Rcc - OmicsDI

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Unknown (3701)
Genomics (620)
Transcriptomics (490)
Proteomics (66)
Metabolomics (30)
Clinical (26)
Other (19)
Methylation profiling (13)
Genomic (4)
Models (2)

Organisms

Homo sapiens (631)
Mus musculus (48)
Aerococcus urinae NBRC 15544 = CCUG 36881 (45)
Alteromonadales (45)
Bacteria (45)
Canis lupus familiaris (45)
Carya cathayensis (45)
Ectopseudomonas oleovorans CECT 5344 (45)
Ensifer adhaerens (45)
Rattus norvegicus (8)
Emiliania huxleyi (4)
Drosophila melanogaster (3)
synthetic construct (2)
Anopheles merus (1)
Macaca mulatta (1)
Bos indicus (1)
Mus musculus cytomegalovirus 2 (1)
Betapolyomavirus macacae (1)
human gammaherpesvirus 4 (1)
JC polyomavirus (1)
Merkel cell polyomavirus (1)
Betapolyomavirus hominis (1)
Human alphaherpesvirus 2 (1)
Human alphaherpesvirus 1 (1)
Human gammaherpesvirus 8 (1)
Murid gammaherpesvirus 4 (1)
Murid betaherpesvirus 1 (1)
Human immunodeficiency virus 1 (1)
Human betaherpesvirus 5 (1)
triploid Carassius auratus red var. x (Carassius auratus red var. x Cyprinus carpio) (1)

Organisms

Homo sapiens (299)
Mus musculus (27)
Micromonas pusilla (13)
Ostreococcus tauri (13)
Rattus norvegicus (4)
Micromonas commoda (3)
unidentified (3)
Bos indicus (2)
Canis lupus familiaris (2)
Candidatus Methanomethylophilus sp. 1R26 (1)
Carassius auratus red var. (1)
Synechococcus sp. RCC307 (1)
Actinomycetota (1)
Teleaulax sp. RCC4857 (1)
Rhinomonas sp. RCC821 (1)
Carassius auratus (1)
Drosophila melanogaster (1)
Macaca mulatta (1)

Repository

ENA (456)
biostudies-arrayexpress (318)
geo (274)
EGA (92)
pride (45)
MetaboLights (24)
MassIVE (10)
jPOST (5)
dbGaP (4)
GNPS (4)
iProX (4)
BioModels (2)
EVA (2)
MetabolomicsWorkbench (2)
PeptideAtlas (2)

Tissue

Kidney (13)
Cell culture (12)
Epithelial cell (5)
Urine (2)
Others (2)
Permanent cell line cell (2)
RCC 786-O cell (2)
Urine (2)
A-431 cell (1)
B cell (1)
B-cell lymphoma cell (1)
B-lymphocyte (1)
C2C12 cell (1)
Calu-3 cell (1)
ES-D3 cell (1)
ES-E14 cell (1)
HBL-1 cell (1)
HEK-293 cell (1)
HL-60 cell (1)
HeLa cell (1)
Hodgkin lymphoma cell line (1)
IMR-32 cell (1)
J774.2 cell (1)
JURKAT E-6.1 cell (1)
KM-H2 cell (1)
L-428 cell (1)
L-540 cell (1)
LN-18 cell (1)
LN-229 cell (1)
MIN-6 cell (1)

Disease

Renal cell carcinoma (10)
Carcinoma (7)
Carcinoma, Renal Cell (5)
Kidney cancer (5)
Renal clear cell carcinoma (4)
Normal (3)
Papillary renal cell carcinoma (3)
Malignant neoplasm of ovary (3)
Melanoma (2)
Lung Neoplasms (2)
Neoplasms (2)
Colorectal Neoplasms (2)
Cancer (2)
Urinary bladder cancer (2)
Kidney Clear Cell Carcinoma (1)
Normal renal cortex (1)
Clear cell renal cell carcinoma (1)
Tumour (1)
Carcinoma (1)
Advanced solid tumors (squamous cell carcinoma of the head and neck (SCCHN), non-small cell lung cancer (NSCLC), cutaneous melanoma, triple-negative breast cancer (TNBC), renal cell carcinoma (RCC), urothelial carcinoma, gastric, esophageal, cervical, and colorectal cancer (CRC). (1)
Renal cell cancer (1)
Neoplasms by Site (1)
Carcinoma, Ovarian Epithelial (1)
Liver Neoplasms (1)
Lymphoma (1)
Sarcoma (1)
Glioblastoma (1)
Breast cancer (1)
Cholangiocarcinoma (1)
Mixed disorder as reaction to stress (1)

