Sort   by:  
 Page size 
TranscriptomicsHigh-resolution transcriptome analysis with long-read RNA sequencing
Ongoing improvements to next generation sequencing technologies are leading to longer sequencing read lengths, but a thorough understanding of the impact of longer reads on RNA sequencing analyses is lacking. To address this issue, we generated and compared two RNA sequencing datasets of differing r...
ORGANISM(S): Homo sapiens 
2014-09-25 | E-GEOD-57862 | biostudies-arrayexpress
TranscriptomicsmRNA Sequencing Reveals Altered Synaptic Vesicular Transport in Post-Mortem Cerebellum
Schizophrenia (SCZ) is a common, disabling mental illness with high heritability but complex, poorly understood genetic etiology. As the first phase of a genomic convergence analysis of SCZ, we generated 16.7 billion nucleotides of short read, shotgun sequences of cDNA from post-mortem cerebellar c...
ORGANISM(S): Homo sapiens 
2009-08-29 | E-GEOD-12297 | biostudies-arrayexpress
TranscriptomicsDeterminants of ribosome density in yeast
Here, we use ribosome-footprint profiing and mRNA-seq to determine the average ribosome density on each gene in S. cerevisiae. We then perform quantitative modeling to identify the molecular determinants of ribosome density. Analysis of S. cerevisiae
ORGANISM(S): Saccharomyces cerevisiae 
2013-12-19 | E-GEOD-53313 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of Pseudomonas aeruginosa and Enterococcus faecium coculture grown in open circuit (control) and closed circuit (current collecting) to observe the difference in extracellular electron transfer (EET) mechanisms.
Coculture Pseudomonas aeruginosa and Enterococcus faecium were grown in open circuit (control) and closed circuit (current collecting) to observe the difference in extracellular electron transfer (EET) mechanisms. mRNA was extracted, amplified and used on Combimatrix custom arrays to obtain an expre...
ORGANISM(S): Pseudomonas aeruginosa 
2010-08-13 | E-MTAB-320 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of Clostridium acetobutylicum grown in open circuit (control) and closed circuit (current collecting) to observe the difference in extracellular electron transfer (EET) mechanisms.
Clostridium acetobutylicum was grown in open circuit (control) and closed circuit (current collecting) to observe the difference in extracellular electron transfer (EET) mechanisms. mRNA was extracted, amplified and used on Combimatrix custom arrays to obtain an expression profile. Analysis was perf...
ORGANISM(S): Clostridium acetobutylicum 
2010-07-09 | E-MTAB-267 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of Shewanella oneidensis and Enterococcus faecium coculture grown in open circuit (control) and closed circuit (current collecting) to observe the difference in extracellular electron transfer (EET) mechanisms.
Shewanella oneidensis and Enterococcus faecium were grown in open circuit (control) and closed circuit (current collecting) to observe the difference in extracellular electron transfer (EET) mechanisms. mRNA was extracted, amplified and used on Combimatrix custom arrays to obtain an expression profi...
ORGANISM(S): Enterococcus faecium 
2010-08-30 | E-MTAB-319 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of Geobacter sulfurreducens and Enterococcus faecium coculture grown in open circuit (control) and closed circuit (current collecting) to observe the difference in extracellular electron transfer (EET) mechanisms.
Coculture Geobacter sulfurreducens and Enterococcus faecium were grown in open circuit (control) and closed circuit (current collecting) to observe the difference in extracellular electron transfer (EET) mechanisms. mRNA was extracted, amplified and used on Combimatrix custom arrays to obtain an exp...
ORGANISM(S): Enterococcus faecium 
2010-08-30 | E-MTAB-321 | biostudies-arrayexpress
TranscriptomicsAlternative Isoform Regulation in Human Tissue Transcriptomes
Through alternative processing of pre-mRNAs, individual mammalian genes often produce multiple mRNA and protein isoforms that may have related, distinct or even opposing functions. Here we report an in-depth analysis of 15 diverse human tissue and cell line transcriptomes based on deep sequencing of...
ORGANISM(S): Homo sapiens 
2008-09-30 | E-GEOD-12946 | biostudies-arrayexpress
TranscriptomicsCEU_ARRAY60
Array quantification of 112 HapMap CEU individuals, 60 supporting RNA-seq of the same individuals, 109 supporting HapMap3 analysis
ORGANISM(S): Homo sapiens 
2010-06-01 | E-MTAB-198 | biostudies-arrayexpress
UnknownEVscope: A Comprehensive Bioinformatics Pipeline for Accurate and Robust Analysis of Total RNA Sequencing from Extracellular Vesicles.
Not available
S-EPMC12262516 | biostudies-literature
Sort   by:  
 Page size