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TranscriptomicsRNA-Seq and BS-Seq of Sorghum bicolor tissues
This study utilized next generation sequencing technology (RNA-Seq and BS-Seq) to examine the transcriptome and methylome of various tissues within sorghum plants with the ultimate goal of improving the Sorghum bicolor annotation We examined the mRNA of various Sorghum bicolor (BTx623) tissues (flow...
ORGANISM(S): Sorghum bicolor 
2014-08-29 | E-GEOD-50464 | biostudies-arrayexpress
GenomicsThe maize methylome modulates mRNA splicing and reveals widespread paramutation guided by small RNA.
Methylation of chromosomal DNA in animals and plants is a fundamental mechanism of epigenetic regulation, and the maize genome, with its diverse complement of transposons and repeats, is a paradigm for transgenerational mechanisms such as paramutation and imprinting. We have determined the genome-wi...
ORGANISM(S): Zea mays 
2013-06-03 | E-GEOD-39232 | biostudies-arrayexpress
TranscriptomicsRNA-Seq and BS-Seq of Sorghum bicolor tissues
This experiment contains the subset of data corresponding to sorghum RNA-Seq data from experiment E-GEOD-50464 (http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50464/), which goal is to examine the transcriptome of various Sorghum bicolor (BTx623) tissues: flowers, vegetative and floral meriste...
ORGANISM(S): Sorghum bicolor 
2014-08-29 | E-MTAB-3839 | biostudies-arrayexpress
TranscriptomicsRNA-seq data for a comparative transcriptome study of Sorghum bicolor BTX623
We selected 11 tissues from sorghum reference genome line BTX623 for comparative study between Maize and sorghum. These 11 tissues were selected at different development stages at Cold Spring Harbor Laboratory upland farm, RNA were extracted, library was made and sequenced on HiSeq2500 PE125 platfo...
ORGANISM(S): Sorghum bicolor 
2018-07-31 | E-MTAB-5956 | biostudies-arrayexpress
TranscriptomicsRNA-seq of coding RNA from two inbred strains of maize, B73 and Mo17
This is a total RNA-seq data set of two inbred lines of maize, B73 and Mo17, extracted from experiment E-GEOD-39232 (https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-39232/). E-GEOD-39232 is a larger study which also studied the expression of small RNAs and genome-wide cytosine methylation patt...
ORGANISM(S): Zea mays 
2014-10-20 | E-MTAB-3028 | biostudies-arrayexpress
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