Reconstitution - OmicsDI

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Mus musculus (291)
Homo sapiens (267)
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mouse gut metagenome (2)
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unidentified (2)
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Tissue

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Cell type cancer (1)
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Technology Type

Mass Spectrometry (382)
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Bottom-up proteomics (100)
Mass spectrometry assay (57)
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Affinity purification coupled with mass spectrometry proteomics (41)
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SWATH MS (25)
Chemical cross-linking coupled with mass spectrometry proteomics (18)
Gel-based experiment (15)
SRM/MRM (9)
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HDMSE (7)
MSE (6)
All-ion fragmentation (5)
Illumina HiSeq 2000 (3)
NMR spectroscopy (2)
NextSeq 500 (ILLUMINA), Illumina HiSeq 2500 (ILLUMINA) (1)
Genotype (1)
Illumina humanomniexpress-24-v1-1, humanomniexpress-24-v1-1, Illumina HumanOmniExpress-12-v1-0, Illumina HumanOmni1-Quad_v1-0, HumanOmni25-8v1-2_A1, HumanOmniExpress-12-v1-0 (1)
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Illumina (1)
Illumina HiSeq 2000, Illumina HumanOmni2-5_8v1_A (1)
ESI (1)

Instrument Platform

Q Exactive (71)
Liquid Chromatography MS - positive - reverse phase (36)
Liquid Chromatography MS - negative - reverse phase (34)
Liquid Chromatography MS - positive - reverse-phase (32)
Liquid Chromatography MS - negative - reverse-phase (29)
Illumina NovaSeq 6000 (9)
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NextSeq 500 (3)
BAS-5000 [FUJIFILM] (2)
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MicrOTOF-Q II (2)
Agilent 6530 QTOF (2)
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6530A Q-TOF LC/MS (1)
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2013 (55)
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2006 (2)
2005 (1)

UNIPROT ID/AC

P34057 (1)
O54828 (1)
Q9WVL4 (1)
P15409 (1)
O35599 (1)
Q8CFY0 (1)
P09174 (1)
Q3U6B2 (1)
P20443 (1)
P27600 (1)

CHEBI ID

CHEBI:17596 (76)
CHEBI:16708 (74)
CHEBI:16704 (74)
CHEBI:17562 (73)
CHEBI:15891 (73)
CHEBI:17368 (73)
CHEBI:15428 (72)
CHEBI:17750 (72)
CHEBI:15676 (71)
CHEBI:16610 (71)
CHEBI:28044 (71)
CHEBI:30769 (71)
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CHEBI:29016 (70)
CHEBI:15354 (70)
CHEBI:32816 (69)
CHEBI:27897 (69)
CHEBI:17154 (68)
CHEBI:17568 (68)
CHEBI:17768 (67)
CHEBI:26271 (67)
CHEBI:25094 (67)
CHEBI:18186 (67)
CHEBI:28300 (67)
CHEBI:144829 (1)
CHEBI:16356 (1)
CHEBI:29108 (1)
CHEBI:15996 (1)
CHEBI:17552 (1)

Metabolite Name

Arginine (70)
Tyrosine (70)
Alanine (70)
Glycine (70)
Serine (69)
Proline (69)
Lysine (69)
Asparagine (69)
Phenylalanine (69)
Threonine (69)
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Leucine (68)
Uridine (67)
Taurine (67)
Inosine (67)
Glutamate (67)
Citrulline (67)
Methionine (67)
Choline (67)
Spermidine (67)
5-oxoproline (66)
Glycerophosphoethanolamine (66)
Aspartate (66)
Glucose (66)
Deoxycarnitine (65)

First Public Date

2026 (114)
2025 (100)
2024 (97)
2023 (88)
2014 (73)
2021 (68)
2020 (50)
2022 (47)
2019 (34)
2018 (32)
2016 (27)
2017 (22)
2015 (20)
2013 (16)
2012 (1)

Modelling Approach

Ordinary differential equation model (3)