Technology Type

Mass Spectrometry (46)
Shotgun proteomics (24)
Mass spectrometry (18)
Affinity purification coupled with mass spectrometry proteomics (7)
Bottom-up proteomics (7)
Mass spectrometry assay (6)
Data-dependent acquisition (5)
Gel-based experiment (3)
Illumina HiSeq 2500, ILLUMINA (2)
Illumina HiSeq 2500 (2)
Data-independent acquisition (2)
SWATH MS (2)
Top-down proteomics (2)
GeneChip HTA 2.0 (1)
Illumina HumanCNV370, Illumina HumanHap 300 v2 Duo, Taqman and sequencing, Illumina Human660W-Quad (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, ILLUMINA (1)
Illumina Genome Analyzer II (1)
NMR (1)
ESI (1)
Affinity proteomics (1)
HDMSE (1)
Immunopeptidomics (1)

Instrument Platform

Illumina NovaSeq 6000 (6)
Xevo G2-S QTof|1002276 (4)
Illumina Genome Analyzer IIx (3)
Illumina HiSeq 2500 (3)
Illumina HiSeq 4000 (3)
NextSeq 500 (3)
Illumina HiSeq 2000 (2)
- (2)
NanoString nCounter (1)
Genomics Core Shared Resources at Augusta University (RRID: SCR_026483) (1)
RNeasy Mini Kit (Qiagen) (1)
GentleMACS Octo Dissociator with Heaters (Miltenyi Biotec, Cat. No. 130-096-427) together with the Human Tumor Dissociation Kit (Miltenyi Biotec, Cat. No. 130-095-929), (1)
NCounter Prep Station & Digital Analyzer (1)
NanoString (1)
TapeStation (1)
Element AVITI (1)
NCounter Digital Analyzer (1)
NCounter Prep Station (1)
NanoDrop ND-100 (1)
Generic (1)
Affymetrix GeneChip Scanner (1)
Computer (1)
Maxwell 16, Promega (1)
HiScan, Illumina (1)
HiSeq 2000 (1)
Affymetrix Gene Titan (1)
Gene Titan (1)
Affymetrix GeneChip Scanner 3000 (1)
N/A (1)
Illumina HiSeq 1500 (1)

Publication Date

2016 (62)
2015 (58)
2025 (54)
2012 (53)
2013 (47)
2010 (47)
2026 (46)
2014 (44)
2024 (37)
2022 (32)
2021 (27)
2023 (26)
2020 (26)
2011 (25)
2008 (25)
2019 (20)
2017 (16)
2009 (14)
2018 (11)
2007 (8)
2006 (3)
2003 (3)
2005 (1)
2004 (1)
2001 (1)

UNIPROT ID/AC

A5A3E0 (2)
A6NHL2 (2)
A6NNZ2 (2)
B1AK88 (2)
B2RPK0 (2)
B3KML9 (2)
B3KT93 (2)
B4DHB3 (2)
B4DL86 (2)
B4DPR2 (2)
B4DRV9 (2)
B4E3A4 (2)
B8ZZQ6 (2)
B9VP19 (2)
C9JM50 (2)
C9JRZ8 (2)
C9JSZ1 (2)
D3DPU2 (2)
E7EX29 (2)
E9PAV3 (2)
E9PFP8 (2)
E9PGC8 (2)
E9PKG0 (2)
F8VRH0 (2)
G8JLB6 (2)
H0Y3Y3 (2)
H0Y4R1 (2)
H0Y5C6 (2)
H0Y5F3 (2)
H0YAR2 (2)

ENSEMBL ID

ENSG00000170477 (2)

CHEBI ID

CHEBI:24092 (1)
CHEBI:49609 (1)
CHEBI:14282 (1)
CHEBI:5150 (1)
CHEBI:21821 (1)
CHEBI:7373 (1)
CHEBI:58763 (1)
CHEBI:48957 (1)
CHEBI:42126 (1)
CHEBI:20516 (1)
CHEBI:14172 (1)
CHEBI:15890 (1)
CHEBI:4620 (1)
CHEBI:17327 (1)
CHEBI:14836 (1)
CHEBI:8193 (1)
CHEBI:26121 (1)
CHEBI:17090 (1)
CHEBI:58011 (1)
CHEBI:14885 (1)
CHEBI:8400 (1)
CHEBI:26260 (1)
CHEBI:85008 (1)
CHEBI:20349 (1)
CHEBI:11979 (1)
CHEBI:1813 (1)
CHEBI:85531 (1)
CHEBI:13888 (1)
CHEBI:22742 (1)
CHEBI:25399 (1)

