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ProteomicsProteogenomic and expression profiling of Marek's disease virus during fully productive replication in the host
Feather follicle epithelium samples were collected from chickens that were infected with Marek's disease virus (MDV). The proteome and phosphoproteome of MDV were then interrogated by high resolution LC-MS.
ORGANISM(S): Gallid Alphaherpesvirus 2 
2023-06-05 | PXD040077 | JPOST Repository
TranscriptomicsSelective Functions of Individual Zinc Fingers Within the DNA-Binding Domain of Ikaros (RNA-seq: Thymocytes)
The C2H2 zinc finger is the most prevalent DNA-binding motif in the mammalian proteome, with DNA-binding domains usually containing more tandem fingers than are needed for stable sequence-specific DNA recognition. To examine the reason for the frequent presence of multiple zinc fingers, we generated...
ORGANISM(S): Mus musculus 
2013-09-08 | E-GEOD-32190 | biostudies-arrayexpress
TranscriptomicsAnalysis of Unannotated Equine Transcripts Identified by mRNA Sequencing
Horse-specific genes are not readily identified from available equine EST/cDNA resources due to relatively limited coverage. In addition, equine gene sets predicted in silico by Ensembl and NCBI will not identify horse specific genes since they rely on homology-based projection of gene structure ann...
ORGANISM(S): Equus caballus 
2013-07-30 | E-GEOD-46858 | biostudies-arrayexpress
GenomicsCONSERTING: integrating copy number analysis with structural variation detection
We developed Copy Number Segmentation by Regression Tree in Next Generation Sequencing (CONSERTING), a novel algorithm for detecting somatic copy number alteration (CNA) using whole-genome sequencing (WGS) data. CONSERTING performs iterative analysis of segmentation by read depth change and localiz...
EGAS00001001202 | EGA
TranscriptomicsSelective Functions of Individual Zinc Fingers Within the DNA-Binding Domain of Ikaros (RNA-seq: sorted DP thymocytes)
The C2H2 zinc finger is the most prevalent DNA-binding motif in the mammalian proteome, with DNA-binding domains usually containing more tandem fingers than are needed for stable sequence-specific DNA recognition. To examine the reason for the frequent presence of multiple zinc fingers, we generated...
ORGANISM(S): Mus musculus 
2013-09-08 | E-GEOD-47496 | biostudies-arrayexpress
TranscriptomicsDUX4-induced gene expression is the major molecular signature in FSHD skeletal muscle
Facioscapulohumeral dystrophy (FSHD) is caused by decreased epigenetic repression of the D4Z4 macrosatellite array and recent studies have shown that this results in the expression of low levels of the DUX4 mRNA in skeletal muscle. Several other mechanisms have been suggested for FSHD pathophysiolog...
ORGANISM(S): Homo sapiens 
2014-07-03 | E-GEOD-56787 | biostudies-arrayexpress
GenomicsPCGP_SJLGG_Array_dataset - samples
SJLGG Case samples using Gene Expression Array
EGAD00010000462 | EGA
GenomicsPCGP LGG - samples
DATA FILES FOR SJLGG
EGAD00001000161 | EGA
GenomicsPCGP LGG WGS 2ndBatch - samples
DATA FILES FOR SJLGG
EGAD00001000695 | EGA
GenomicsPCGP LGG RNASEQ - samples
DATA FILES FOR SJLGG
EGAD00001000353 | EGA
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