Macaca mulatta (44)
Sus scrofa (40)
Gallus gallus (39)
Bos taurus (37)
Ovis aries (24)
Saccharomyces cerevisiae (19)
Arabidopsis thaliana (18)
Heterocephalus glaber (13)
Callithrix jacchus (10)
Strongyloides ratti (9)
Trypanosoma brucei (7)
mixed sample (4)
Mus musculus domesticus (3)
Schizosaccharomyces pombe (3)
Trichinella spiralis (3)
Bacteroides fragilis 638R (2)
Staphylococcus aureus (2)
Streptococcus pneumoniae (2)
Plasmodium falciparum (2)
Escherichia coli (2)
Cryptomys hottentotus hottentotus (1)
Spalax carmeli (1)

Organisms

Rattus norvegicus (7011)
rat gut metagenome (17)
Rattus norvegicus albus (8)
feces metagenome (7)
Mus musculus x Rattus norvegicus (6)
rat metagenome (2)
viral metagenome (2)
gut metagenome (2)
Homo sapiens (2)
Leptospira interrogans serovar Copenhageni str. Fiocruz R154 (1)
Leptospira sp. B5-022 (1)
Leptospira interrogans serovar Copenhageni str. Fiocruz R83 (1)
Yersinia enterocolitica LC20 (1)
Peromyscus maniculatus bairdii (1)
Polyomavirus sp. (1)
Leptospira interrogans serovar Pyrogenes str. Sri Lanka 14 (1)
Peromyscus polionotus (1)
Peromyscus californicus (1)
Leptospira sp. (1)
Peromyscus leucopus (1)
Yersinia pseudotuberculosis B-7194 (1)
Rattus tanezumi (1)
rodent metagenome (1)
Rattus rattus (1)
uncultured prokaryote (1)
Rattus (1)
Peromyscus maniculatus (1)
Enterobacter hormaechei subsp. xiangfangensis (1)
Mesocricetus auratus (1)
Escherichia coli (1)

Repository

geo (7296)
ENA (7216)
biostudies-arrayexpress (3561)
pride (1039)
iProX (248)
MassIVE (149)
MetaboLights (136)
MetabolomicsWorkbench (84)
jPOST (35)
PAXDB (35)
GNPS (31)
PeptideAtlas (20)
ExpressionAtlas (10)
EGA (10)
EVA (10)
NODE (5)
BioModels (1)

Tissue

Blood (34)
Liver (11)
Brain (10)
Heart (5)
Kidney (5)
Cecum (4)
Urine (4)
Amniotic fluid (3)
Colon (3)
Muscle (3)
Cultured cells (3)
Mitochondria (2)
Placenta (2)
Unspecified (2)
Intestine (2)
Lung (2)
Eye tissue (2)
Feces (2)
Rectus extraocular muscle (1)
Tibialis anterior (1)
Proximal tibia hypertrophic zone (1)
Proximal tibia proliferative and early hypertrophic zone (1)
Proximal tibia resting zone (1)
Proximal tibia proliferative zone (1)
Adrenal gland (1)
Thyroid (1)
Pooled sample (1)
Fibroblast cells (1)
Spleen (1)
Cerebrospinal fluid (1)

Disease

Normal (29)
Hypertension (5)
Alzheimer's disease (5)
Diabetes mellitus (4)
Hypertensive (3)
Burn injury (2)
Glioma (2)
Severely hypertensive (1)
Fatty liver disease (1)
Pheocromocytoma cell line (1)
Arrhythmias and right ventricular dysfunction (1)
Mild spinal cord injury (1)
Pheochromocytoma (1)
Uninjured (1)
Cocaine addiction (1)
Early-life seizures (1)
Hypotension (1)
Perineural invasion (1)
Mucopolysaccharidosis type 6 (1)
Model of metabolic syndrome (1)
Autoimmune disorder (1)
EAE-resistant (1)
Ischaemia reperfusion injury (1)
Folate deficiency (1)
Pneumococcal meningitis (1)
Hign immune pressure (1)
No injury (1)
Subarachnoid hemorrhage NOS (1)
Portal hypertension (1)
Insulin resistance (1)