Metabolite Name

Adenosine (6)
Adenine (6)
Betaine (4)
Guanine (4)
Creatine (4)
N(omega),N(omega)-dimethyl-L-arginine (3)
S,S-dimethyl-beta-propiothetin (3)
L-leucine (3)
Taurine (3)
Spermidine (3)
L-valine (3)
L-tyrosine (3)
L-phenylalanine (3)
L-proline (3)
Glutathione (3)
Choline (3)
Taurine (3)
L-arginine (3)
Linoleic acid (3)
Guanosine (3)
L-Leucine (3)
Β-alanine betaine (2)
L-proline betaine (2)
O-isovalerylcarnitine (2)
O-propanoyl-L-carnitine (2)
N-Phenyl-2-naphthylamine (2)
Homarine (2)
Sinapoyl malate (2)
Dimethylsulfoniopropionate (2)
L-Arabinitol (2)

First Public Date

2014 (73)
2025 (64)
2024 (57)
2026 (51)
2022 (38)
2017 (33)
2021 (26)
2023 (21)
2016 (21)
2015 (19)
2020 (16)
2019 (16)
2018 (12)
2013 (9)

Modelling Approach

Ordinary differential equation model (1)
Constraint-based model (1)

Study status

Completed (12)
Terminated (6)
Active, not recruiting (4)
Recruiting (4)

Lab affiliation

CSIR-Centre for Cellular and Molecular Biology, Uppal Road, Hyderabad - 500007, India (3)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (2)
Kyungpook national university (2)
Masaryk University, Faculty of Science (2)
School of Medicine, Fu Jen Catholic University, New Taipei, Taiwan (2)
Assistant professor, Biochemistry and Molecular Biology, Johns Hopkin Bloomberg Schools of Public Health, USA. (1)
Beijing Key Laboratory of Cancer Invasion and Metastasis Research, Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Capital Medical University, Beijing 100069, China (1)
Cleveland Clinic (1)
Clinical Proteomics, Mosaiques Diagnostics GmbH (1)
Department of Biochemistry and Molecular Biology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205, USA; Department of Oncology, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA; Department of Biophysics and Biophysical Chemistry, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA. (1)
Department of Life Sciences, University of Mdoena and Reggio Emilia (1)
Department of Oncology, The Johns Hopkins University School of Medicine's Sidney Kimmel Comprehensive Cancer Center, Baltimore, MD, USA (1)
Department of Pathology and Laboratory Medicine, Mount Sinai Hospital, Toronto, Canada (1)
Department of Pathology and Molecular Pathology, University Hospital Zürich and University of Zürich, Zürich, Switzerland (1)
Department of Pathology, University Medical Center Utrecht, Utrecht, The Netherlands (1)
Department of Pathology, University of Texas Southwestern Medical Center, Dallas, TX, USA; Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, Texas, USA (1)
Department of Pharmacology & Neuroscience UNT Health Science Center Fort Worth, TX, USA (1)
Department of Translational Medical Sciences, School of Medicine, Texas A&M University, Houston, TX, USA (1)
Dept. Oncology-Pathology, Scilifelab, Karolinska Institutet, Stockholm, Sweden (1)
Dept. Oncology-Pathology, Scilifelab, Karolinska Institutet, Sweden (1)
Dr Junfang Zheng, Beijing Key Laboratory of Cancer Invasion and Metastasis Research, Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Capital Medical University, Beijing 100069, China (lab head) (1)
Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland (1)
Institution: Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF) Department/Laboratory: Laboratório de Biotecnologia Centro de Biociências e Biotecnologia (1)
Koc University (1)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia Universidade Estadual do Norte Fluminense Darcy Ribeiro Av. Alberto Lamego 2000 Campos dos Goytacazes-RJ, Brazil 28013-602 (1)
Mass Spectrometry Laboratory, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland (1)
Molecular Proteomics Laboratory, Heinrich Heine University Düsseldorf, Düsseldorf, GermanyMolecular Proteomics Laboratory, Heinrich Heine University Düsseldorf, Düsseldorf, Germany (1)
Proteomics, Metabolomics & Mass Spectrometry Laboratory, Institute for the Animal Production System in the Mediterranean Environment (ISPAAM), National Research Council, Piazzale Enrico Fermi 1, 80055 Portici (NA), Italy (1)
Purdue University (1)
Research Center of Basic Medical Sciences, Tianjin Medical University, China (1)

