Ren Yang Y - OmicsDI

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Unknown (4554)
Proteomics (114)
Transcriptomics (31)
Metabolomics (18)
Multiomics (6)
Genomics (4)

Organisms

Homo sapiens (77)
Mus musculus (24)
Arabidopsis thaliana (6)
Zea mays (3)
Triticum aestivum (3)
Hordeum vulgare (3)
Saccharomyces cerevisiae (2)
Babesia microti (2)
Rattus norvegicus (2)
Yersinia pestis CO92 (2)
Staphylococcus aureus (2)
Clostridium acetobutylicum (1)
Actinoplanes sp. SE50/110 (1)
Drosophila melanogaster (1)
Aeromonas hydrophila HS01 (1)
Bubalus bubalis (1)
Caenorhabditis elegans (1)
Escherichia coli (1)
Human alphaherpesvirus 1 (1)
Mus (1)
Riemerella anatipestifer RA-YM (1)
Sorghum bicolor (1)
synthetic construct (code 6) (1)
Ailuropoda melanoleuca (1)
Cucumis sativus (1)
Gallus gallus (1)
Oryza sativa (1)
Sulfurospirillum halorespirans DSM 13726 (1)

Organisms

Saccharomyces cerevisiae (1)

Repository

pride (61)
iProX (42)
biostudies-arrayexpress (32)
MetaboLights (18)
MassIVE (8)
PeptideAtlas (3)
EGA (2)
ENA (1)

Tissue

Cell culture (15)
Liver (10)
Epithelial cell (4)
Hepatocyte (4)
Root (4)
Testis (4)
Others (3)
Blood plasma (3)
Brain (3)
Permanent cell line cell (3)
Cell suspension culture (2)
Embryo (2)
HeLa cell (2)
Placenta (2)
Plant cell (2)
Spleen (2)
B cell (1)
Blood cell (1)
Epididymal white adipose tissue (1)
Flower (1)
Leaf (1)
Male germ cell (1)
Ovary epithelium cell line (1)
Prostate gland (1)
Skin (1)
Small intestine (1)
Whole body (1)

Disease

Hepatocellular carcinoma (2)
Liver cancer (2)
Adult hepatocellular carcinoma (1)
Alzheimer's disease 18 (1)
Burkitt lymphoma (1)
Cervix carcinoma (1)
Colon cancer (1)
Male infertility (1)
Ovarian cancer (1)
Prostate adenocarcinoma (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (61)
Shotgun proteomics (29)
Mass spectrometry (17)
Bottom-up proteomics (14)
Gel-based experiment (5)
Data-dependent acquisition (4)
Top-down proteomics (4)
Proteogenomics (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Mass spectrometry assay (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (6)
Liquid Chromatography MS - positive - reverse phase (6)
MS:1000031 (3)
Orbitrap Fusion Lumos (3)
Liquid Chromatography MS - (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
LTQ Orbitrap Elite (2)
Illumina MiSeq (1)
Q Exactive (1)
Q Exactive HF (1)
Agilent 7890A+LECO Chroma TOF PEGASUS HT (1)
Flame ionisation detector MS - (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Xevo G2 QTOF (Waters) (1)
QExactive (1)

Publication Date

2021 (23)
2025 (21)
2024 (20)
2022 (15)
2023 (13)
2020 (9)
2013 (8)
2010 (8)
2026 (8)
2014 (7)
2019 (7)
2017 (4)
2018 (4)
2011 (3)
2009 (3)
2007 (3)
2016 (3)
2008 (2)
2015 (1)
2012 (1)
2006 (1)

UNIPROT ID/AC

A0A024R563 (3)
A0A024R8H9 (3)
A0A024RAN2 (3)
A0A024RC46 (3)
A0A087WUD1 (3)
A0A087WVZ5 (3)
A0A087WWK8 (3)
A0A087WXI0 (3)
A0A087WZE9 (3)
A0A087X1S3 (3)
A0A0A0MR66 (3)
A0A0A0MS51 (3)
A0A0A0MSA7 (3)
A0A0B4J220 (3)
A0A0C4DG89 (3)
A0A0C4DGT3 (3)
A0AV96 (3)
A0AVT1 (3)
A0FGR8 (3)
A0FGR8-2 (3)
A0FGR8-6 (3)
A0JLT2 (3)
A0JNW5 (3)
A0MZ66 (3)
A0PJW6 (3)
A0PK00 (3)
A1A4S6 (3)
A1L0T0 (3)
A1L170 (3)
A1L390 (3)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:15354 (10)
CHEBI:17351 (9)
CHEBI:16335 (8)
CHEBI:16708 (8)
CHEBI:16737 (8)
CHEBI:17368 (8)
CHEBI:17405 (8)
CHEBI:17562 (8)
CHEBI:17750 (8)
CHEBI:30769 (8)
CHEBI:15428 (7)
CHEBI:15603 (7)
CHEBI:15756 (7)
CHEBI:15891 (7)
CHEBI:16196 (7)
CHEBI:16359 (7)
CHEBI:16467 (7)
CHEBI:16704 (7)
CHEBI:16750 (7)
CHEBI:16919 (7)
CHEBI:17203 (7)
CHEBI:17596 (7)
CHEBI:17895 (7)
CHEBI:18183 (7)
CHEBI:18257 (7)
CHEBI:7916 (7)
CHEBI:16040 (6)
CHEBI:16347 (6)
CHEBI:16450 (6)
CHEBI:16543 (6)