Technology Type

Mass Spectrometry (1120)
Shotgun proteomics (581)
Bottom-up proteomics (205)
Affinity purification coupled with mass spectrometry proteomics (110)
Data-dependent acquisition (107)
Mass spectrometry (79)
Gel-based experiment (74)
ESI (66)
Data-independent acquisition (55)
SWATH MS (50)
Mass spectrometry assay (45)
Top-down proteomics (42)
EI (16)
Chemical cross-linking coupled with mass spectrometry proteomics (13)
HDMSE (13)
NMR spectroscopy (11)
SRM/MRM (7)
All-ion fragmentation (4)
MSE (4)
Mass spectrometry imaging (4)
NMR (3)
Affinity proteomics (3)
DiaPASEF (3)
Proteogenomics (3)
Metaproteomics (2)
NMR spectroscopy assay (1)
IR MS (1)
Glycoproteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (90)
Illumina HiSeq 2500 (84)
Illumina HiSeq 2000 (53)
NextSeq 500 (42)
Illumina HiSeq 4000 (37)
Illumina HiSeq 1500 (16)
NextSeq 550 (13)
Illumina NovaSeq X (8)
Axon- GenePix4000B (6)
NextSeq 2000 (6)
Illumina Genome Analyzer II (5)
Illumina MiSeq (5)
Agilent High resolution C scanner (4)
Vortex (4)
PALM Robo LCM (3)
Qubit 4.0 Fluorometer/ Agilen 5300 Fragment Analyzer (3)
Affymetrix GeneChip Scanner 3000 7G (3)
ScanArray 5000 [PerkinElmer] (3)
Scanning hardware (3)
N/A (3)
DNBSEQ-G400 (3)
PromethION (2)
Illumina TruSeq Small RNA Sample kit (2)
TRIzol reagent (2)
Feature Extraction Version: 7.0,10.5 (2)
AB SOLiD 4 System (2)
G2500A GeneArray scanner [Agilent Technologies] (2)
The Agilent scanner G2565BA (2)
Agilent�s Microarray Hybridization Oven (2)
NanoDrop ND-1000 Spectrophotometer (NanoDrop Technologies) (2)

Publication Date

2025 (767)
2026 (752)
2015 (748)
2014 (748)
2023 (748)
2022 (707)
2024 (700)
2021 (685)
2013 (652)
2016 (648)
2020 (639)
2010 (625)
2012 (569)
2008 (485)
2018 (482)
2011 (471)
2009 (464)
2017 (417)
2019 (415)
2007 (323)
2005 (185)
2006 (160)
2004 (103)
2003 (57)
2002 (2)

UNIPROT ID/AC

9544.ENSMMUP00000018617 (21)
9544.ENSMMUP00000024369 (21)
9544.ENSMMUP00000025280 (21)
9544.ENSMMUP00000025846 (21)
9544.ENSMMUP00000026578 (21)
9544.ENSMMUP00000027441 (21)
9544.ENSMMUP00000028078 (21)
9544.ENSMMUP00000028594 (21)
9544.ENSMMUP00000029651 (21)
9544.ENSMMUP00000032726 (21)
9544.ENSMMUP00000038917 (21)
9544.ENSMMUP00000039080 (21)
9544.ENSMMUP00000041152 (21)
A0A1D5Q0G5_MACMU (21)
A0A1D5Q3Q0_MACMU (21)
A0A1D5Q4H6_MACMU (21)
A0A1D5Q8I4_MACMU (21)
A0A1D5QD91_MACMU (21)
A0A1D5QFC1_MACMU (21)
A0A1D5QQX5_MACMU (21)
A0A1D5QUV8_MACMU (21)
A0A1D5QWS0_MACMU (21)
A0A1D5R1E0_MACMU (21)
A0A1D5R7W8_MACMU (21)
A0A1K0FU77_MACMU (21)
A0A5F7ZZ82_MACMU (21)
A0A5F8A104_MACMU (21)
A0A5F8A8A6_MACMU (21)
A0A5F8ABN7_MACMU (21)
A0A5F8AD18_MACMU (21)

