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TranscriptomicsExpression profiling in N2 (wild-type) early embryo
Determination of gene expression levels in wild-type early embryo. First published in Rechtsteiner et al. 2010 PLoS Genetics. 4 replicates of total RNA from wild-type early embryo
ORGANISM(S): Caenorhabditis elegans 
2014-06-24 | E-GEOD-58759 | biostudies-arrayexpress
TranscriptomicsDRM complex mutant lin-54 vs. H3K36 methyltransferase mutant mes-4 vs. lin-54; mes-4 double mutant vs. wild type C.elegans germline
Here we uncover antagonistic regulation of transcript levels in the germline of Caenorhabditis elegans hermaphrodites. The histone methyltransferase MES-4 marks genes expressed in the germline with methylated Lys36 on histone H3 (H3K36me) and promotes their transcription; MES-4 also represses genes ...
ORGANISM(S): Caenorhabditis elegans 
2013-11-05 | E-GEOD-52064 | biostudies-arrayexpress
TranscriptomicsStrome Pol II, H3K36me3 and CENP-A in met-1 EEMB
ChIP-chip of Pol II, H3K36me3 and CENP-A in met-1 C. elegans early embryo EXPERIMENT TYPE: CHIP-chip. BIOLOGICAL SOURCE: Strain: met-1(n4337); Developmental Stage: Early Embryo; Genotype: met-1(n4337); Sex: population predominantly Hermaphrodites perhaps with some Males; NUMBER OF REPLICATES: 2; EXP...
ORGANISM(S): Caenorhabditis elegans 
2012-01-24 | E-GEOD-35079 | biostudies-arrayexpress
TranscriptomicsTranscript and chromatin analysis in mes-2, mes-4, and mes-2; mes-4 double mutants
This SuperSeries is composed of the following subset Series: GSE38158: mes-2, mes-4 or mes-2; mes-4 mutants vs. wild type GSE38159: Strome MES-4, H3K36me3 and H3K27me3 in mes-4 RNAi EEMB GSE38180: Strome Mes-4, H3K36me3 and H3K27me3 in N2 EEMB Refer to individual Series
ORGANISM(S): Caenorhabditis elegans 
2012-05-29 | E-GEOD-38160 | biostudies-arrayexpress
TranscriptomicsHTS comparison of sig-7 (RNAi) vs WT C. elegans early stage embryos
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Caenorhabditis elegans 
2016-08-10 | E-GEOD-85445 | biostudies-arrayexpress
TranscriptomicsRoles of relSpn in Stringent Response, Global Regulation, and Virulence of Serotype 2 Streptococcus pneumoniae D39
Transcriptome analysis of D39 rel+Spn and delta-relSpn strains treated with mupirocin revealed relSpn-independent (translation stress), relSpn-dependent (stringent response), and delta-relSpn-dependent changes suggesting that relSpn and (p)ppGpp amount play wide-ranging homeostatic roles in pneumoco...
ORGANISM(S): Streptococcus pneumoniae 
2010-05-15 | E-GEOD-14750 | biostudies-arrayexpress
Transcriptomicsmes-2, mes-4 or mes-2; mes-4 mutants vs. wild type
Trascriptional profiling of C. elegans adult germ lines comparing mes-2(bn11)unc-4(e120) mutants and unc-4(e120) (wild type), mes-4(bn85) mutants and N2 (wild type), mes-2(bn11)unc-4(e120); mes-4(bn85) and unc-4(e120) (wild type) at 20 degrees. One-condition experiment, mutant vs. WT. Biological re...
ORGANISM(S): Caenorhabditis elegans 
2012-05-29 | E-GEOD-38158 | biostudies-arrayexpress
TranscriptomicsStrome MES-4, H3K36me3 and H3K27me3 in mes-4 RNAi EEMB
ChIP-chip of MES-4, H3K36me3 and H3K27me3 in mes-4 RNAi C. elegans early embryo EXPERIMENT TYPE: CHIP-chip. BIOLOGICAL SOURCE: Strain: mes-4 RNAi; Developmental Stage: Early Embryo; Genotype: N2; Sex: population predominantly Hermaphrodites perhaps with some Males; NUMBER OF REPLICATES: 2; EXPERIMEN...
ORGANISM(S): Caenorhabditis elegans 
2012-05-29 | E-GEOD-38159 | biostudies-arrayexpress
TranscriptomicsStrome Mes-4, H3K36me3 and H3K27me3 in N2 EEMB
ChIP-chip of Mes-4, H3K36me3 and H3K27me3 in N2 C. elegans early embryo EXPERIMENT TYPE: CHIP-chip. BIOLOGICAL SOURCE: Strain: N2; Developmental Stage: Early Embryo; Genotype: N2; Sex: population predominantly Hermaphrodites perhaps with some Males; NUMBER OF REPLICATES: 2 or 3; EXPERIMENTAL FACTORS...
ORGANISM(S): Caenorhabditis elegans 
2012-05-29 | E-GEOD-38180 | biostudies-arrayexpress
Genomicsseq-UP07329_H4K16ac:DAM1687546_N2_Eemb
This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of t...
ORGANISM(S): Caenorhabditis elegans 
2014-04-10 | E-GEOD-56661 | biostudies-arrayexpress
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