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GenomicThe Effect of the Menstrual Cycle on the Normal Human Breast

The Susan G. Komen for the Cure® Tissue Bank at the IU Simon Cancer Center [www.komentissuebank.iu.edu] (KTB) was established expressly for the prospective collection of normal, healthy breast tissue from volunteer donors. Blood is als...

phs000644 | dbGaP
TranscriptomicsExpression profiling of S. pombe acetyltransferase mutants identifies redundant pathways of gene regulation
Analysis of histone acetyl transferases (HATs) from the MYST and GNAT families in S. pombe to identify functional differences or overlap with regard to gene expression. Mutations were made to Elp3 and Gcn5 (GNAT family), and to Mst2 (MYST family). Mutants showed distinct phenotypes which were repres...
ORGANISM(S): Schizosaccharomyces pombe 
2009-09-19 | E-GEOD-17298 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of Pseudomonas aeruginosa and Enterococcus faecium coculture grown in open circuit (control) and closed circuit (current collecting) to observe the difference in extracellular electron transfer (EET) mechanisms.
Coculture Pseudomonas aeruginosa and Enterococcus faecium were grown in open circuit (control) and closed circuit (current collecting) to observe the difference in extracellular electron transfer (EET) mechanisms. mRNA was extracted, amplified and used on Combimatrix custom arrays to obtain an expre...
ORGANISM(S): Pseudomonas aeruginosa 
2010-08-13 | E-MTAB-320 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of Clostridium acetobutylicum grown in open circuit (control) and closed circuit (current collecting) to observe the difference in extracellular electron transfer (EET) mechanisms.
Clostridium acetobutylicum was grown in open circuit (control) and closed circuit (current collecting) to observe the difference in extracellular electron transfer (EET) mechanisms. mRNA was extracted, amplified and used on Combimatrix custom arrays to obtain an expression profile. Analysis was perf...
ORGANISM(S): Clostridium acetobutylicum 
2010-07-09 | E-MTAB-267 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of Shewanella oneidensis and Enterococcus faecium coculture grown in open circuit (control) and closed circuit (current collecting) to observe the difference in extracellular electron transfer (EET) mechanisms.
Shewanella oneidensis and Enterococcus faecium were grown in open circuit (control) and closed circuit (current collecting) to observe the difference in extracellular electron transfer (EET) mechanisms. mRNA was extracted, amplified and used on Combimatrix custom arrays to obtain an expression profi...
ORGANISM(S): Enterococcus faecium 
2010-08-30 | E-MTAB-319 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of Geobacter sulfurreducens and Enterococcus faecium coculture grown in open circuit (control) and closed circuit (current collecting) to observe the difference in extracellular electron transfer (EET) mechanisms.
Coculture Geobacter sulfurreducens and Enterococcus faecium were grown in open circuit (control) and closed circuit (current collecting) to observe the difference in extracellular electron transfer (EET) mechanisms. mRNA was extracted, amplified and used on Combimatrix custom arrays to obtain an exp...
ORGANISM(S): Enterococcus faecium 
2010-08-30 | E-MTAB-321 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of S. pombe acetyltransferase mutants identifies redundant pathways of gene regulation, Affymetrix dataset
Analysis of histone acetyl transferases (HATs) from the MYST and GNAT families in S. pombe to identify functional differences or overlap with regard to gene expression. Mutations were made to Elp3 and Gcn5 (GNAT family), and to Mst2 (MYST family). Mutants showed distinct phenotypes which were repres...
ORGANISM(S): Schizosaccharomyces pombe 
2009-09-25 | E-GEOD-17262 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of E. coli wild type and Fur mutant strains ectopically expressing RyhB to investigate global iron use
RyhB is a non-coding RNA regulated by the Fur repressor. It has previously been shown to cause the rapid degradation of a number of mRNAs that encode proteins that utilize iron. Here we examine the effect of ectopic RyhB production on global gene expression by microarray analysis. Many of the pre...
ORGANISM(S): Escherichia coli 
2007-09-21 | E-GEOD-3105 | biostudies-arrayexpress
TranscriptomicsGenomic comparisons of USA300 Staphylococcus aureus colonizating the nose and rectum of children with skin abscesses
USA300 Staphylococcus aureus is responsible for the current outbreak of skin abscesses in the United States. Unlike other USA types, USA300 colonizes the rectum at rates higher than the nose. The reason for the difference in colonization site preference may be related to specific adherence or attach...
ORGANISM(S): Staphylococcus aureu 
2011-04-15 | E-BUGS-102 | biostudies-arrayexpress
TranscriptomicsLong non-coding RNAs act as novel mediators of Innate Immunity
Recent advances in genome technologies have uncovered thousands of long non-coding RNAs (lncRNAs) whose function in the immune system has been largely unexplored. Members of the Toll-like receptor (TLR) family activate an inducible program of inflammatory genes important in host defenses. Here we p...
ORGANISM(S): Mus musculus 
2013-08-26 | E-GEOD-40978 | biostudies-arrayexpress
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