ENSEMBL ID

ENSRNOG00000000558.4 (1)
ENSRNOG00000001492.4 (1)
ENSRNOG00000029871.2 (1)
ENSRNOG00000008479.4 (1)
ENSRNOG00000012794.4 (1)
ENSRNOG00000029938.2 (1)
ENSRNOG00000032085.2 (1)
ENSRNOG00000013971.4 (1)
ENSRNOG00000019490.4 (1)
ENSRNOG00000018567.4 (1)
ENSRNOG00000016356.4 (1)
ENSRNOG00000021265.3 (1)
ENSRNOG00000020361.4 (1)
ENSRNOG00000037948.1 (1)
ENSRNOG00000005981.4 (1)
ENSRNOG00000003069.2 (1)
ENSRNOG00000010539.3 (1)
ENSRNOG00000030636.2 (1)
ENSRNOG00000020110.3 (1)
ENSRNOG00000020606.4 (1)
ENSRNOG00000018267.4 (1)
ENSRNOG00000008544.2 (1)
ENSRNOG00000003253.3 (1)
ENSRNOG00000038085.1 (1)
ENSRNOG00000029207.2 (1)
ENSRNOG00000013436.3 (1)
ENSRNOG00000010280.4 (1)
ENSRNOG00000019005.3 (1)
ENSRNOG00000006979.4 (1)
ENSRNOG00000020828.4 (1)

CHEBI ID

CHEBI:16919 (26)
CHEBI:15891 (25)
CHEBI:17568 (24)
CHEBI:16704 (24)
CHEBI:30769 (24)
CHEBI:17596 (23)
CHEBI:15428 (22)
CHEBI:17154 (22)
CHEBI:16737 (22)
CHEBI:17368 (22)
CHEBI:18012 (20)
CHEBI:15741 (19)
CHEBI:16040 (18)
CHEBI:6650 (18)
CHEBI:17821 (18)
CHEBI:7916 (18)
CHEBI:16015 (18)
CHEBI:15354 (18)
CHEBI:15676 (17)
CHEBI:16708 (17)
CHEBI:17268 (17)
CHEBI:17203 (17)
CHEBI:16750 (16)
CHEBI:17750 (16)
CHEBI:18211 (16)
CHEBI:16027 (16)
CHEBI:30915 (16)
CHEBI:17895 (16)
CHEBI:17295 (16)
CHEBI:15756 (16)

Metabolite Name

Uracil (35)
Taurine (31)
Creatinine (31)
Hypoxanthine (31)
Inosine (30)
Uridine (27)
Creatine (26)
Cytosine (25)
Pantothenic acid (24)
Cholic acid (24)
Xanthosine (23)
Uric acid (23)
Choline (22)
L-Proline (21)
Taurocholic acid (21)
Adenine (21)
Xanthine (21)
Hippuric acid (21)
Thymine (20)
L-Histidine (20)
Indole (20)
Oleamide (20)
Adenosine (20)
Azelaic acid (20)
Citrulline (19)
Kynurenic acid (19)
Deoxycholic acid (19)
Citric acid (19)
L-Isoleucine (19)
L-Phenylalanine (19)

First Public Date

2014 (1683)
2024 (747)
2023 (619)
2025 (609)
2022 (595)
2026 (535)
2021 (480)
2020 (478)
2019 (310)
2018 (284)
2017 (280)
2015 (261)
2016 (229)
2013 (104)
2012 (1)
2010 (1)