Keyword

RCC (9)
Pembrolizumab (8)
TNBC (5)
CRC (5)
SCCHN (4)
HCC (3)
Paclitaxel (3)
Nivolumab (3)
Spartalizumab (3)
PDR001 (3)
Immunotherapy (3)
Tumor Metabolism (2)
GEJ (2)
NIR178 (2)
A2aR (2)
PD-1 (2)
HNSCC (2)
Endometrial (2)
Kidney Cancer (2)
Gemcitabine (2)
Everolimus (2)
Sorafenib (2)
Ovarian (2)
Advanced (2)
CDX-1140 (1)
GI Cancer (1)
Celldex (1)
CD40 (1)
CD-40 (1)
Flt3l (1)

IsPrivate

False (2)

Submitter Keywords

Immuno-oncology (1)

Study type

Transcription profiling by array (218)
Interventional (24)
Comparative genomic hybridization by array (22)
RNA-seq of coding RNA (21)
Genotyping by array (10)
ChIP-seq (10)
Methylation profiling by array (6)
Other (5)
Unknown experiment type (4)
RNA-seq of non coding RNA (4)
RNA-seq of coding RNA from single cells (3)
Cell line - High-throughput sequencing (2)
Transcription profiling by RT-PCR (2)
Observational (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
Human - High-throughput sequencing (1)
Human - One-color microarray (1)
RNAi profiling by array (1)
MicroRNA profiling by high throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
Genotyping by high throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (444)
2021 (442)
2023 (412)
2025 (366)
2020 (352)
2024 (335)
2019 (246)
2016 (214)
2017 (204)
2018 (191)
2015 (176)
2014 (135)
2013 (124)
2012 (88)
2010 (72)
2011 (60)
2026 (50)
2009 (32)
2008 (30)
2007 (16)
2006 (9)
2005 (5)
2003 (5)
2004 (4)
2001 (4)
2000 (2)
1998 (1)

Location

United States (24)
Spain (10)
United Kingdom (10)
France (8)
Italy (7)
Australia (7)
Germany (6)
Canada (6)
Netherlands (6)
Taiwan (5)
South Korea (5)
Singapore (4)
Asia except Japan (4)
Europe (4)
North America (4)
Belgium (4)
Japan (4)
Chile (3)
Czechia (3)
Argentina (3)
Mexico (2)
Poland (2)
Brazil (2)
Oceania (1)
South Africa (1)
Slovakia (1)
Hong Kong (1)
Norway (1)
New Zealand (1)
Turkey (1)

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lncRNA_mRNA microarray in RCC

Recent large-scale transcriptome analyses have yielded large numbers of transcripts, including long non-coding RNAs (lncRNAs) which were found aberrant in various diseases, especially in cancers. But few lncRNAs that may be involved in renal cell carcinoma (RCC) haven't yet been reported.So we aimed...

ORGANISM(S): Homo sapiens

2014-02-05 | E-MTAB-1830 | biostudies-arrayexpress

Transcriptional profiling of human kidney samples to discover gene signatures of progression and metastasis in renal cell cancer

In order to address the progression, metastasis, and clinical heterogeneity of renal cell cancer (RCC), transcriptional profiling with oligonucleotide microarrays (22,283 genes) was done on 49 RCC tumors, 20 non-RCC renal tumors, and 23 normal kidney samples. Samples were clustered based on gene exp...

ORGANISM(S): Homo sapiens

2009-04-28 | E-GEOD-15641 | biostudies-arrayexpress

Ostreococcus tauri strain:RCC 1116 | isolate:RCC 1116 | cultivar:RCC 1116

Ostreococcus tauri RCC 1116 genome sequencing

PRJNA337285 | ENA

Ostreococcus tauri strain:RCC 1561 | isolate:RCC 1561 | cultivar:RCC 1561

Ostreococcus tauri RCC 1561 genome sequencing

PRJNA337343 | ENA

Ostreococcus tauri strain:RCC 1123 | isolate:RCC 1123 | cultivar:RCC 1123

Ostreococcus tauri RCC 1123 genome sequencing

PRJNA337344 | ENA

Ostreococcus tauri strain:RCC 1110 | isolate:RCC 1110 | cultivar:RCC 1110