Study status

Withdrawn (1)
Recruiting (1)
Completed (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (10)
Professor (5)
Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Monash Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia (4)
Protein Biogenesis Laboratory, Francis Crick Institute, London, UK (4)
Department of Cell Biology, Harvard Medical School (3)
Head of the Curie Institute Mass Spectrometry Platform (3)
School of Life Sciences, The Chinese University of Hong Kong (3)
USDA ARS; Boyce Thompson Institute; Cornell University (3)
Yale University Department of Chemistry (3)
1. Barts Cancer Institute Queen Mary, University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ 2. Instituto de Parasitología y Biomedicina López-Neyra, Consejo Superior de Investigaciones Científicas (CSIC), Granada, 18016, Spain (2)
Biochemistry and molecular biology, Duong lab, University of British Columbia (2)
Blizard Institute, Centre for Genomics and Child Health, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, London, E1 2AT, UK (2)
Center for Functional Protein Assemblies (CPA), Department of Bioscience, TUM School of Natural Sciences, Technical University of Munich (TUM), Ernst-Otto-Fischer-Stra?e 8, 85748 Garching, Germany (2)
Centre for Genomics and Computational Biology, Barts Cancer Institute, Queen Mary University of London (2)
Department of Biochemistry and Molecular Biology, Faculty of Medicine, University of British Columbia (2)
Department of Cell Biology, Harvard Medical School, 240 Longwood Ave., Boston, MA 02115 (2)
Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, United States (2)
Department of Obsetrics and Gynecology, The University of Melbourne (2)
Functional Proteomics, ICR (2)
Gene Center Munich and Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor-Lynen-Str. 25, 81377 Munich, Germany (2)
Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, United States (2)
Institute of Biochemistry, University of Kiel (2)
Institute of Functional Epigenetics, Helmholtz Zentrum München, 85764 Neuherberg, Germany. (2)
Max Perutz Labs, Vienna BioCenter, University of Vienna Dr. Bohr-Gasse 9/5, 1030 Vienna, Austria (2)
Professor Emeritus Department of Chemistry The University of Texas at San Antonio Effective July 1, 2026: Johnson Foundation Professor of Chemical Enzymology Department of Biochemistry and Biophysics, Perelman School of Medicine Department of Chemistry, School of Arts and Sciences University of Pennsylvania, Philadelphia, PA 19104 (2)
Proteomics Lab, 304, BSBE Department, Indian Institute Technology Bombay, Powai, Mumbai, India-400076 (2)
Proteomics Unit Navarrabiomed, Pamplona, Spain (2)
Structural Biology Group, European Synchrotron Radiation Facility (ESRF), Grenoble, France (2)
Technical University in Munich (2)
The Francis Crick Institute (2)

Keyword

Severe Combined Immune Deficiency (SCID) with NK cell activity (1)
Omenn Syndrome (1)
Bare Lymphocyte Syndrome (BLS) (1)
Combined Immune Deficiency (CID) syndromes (1)
Wiskott-Aldrich Syndrome (1)
Leukocyte adhesion deficiency (1)
Chronic granulomatous disease (CGD) (1)
Hyper IgM (XHIM) syndrome (1)
IPEX syndrome (1)
Chediak-Higashi Syndrome (1)
Autoimmune Lymphoproliferative Syndrome (ALPS) (1)
Hemophagocytic Lymphohistiocytosis (HLH) syndromes (1)
Lymphocyte Signaling defects (1)
Congenital Amegakaryocytic Thrombocytopenia (CAMT) (1)
Osteopetrosis (1)
Hurler syndrome (MPS I) (1)
Hurler syndrome (MPS II) (1)
Krabbe Disease, also known as Globoid Cell Leukodystrophy (1)
Metachromatic leukodystrophy (MLD) (1)
X-linked adrenoleukodystrophy (ALD) (1)
Alpha Mannosidosis (1)
Gaucher Disease (1)
Thalassemia major (1)
Sickle cell disease (SCD) (1)
Diamond Blackfan Anemia (DBA) (1)
Inflammatory Bowel Disease (1)
IPEX or IPEX-like Syndromes (1)
Heptavalent Pneumococcal Conjugate Vaccine (1)
Adult nasal type extranodal NK/T-cell lymphoma (1)
Small intestine lymphoma (1)

IsPrivate

False (3)

Submitter Keywords

Immuno-oncology (1)

Classification

bacteria (5)
viruses (2)

Modification

4x(15)N labeled L-arginine (3)
2x(15)N labeled L-lysine (2)
1x(15)N labeled L-leucine (1)
3x(2)H labeled N6-acetyl-L-lysine (1)

Study type

Transcription profiling by array (118)
RNA-seq of coding RNA (22)
ChIP-seq (10)
RNA-seq of coding RNA from single cells (8)
Other (6)
Unknown experiment type (3)
Comparative genomic hybridization by array (3)
Interventional (2)
Baseline (1)
MNase-seq (1)
ChIP-chip by tiling array (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
Genotyping by array (1)
Exome sequencing (1)
MicroRNA profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)
Observational (1)