Lab affiliation

Department of Animal and Poultry Sciences and the School of Neuroscience, Virginia Tech, Blacksburg, VA, USA (21)
Paris-Saclay Institute of Neuroscience, Team Melki, CNRS, Gif-sur-Yvette, France (8)
Department of Molecular Biology and Endocrinology, “VINČA”, Institute of Nuclear Sciences - National Institute of thе Republic of Serbia, University of Belgrade, Belgrade, Serbia (4)
Helmholtz-Centre for Environmental Research - UFZ (4)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (4)
ProCan®, Children’s Medical Research Institute, Faculty of Medicine and Health, The University of Sydney, Westmead, NSW, Australia. (4)
Aarhus University Hospital, Denmark (3)
AstraZeneca (3)
Center for Neuroscience and Cell Biology – University of Coimbra (3)
Division of Genetic and Genomic Medicine, Department of Pediatrics, UPMC Children's Hospital of Pittsburgh, Pittsburgh, USA (3)
Executive Science Officer, BioFrontiers InstituteDistinguished ProfessorProfessor, Howard Hughes Medical Institute MOLECULAR CELLULAR AND DEVELOPMENTAL BIOLOGY CU DENVER SCHOOL OF MEDICINE (3)
Institute of Physiology II, University of Freiburg, Germany (3)
Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), Université de Strasbourg,CNRS, IPHC UMR 7178, 67087 Strasbourg,France (3)
MPIs for Biophysics and Brain Research (3)
MPIs for Brain Research and Biophysics (3)
Manchester Academic Health Science Centre, Division of Cell Matrix Biology & Regenerative Medicine, School of Biological Sciences, Faculty of Biology, Medicine and Health, Manchester, UK (3)
Proteomics & Metabolomics Facility, Center for Open Research Resources & Equipment University of Connecticut Storrs, CT 06269 (3)
Research Unit for Molecular Medicine, Department of Clinical Medicine, Aarhus University, Denmark (3)
Technion Faculty of Medicine and Network Biology Research Laboratories, (3)
The University of Sydney (3)
University Hospital Cologne (3)
University of Southampton (3)
1) Department Preclinical Development and Validation, Fraunhofer Institute for Cell Therapy and Immunology IZI, Leipzig, Germany; 2) Institute for Bioanalysis, University of Applied Science Coburg, Coburg, Germany (2)
Aarhus University Department of Biomedicine Høegh-Guldbergsgade 10 DK-8000 Aarhus C (2)
Associate Professor, School of Animal Sciences Core Faculty, School of Neuroscience Faculty of Health Sciences Vice Chair, Institutional Biosafety Committee (IBC) Virginia Tech (2)
Borch Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, Indiana 47907, United States Purdue Institute for Integrative Neuroscience, Purdue University, West Lafayette, Indiana 47907, United States (2)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (2)
Cedars-Sinai Medical Center (2)
Cell Biology, Faculty of Science, Utrecht University, TheNetherlands (2)
Cellzome, a GSK company (2)

Tags

xref:PubMed:28321044 (10)
xref:PubMed:25475144 (10)
xref:PubMed:32904430 (9)
xref:PubMed:35440735 (8)
pathogen (8)
xref:PubMed:37355705 (7)
xref:PubMed:11158336 (7)
pathogen:bacterium (7)
xref:PubMed:32762937 (6)
xref:PubMed:15953391 (6)
xref:PubMed:28008941 (6)
xref:PubMed:30744511 (6)
xref:PubMed:37938195 (5)
xref:PubMed:37333110 (5)
xref:PubMed:36263809 (5)
xref:PubMed:34209243 (5)
xref:PubMed:28174132 (5)
xref:PubMed:25058030 (5)
xref:PubMed:22806142 (5)
xref:PubMed:19470782 (5)
xref:PubMed:32637607 (4)
xref:PubMed:31888290 (4)
xref:PubMed:37333266 (4)
xref:PubMed:37689587 (4)
xref:PubMed:33836606 (4)
xref:PubMed:15291962 (4)
xref:PubMed:17260206 (4)
xref:PubMed:16894589 (4)
xref:PubMed:17205564 (4)
xref:PubMed:37446067 (4)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Classification

bacteria (7)
viruses (1)