Metabolite Name

Creatinine (5)
Cytidine (5)
Linoleic acid (5)
4-Pyridoxic acid (4)
Adenine (4)
Adenosine (4)
Betaine (4)
Cholic acid (4)
Citric acid (4)
Creatine (4)
Kynurenic acid (4)
L-Arginine (4)
Leucine (4)
Methionine sulfoxide (4)
N6-Acetyl-L-lysine (4)
Nicotinamide (4)
Ornithine (4)
Phosphorylcholine (4)
Taurodeoxycholic acid (4)
Urea (4)
Uric acid (4)
Xanthurenic acid (4)
1-methylnicotinamide (3)
7-methylguanosine (3)
Bilirubin (3)
Choline (3)
Cytosine (3)
Fumaric acid (3)
Glycerophosphocholine (3)
Glycine (3)

First Public Date

2014 (1)

Study type

Transcription profiling by array (10)
ChIP-chip by tiling array (9)
RNA-seq of coding RNA (8)
Other (3)
Comparative genomic hybridization by array (1)
ChIP-seq (1)

Release Date

2025 (827)
2023 (644)
2022 (639)
2024 (560)
2021 (479)
2020 (337)
2019 (203)
2018 (167)
2017 (148)
2026 (142)
2016 (125)
2015 (96)
2014 (71)
2013 (41)
2012 (34)
2011 (24)
2010 (20)
2009 (9)
2008 (6)
2007 (4)
2006 (4)
2005 (3)
2004 (1)
2002 (1)
2001 (1)

Lab affiliation

Professor and Director Center of Proteomic Analysis BGI-Shenzhen (6)
Beijing proteome research center (3)
Gansu Provincial Key Lab of Aridland Crop Science/ Gansu Agricultural University, Lanzhou, China (3)
Department of Clinical Laboratory, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China. The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (2)
Department of Laboratory Medicine, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China. (2)
Hubei University of Medicine, Taihe Hospital (2)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
State Key Laboratory for Innovation and Transformation of Luobing Theory; Key Laboratory of Cardiovascular Remodeling and Function Research, Chinese Ministry of Education, Chinese National Health Commission and Chinese Academy of Medical Sciences; Department of Cardiology, Qilu Hospital of Shandong University, Jinan, China (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China. (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
The Second Affiliated Hospital Zhejiang University School of Medicine (2)
Cancer Institute, Fudan University Shanghai Cancer Center (1)
China Agricultural University (1)
China National GenBank,BGI-Shenzhen,Shenzhen 518120,China (1)
College of Agriculture, Guizhou University, Guiyang, Guizhou, China (1)
College of Agronomy, Gansu AgriculturalUniversity, Lanzhou 730070, China (1)
College of Life Science, Northeast Foresty University, China (1)
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China (1)
Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, China (1)
Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA 92697, USA (1)
Department of Medicine & Pharmacy Research Center, Binzhou Medical University, Yantai, Shandong, P. R. China, 264003 (1)
Department of Urology, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA (1)
Division of Plastic and Reconstructive Surgery, The First Affiliated Hospital of Sun Yat-sen University (1)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
Hangzhou Institute for Advanced Study，UCAS (1)
HeBeiMedical Unviersity (1)
Helmholtz Centre for Environmental Research – UFZ Department of Molecular Systems Biology Permoserstr. 15 04318 Leipzig, Germany (1)
Moffitt Cancer Center Tampa, FL, USA (1)
Nanjing Medical University (1)

Tags

xref:PubMed:17679090 (1)

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Differentially expressed proteins between WT Y. pestis and ΔhmwC

ORGANISM(S): Yersinia Pestis Co92

2023-06-12 | PXD042928 |

CcpA, a Pleiotropic Key Regulator in Butanol-producing Clostridium acetobutylicum ATCC 824

Clostridium acetobutylicum is a typical bacterium of major importance to industrial butanol production. In order to dissect the regulatory network pertaining to the industrial application of this bacterium, catabolite control protein A (CcpA) was investigated for its global function by DNA microarra...

ORGANISM(S): Clostridium acetobutylicum

2012-08-30 | E-GEOD-33364 | biostudies-arrayexpress

Plasma metabolome alteration in dairy cows with left displaced abomasum before and after surgical correction

Left displaced abomasum (LDA) leads to substantial changes in the metabolism of dairy cows. Surgical correction of LDA can rapidly improve the health of cows; however, changes in metabolism following surgery are rarely described. To investigate the changes of plasma metabolome in cows with LDA befor...

2022-08-17 | MTBLS4126 | MetaboLights

Myeloid PFKFB3-mediated glycolysis promotes kidney fibrosis

Excessive renal fibrosis is a common pathology in progressive chronic kidney diseases. Inflammatory injury and aberrant repair processes contribute to the development of kidney fibrosis. Myeloid cells, particularly monocytes/macrophages, play a crucial role in kidney fibrosis by releasing their proi...

2024-03-12 | MTBLS8278 | MetaboLights

Qian Yang Yu Yin Granule Improves Renal Injury of Hypertension by Regulating Metabolic Reprogramming Mediated by HIF-1α/PKM2 Positive Feedback Loop.

Not available

S-EPMC8218631 | biostudies-literature

Developmental Validation of a Rapidly Mutating Y-STR Panel Labeled by Six Fluoresceins for Forensic Research.

Not available

S-EPMC8927084 | biostudies-literature

Exploring synergistic effects of Achyranthes bidentata Blume and Paeonia lactiflora Pall. on hypertension with liver yang hyperactivity using the multidisciplinary integrative strategy.

Not available

S-EPMC11550124 | biostudies-literature

Analysis of Function Role and Long Noncoding RNA Expression in Chronic Heart Failure Rats Treated with Hui Yang Jiu Ji Decoction.

Not available