Release Date

2021 (483)
2022 (481)
2023 (446)
2025 (406)
2020 (395)
2024 (361)
2019 (359)
2018 (328)
2017 (318)
2016 (305)
2015 (273)
2014 (245)
2013 (220)
2011 (185)
2012 (161)
2009 (144)
2010 (133)
2008 (96)
2006 (65)
2007 (63)
2026 (50)
2005 (49)
2004 (20)
2003 (19)
2001 (19)
2000 (19)
2002 (11)
1999 (10)
1998 (8)
1997 (8)

Location

United States (3)

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Impact of the used solvent on the reconstitution efficiency of evaporated biosamples for untargeted metabolomics studies

Introduction

Untargeted metabolomics intends to objectively analyze a wide variety of compounds. Their diverse physicochemical properties make it difficult to choose an appropriate reconstitution solvent after sample evaporation without influencing the chromatography or hamper column sorbent...

2021-10-27 | MTBLS1219 | MetaboLights

Complete pathway elucidation and heterologous reconstitution of Rhodiola salidroside biosynthesis

Salidroside is a bioactive tyrosine-derived phenolic natural product found in medicinal plants under the Rhodiola genus. In addition to their roles in traditional medicine as anti-fatigue and anti-anoxia adaptogens, Rhodiola total extract and salidroside have also displayed medicinal properties as a...

2018-01-25 | MTBLS566 | MetaboLights

Effect of ATG7 reconstitution in AGY571 cells

Not available

ORGANISM(S): Mus musculus

ST000460 | MetabolomicsWorkbench

Monocyte involvement in HIV-Tuberculosis-associated Immune Reconstitution Inflammatory Syndrome at initiation of antiretroviral therapy

Tuberculosis-associated Immune Reconstitution Inflammatory Syndrome (TB-IRIS) is a common complication in HIV-TB co-infected patients receiving combined antiretroviral therapy (cART). While monocytes/macrophages play major roles in both HIV- and TB-infection individually, a putative contribution of ...

ORGANISM(S): Homo sapiens

2013-04-01 | E-MEXP-3618 | biostudies-arrayexpress

Monocyte involvement in HIV-Tuberculosis associated Immune Reconstitution Inflammatory Syndrome at week 2 of ART

Tuberculosis-associated Immune Reconstitution Inflammatory Syndrome (TB-IRIS) is a common complication in HIV-TB coinfected patients receiving combined antiretroviral therapy (cART). While monocytes/macrophages play major roles in both HIV- and TB-infection individually, a putative contribution of m...

ORGANISM(S): Homo sapiens

2013-07-08 | E-MEXP-3591 | biostudies-arrayexpress

miRNA expression, mRNA expression upon miRNA reconstitution, and direct mRNA target identification in prostate cancer cell lines

This SuperSeries is composed of the following subset Series: GSE17315: mRNA expression upon reconstitution of miR-130a, miR-203 and miR-205 in prostate cancer cell line LNCaP GSE17317: miRNA expression in LNCaP, PC3, Du-145 and RWPE-1 cell lines GSE22979: Profiling of direct mRNA targets of miR-130a...

ORGANISM(S): Homo sapiens

2012-03-07 | E-GEOD-17362 | biostudies-arrayexpress

Innate and antigen-specific cytotoxic cells and Paradoxical HIV-associated Tuberculosis Immune reconstitution inflammatory syndrome (TB-IRIS)

Tuberculosis Immune Reconstitution Inflammatory Syndrome (TB-IRIS) frequently complicates combined anti-retroviral therapy (ART) and anti-tubercular therapy in HIV-1 co-infected tuberculosis (TB) patients. The immunopathological mechanism underlying TB-IRIS is incompletely defined. Differential tran...

ORGANISM(S): Homo sapiens

2013-06-24 | E-GEOD-48237 | biostudies-arrayexpress

Transcriptomic Predictors of Paradoxical Cryptococcosis-Associated Immune Reconstitution Inflammatory Syndrome

PRJNA428168 | ENA

Ancestral population reconstitution

Ancestral population reconstitution from isofemale lines as a tool for experimental evolution

PRJEB15225 | ENA

Hairy Cell Leukemia Cell Line JOK1 +/- RhoH Reconstitution

PRJNA658103 | ENA