Modification

Not available (16)
57.021464 (7)
15.994915 (6)
4-tetrahydrothiazine-3-carboxylic acid (3)
-17.026549 (2)
-18.010565 (2)
42.010565 (2)
45.987721 (2)
0.984 (1)
0.984016 (1)
15.99491 (1)
1x(15)N labeled L-valine (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.02146 (1)
6x(2)H labeled dimethylated L-arginine (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (2645)
RNA-seq of coding RNA (393)
ChIP-seq (79)
Unknown experiment type (73)
RNA-seq of non coding RNA (47)
RNA-seq of coding RNA from single cells (31)
Methylation profiling by array (30)
Animal - High-throughput sequencing (23)
Methylation profiling by high throughput sequencing (23)
Comparative genomic hybridization by array (22)
RNA-seq of total RNA (20)
Other (18)
ChIP-chip by tiling array (17)
Transcription profiling by SAGE (15)
Animal - One-color microarray (14)
ChIP-chip by array (14)
Transcription profiling by RT-PCR (12)
MicroRNA profiling by array (12)
Cell line - High-throughput sequencing (8)
DNA-seq (8)
MicroRNA profiling by high throughput sequencing (6)
ATAC-seq (6)
Genotyping by array (5)
Transcription profiling by tiling array (4)
Baseline (2)
Differential (2)
Cell line - One-color microarray (2)
Spatial transcriptomics by high-throughput sequencing (2)
RIP-seq (2)
Ribo-seq (2)

Release Date

2014 (442)
2010 (380)
2015 (369)
2008 (356)
2013 (350)
2012 (320)
2011 (256)
2016 (254)
2009 (224)
2007 (203)
2021 (120)
2022 (110)
2020 (101)
2023 (99)
2005 (85)
2018 (84)
2017 (84)
2024 (83)
2025 (79)
2019 (65)
2026 (55)
2006 (54)
2004 (27)
2003 (5)
2002 (1)
2001 (1)
2000 (1)
1999 (1)

Previous page
1 / 2054
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 2054
Next page

Sort by:

Relevance

Page size

10

Hypoxia transcriptome sequencing of blind mole rat (BMR, Spalax galili) and rat (Rattus norvegicus)

Deep sequencing of mRNA from Spalax galili and Rattus norvegicus Total RNAs were isolated from the brain of female BMRs under various oxygen concentrations (3%, 6%, 10%, 14%, and 21%) for 6 hours. We also got RNAs from the brain of rats under 6%, 10%, 14%, and 21% oxygen conditions.

ORGANISM(S): Nannospalax galili

2014-06-05 | E-GEOD-49485 | biostudies-arrayexpress

Molecular complexity of the major urinary protein system of the Norway rat, Rattus norvegicus C4PR_LIV

Major urinary proteins (MUP) are the major component of the urinary protein fraction in house mice (Mus spp.) and rats (Rattus spp.). The structure, polymorphism and functions of these lipocalins have been well described in the western European house mouse (Mus musculus domesticus), clarifying their...

ORGANISM(S): Rattus norvegicus (Rat)

2019-08-01 | PXD013986 | Pride

2u-globulins Rattus norvegicus Phosphorylation Mups

Rattus norvegicus

Rattus norvegicus Proteome

PRJNA1230358 | ENA

Rattus norvegicus

Rattus norvegicus Metagenome

PRJNA1013171 | ENA

Rattus norvegicus

Rattus norvegicus transcriptome (PRJCA010345)

PRJDB38112 | ENA

Rattus norvegicus

Rattus norvegicus Genome sequencing

PRJNA1498728 | ENA

Rattus norvegicus

Rattus norvegicus Genome sequencing

PRJNA488524 | ENA

Rattus norvegicus

Rattus norvegicus Genome sequencing

PRJNA933560 | ENA

Rattus norvegicus

Rattus norvegicus blood Transcriptome

PRJNA343402 | ENA

Rattus norvegicus

Rattus norvegicus Raw sequence reads

PRJNA826993 | ENA

Previous page
1 / 2054
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 2054
Next page

Sort by:

Relevance

Page size

10

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data